Wall clock time and date at job start Wed Apr 1 2020 02:15:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.46253 * 126.95751 * 2 1 4 4 C 1.39698 * 134.19134 * 359.97438 * 3 2 1 5 5 C 1.36621 * 119.71159 * 180.32422 * 4 3 2 6 6 C 1.38843 * 120.44290 * 359.97438 * 5 4 3 7 7 C 1.37792 * 120.74151 * 0.02562 * 6 5 4 8 8 C 1.39033 * 119.85814 * 359.97438 * 7 6 5 9 9 O 1.34713 * 133.24284 * 180.02562 * 8 7 6 10 10 C 1.34949 * 110.86267 * 179.97438 * 9 8 7 11 11 C 1.46970 * 125.13134 * 180.02562 * 10 9 8 12 12 O 1.21655 * 119.99897 * 180.02562 * 11 10 9 13 13 N 1.34773 * 120.00174 * 359.75608 * 11 10 9 14 14 C 1.46505 * 120.00102 * 179.97438 * 13 11 10 15 15 C 1.53004 * 109.47029 * 179.97438 * 14 13 11 16 16 H 1.08997 * 109.51353 * 305.00370 * 15 14 13 17 17 C 1.53294 * 109.51322 * 184.90141 * 15 14 13 18 18 N 1.47149 * 108.38447 * 187.77582 * 17 15 14 19 19 C 1.36944 * 120.98108 * 230.55309 * 18 17 15 20 20 H 1.08004 * 119.99350 * 26.24235 * 19 18 17 21 21 C 1.38806 * 120.00193 * 206.24393 * 19 18 17 22 22 N 1.31624 * 119.99987 * 16.90116 * 21 19 18 23 23 Si 1.86799 * 120.00085 * 196.90923 * 21 19 18 24 24 H 1.48496 * 109.47268 * 59.99731 * 23 21 19 25 25 H 1.48501 * 109.47116 * 179.97438 * 23 21 19 26 26 H 1.48503 * 109.46894 * 299.99504 * 23 21 19 27 27 C 1.47155 * 118.03589 * 50.53574 * 18 17 15 28 28 C 1.53296 * 108.38323 * 309.46026 * 27 18 17 29 29 O 1.42958 * 109.26304 * 52.28072 * 28 27 18 30 30 H 1.09001 * 109.47301 * 270.16705 * 1 2 3 31 31 H 1.09001 * 109.47288 * 30.17371 * 1 2 3 32 32 H 1.08998 * 109.46736 * 150.17006 * 1 2 3 33 33 H 1.08001 * 120.14641 * 0.34270 * 4 3 2 34 34 H 1.08001 * 119.77774 * 180.02562 * 5 4 3 35 35 H 1.08003 * 119.62603 * 180.02562 * 6 5 4 36 36 H 1.07998 * 120.07006 * 179.97438 * 7 6 5 37 37 H 0.97007 * 120.00047 * 359.97438 * 13 11 10 38 38 H 1.08998 * 109.47245 * 300.00072 * 14 13 11 39 39 H 1.09004 * 109.46972 * 60.00613 * 14 13 11 40 40 H 1.09005 * 109.68132 * 307.49994 * 17 15 14 41 41 H 1.09002 * 109.68156 * 68.00902 * 17 15 14 42 42 H 0.96993 * 119.99885 * 180.02562 * 22 21 19 43 43 H 1.08996 * 109.68180 * 69.19011 * 27 18 17 44 44 H 1.09004 * 109.67776 * 189.70263 * 27 18 17 45 45 H 1.09002 * 109.51066 * 172.22501 * 28 27 18 46 46 H 1.09000 * 109.51413 * 292.38305 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3863 1.1687 0.0000 4 6 2.1714 2.5490 -0.0004 5 6 3.2396 3.4007 -0.0070 6 6 4.5359 2.9032 -0.0127 7 6 4.7692 1.5452 -0.0124 8 6 3.6980 0.6589 -0.0057 9 8 3.6125 -0.6855 -0.0033 10 6 2.3236 -1.0852 0.0042 11 6 1.8717 -2.4837 0.0093 12 8 0.6822 -2.7385 0.0155 13 7 2.7751 -3.4838 0.0014 14 6 2.3247 -4.8779 0.0070 15 6 3.5404 -5.8067 -0.0046 16 1 4.1790 -5.5600 -0.8527 17 6 3.0722 -7.2616 -0.1222 18 7 4.2387 -8.1405 0.0570 19 6 4.5151 -9.1370 -0.8407 20 1 4.1817 -9.0493 -1.8643 21 6 5.2237 -10.2596 -0.4353 22 7 5.3427 -10.5354 0.8462 23 14 6.0086 -11.3788 -1.7083 24 1 6.9904 -10.6049 -2.5097 25 1 6.7027 -12.4982 -1.0225 26 1 4.9570 -11.9228 -2.6047 27 6 5.0996 -7.9168 1.2293 28 6 5.4691 -6.4300 1.2811 29 8 4.2766 -5.6448 1.2102 30 1 -0.3634 0.0030 1.0277 31 1 -0.3634 0.8884 -0.5165 32 1 -0.3633 -0.8915 -0.5112 33 1 1.1651 2.9413 0.0047 34 1 3.0747 4.4680 -0.0069 35 1 5.3707 3.5885 -0.0174 36 1 5.7819 1.1701 -0.0172 37 1 3.7236 -3.2806 -0.0079 38 1 1.7326 -5.0648 0.9029 39 1 1.7155 -5.0664 -0.8771 40 1 2.3316 -7.4725 0.6493 41 1 2.6343 -7.4279 -1.1064 42 1 5.8382 -11.3196 1.1295 43 1 4.5632 -8.1937 2.1369 44 1 6.0046 -8.5177 1.1401 45 1 5.9905 -6.2167 2.2142 46 1 6.1154 -6.1859 0.4380 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035602787.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:15:32 Heat of formation + Delta-G solvation = -27.088889 kcal Electronic energy + Delta-G solvation = -29271.887423 eV Core-core repulsion = 25128.770275 eV Total energy + Delta-G solvation = -4143.117147 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.79740 -39.71179 -38.49685 -38.12503 -35.19227 -34.40544 -34.00625 -31.70464 -30.97649 -30.79795 -30.12114 -28.15206 -27.33351 -25.70162 -24.01134 -23.19568 -23.01074 -21.88701 -21.02108 -20.36842 -19.71811 -18.40496 -17.36078 -16.98874 -16.73127 -16.54180 -16.04091 -15.87822 -15.28062 -14.94458 -14.75667 -14.46988 -14.37946 -14.15130 -13.85882 -13.74997 -13.37019 -13.24953 -13.10874 -12.96357 -12.78601 -12.64819 -12.57076 -12.38099 -12.11448 -11.60605 -11.30478 -11.14908 -10.87256 -10.76970 -10.45298 -10.32504 -10.27601 -10.19561 -10.00418 -9.70076 -9.19856 -9.10584 -8.99618 -8.57115 -8.45703 -6.79230 -5.87321 -3.31242 0.27338 0.98122 1.55253 2.22376 2.99590 3.03952 3.32467 3.33306 3.39233 3.40054 4.11045 4.20513 4.23096 4.40312 4.50275 4.61993 4.74869 4.87947 5.01669 5.06345 5.11876 5.29827 5.31065 5.42715 5.46789 5.48355 5.64474 5.68723 5.74533 5.76794 5.82871 5.93734 5.97549 6.04402 6.09700 6.12934 6.19784 6.23466 6.33465 6.38976 6.44953 6.70847 6.72436 7.06738 7.38508 7.48580 7.67307 7.81517 7.96539 8.30124 9.08008 9.70680 10.27332 11.20816 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.021591 B = 0.002059 C = 0.001963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.530386 B =13592.609929 C =14257.208202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.083 4.083 3 C -0.141 4.141 4 C -0.059 4.059 5 C -0.141 4.141 6 C -0.085 4.085 7 C -0.111 4.111 8 C 0.072 3.928 9 O -0.182 6.182 10 C -0.030 4.030 11 C 0.597 3.403 12 O -0.517 6.517 13 N -0.705 5.705 14 C 0.129 3.871 15 C 0.064 3.936 16 H 0.060 0.940 17 C 0.122 3.878 18 N -0.594 5.594 19 C -0.257 4.257 20 H 0.069 0.931 21 C 0.002 3.998 22 N -0.903 5.903 23 Si 0.907 3.093 24 H -0.283 1.283 25 H -0.290 1.290 26 H -0.281 1.281 27 C 0.139 3.861 28 C 0.040 3.960 29 O -0.390 6.390 30 H 0.077 0.923 31 H 0.067 0.933 32 H 0.092 0.908 33 H 0.129 0.871 34 H 0.131 0.869 35 H 0.137 0.863 36 H 0.136 0.864 37 H 0.409 0.591 38 H 0.081 0.919 39 H 0.086 0.914 40 H 0.031 0.969 41 H 0.065 0.935 42 H 0.256 0.744 43 H 0.029 0.971 44 H 0.095 0.905 45 H 0.082 0.918 46 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.452 27.100 -1.228 27.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.087 4.087 3 C -0.142 4.142 4 C -0.077 4.077 5 C -0.159 4.159 6 C -0.103 4.103 7 C -0.129 4.129 8 C 0.024 3.976 9 O -0.084 6.084 10 C -0.079 4.079 11 C 0.382 3.618 12 O -0.396 6.396 13 N -0.355 5.355 14 C 0.006 3.994 15 C 0.004 3.996 16 H 0.078 0.922 17 C -0.005 4.005 18 N -0.317 5.317 19 C -0.386 4.386 20 H 0.086 0.914 21 C -0.196 4.196 22 N -0.547 5.547 23 Si 0.736 3.264 24 H -0.210 1.210 25 H -0.215 1.215 26 H -0.208 1.208 27 C 0.013 3.987 28 C -0.038 4.038 29 O -0.309 6.309 30 H 0.096 0.904 31 H 0.086 0.914 32 H 0.111 0.889 33 H 0.147 0.853 34 H 0.149 0.851 35 H 0.154 0.846 36 H 0.154 0.846 37 H 0.245 0.755 38 H 0.099 0.901 39 H 0.104 0.896 40 H 0.049 0.951 41 H 0.083 0.917 42 H 0.066 0.934 43 H 0.047 0.953 44 H 0.113 0.887 45 H 0.100 0.900 46 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -4.042 26.610 -1.004 26.934 hybrid contribution 1.115 -0.695 -0.700 1.489 sum -2.927 25.915 -1.704 26.136 Atomic orbital electron populations 1.20444 0.87388 1.03887 1.03177 1.21397 0.97056 0.89443 1.00759 1.19827 0.92386 0.94348 1.07673 1.20352 0.99815 0.90231 0.97324 1.20799 0.92245 1.00065 1.02805 1.21013 0.97545 0.93731 0.97999 1.20033 0.96906 0.91180 1.04777 1.19741 0.95553 0.81129 1.01201 1.84039 1.27097 1.20884 1.76333 1.21825 0.81037 0.94879 1.10194 1.16610 0.85907 0.81653 0.77642 1.90847 1.15252 1.82407 1.51057 1.45899 1.10264 1.06319 1.72970 1.21551 0.96468 0.78016 1.03395 1.22818 0.92187 0.96645 0.87963 0.92228 1.21434 0.90905 0.88147 1.00019 1.44059 1.24939 1.35345 1.27393 1.19153 1.33203 0.96067 0.90177 0.91354 1.25056 1.02014 0.96600 0.95975 1.70023 1.43617 1.27545 1.13470 0.86308 0.79446 0.79946 0.80703 1.20975 1.21541 1.20762 1.21454 0.97047 0.90723 0.89433 1.23333 0.85729 0.94476 1.00261 1.87792 1.38263 1.66697 1.38161 0.90430 0.91386 0.88888 0.85276 0.85132 0.84551 0.84629 0.75533 0.90099 0.89580 0.95135 0.91682 0.93408 0.95317 0.88725 0.89993 0.94074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.93 9.81 36.01 0.35 -0.57 16 2 C -0.08 -1.00 6.39 -102.27 -0.65 -1.66 16 3 C -0.14 -1.56 6.37 -105.19 -0.67 -2.23 16 4 C -0.06 -0.49 10.06 -39.62 -0.40 -0.89 16 5 C -0.14 -0.95 9.98 -39.94 -0.40 -1.34 16 6 C -0.08 -0.57 10.01 -39.52 -0.40 -0.97 16 7 C -0.11 -0.96 10.07 -39.45 -0.40 -1.36 16 8 C 0.07 0.83 7.41 -38.35 -0.28 0.55 16 9 O -0.18 -2.35 10.28 2.77 0.03 -2.32 16 10 C -0.03 -0.40 7.07 -36.92 -0.26 -0.66 16 11 C 0.60 8.62 7.79 -12.72 -0.10 8.52 16 12 O -0.52 -8.38 14.62 5.23 0.08 -8.30 16 13 N -0.70 -9.78 5.50 -61.52 -0.34 -10.12 16 14 C 0.13 1.91 5.34 -4.04 -0.02 1.89 16 15 C 0.06 1.10 2.81 -26.58 -0.07 1.03 16 16 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 17 C 0.12 2.50 6.02 -3.54 -0.02 2.48 16 18 N -0.59 -14.69 3.05 -171.82 -0.52 -15.21 16 19 C -0.26 -6.91 9.65 -15.06 -0.15 -7.06 16 20 H 0.07 1.79 7.88 -52.48 -0.41 1.37 16 21 C 0.00 0.07 4.95 -17.43 -0.09 -0.02 16 22 N -0.90 -25.78 11.14 55.49 0.62 -25.16 16 23 Si 0.91 21.29 29.59 -169.99 -5.03 16.26 16 24 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 25 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 26 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 27 C 0.14 3.28 5.45 -3.53 -0.02 3.26 16 28 C 0.04 0.76 6.98 37.31 0.26 1.02 16 29 O -0.39 -7.29 10.33 -35.23 -0.36 -7.65 16 30 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.09 1.06 6.38 -51.93 -0.33 0.73 16 33 H 0.13 0.79 8.06 -52.49 -0.42 0.36 16 34 H 0.13 0.53 8.06 -52.49 -0.42 0.10 16 35 H 0.14 0.53 8.06 -52.48 -0.42 0.10 16 36 H 0.14 0.94 8.06 -52.49 -0.42 0.51 16 37 H 0.41 5.34 8.19 -40.82 -0.33 5.00 16 38 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 39 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 40 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 41 H 0.06 1.26 7.96 -51.93 -0.41 0.84 16 42 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 43 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 44 H 0.09 2.45 6.14 -51.93 -0.32 2.13 16 45 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 46 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 382.36 15.07 5.76 5.76 Total: -1.00 -31.66 382.36 -9.53 -41.19 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: -6.44 Total: 3.56 kcal Atomic # 6 Polarization: 5.31 SS G_CDS: -3.31 Total: 2.00 kcal Atomic # 7 Polarization: -50.25 SS G_CDS: -0.24 Total: -50.50 kcal Atomic # 8 Polarization: -18.01 SS G_CDS: -0.26 Total: -18.27 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.03 Total: 16.26 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -31.66 -9.53 -41.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035602787.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.097 kcal (2) G-P(sol) polarization free energy of solvation -31.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds