Wall clock time and date at job start Wed Apr 1 2020 02:15:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.46244 * 126.96532 * 2 1 4 4 C 1.39698 * 134.18686 * 359.96249 * 3 2 1 5 5 C 1.36626 * 119.71021 * 180.02562 * 4 3 2 6 6 C 1.38832 * 120.44406 * 359.97382 * 5 4 3 7 7 C 1.37794 * 120.74174 * 0.04668 * 6 5 4 8 8 C 1.39030 * 119.85812 * 0.22833 * 7 6 5 9 9 O 1.34717 * 133.24240 * 180.43940 * 8 7 6 10 10 C 1.34947 * 110.86512 * 179.54079 * 9 8 7 11 11 C 1.46973 * 125.13606 * 179.76544 * 10 9 8 12 12 O 1.21650 * 120.00044 * 179.97438 * 11 10 9 13 13 N 1.34773 * 119.99478 * 359.97352 * 11 10 9 14 14 C 1.46502 * 119.99926 * 180.02562 * 13 11 10 15 15 C 1.52999 * 109.47381 * 179.97438 * 14 13 11 16 16 H 1.08994 * 109.51184 * 60.00039 * 15 14 13 17 17 C 1.53297 * 109.51016 * 180.09820 * 15 14 13 18 18 N 1.47151 * 108.38242 * 172.22455 * 17 15 14 19 19 C 1.36947 * 120.98292 * 129.48619 * 18 17 15 20 20 H 1.08001 * 119.99586 * 333.61184 * 19 18 17 21 21 C 1.38811 * 119.99900 * 153.61111 * 19 18 17 22 22 N 1.31621 * 120.00035 * 343.16876 * 21 19 18 23 23 Si 1.86802 * 119.99840 * 163.16695 * 21 19 18 24 24 H 1.48503 * 109.46735 * 94.42795 * 23 21 19 25 25 H 1.48497 * 109.47453 * 214.42834 * 23 21 19 26 26 H 1.48495 * 109.47026 * 334.43075 * 23 21 19 27 27 C 1.47149 * 118.03652 * 309.46324 * 18 17 15 28 28 C 1.53299 * 108.38430 * 50.54101 * 27 18 17 29 29 O 1.42960 * 109.25931 * 307.71615 * 28 27 18 30 30 H 1.09006 * 109.47221 * 89.99837 * 1 2 3 31 31 H 1.08995 * 109.47819 * 210.00475 * 1 2 3 32 32 H 1.09004 * 109.47026 * 330.00261 * 1 2 3 33 33 H 1.07999 * 120.14794 * 0.02562 * 4 3 2 34 34 H 1.08000 * 119.77665 * 179.97438 * 5 4 3 35 35 H 1.08000 * 119.62919 * 180.02562 * 6 5 4 36 36 H 1.08007 * 120.07327 * 179.97438 * 7 6 5 37 37 H 0.96995 * 120.00697 * 359.97438 * 13 11 10 38 38 H 1.09002 * 109.46898 * 299.99864 * 14 13 11 39 39 H 1.09002 * 109.47629 * 59.99347 * 14 13 11 40 40 H 1.09001 * 109.68141 * 291.94556 * 17 15 14 41 41 H 1.08999 * 109.68637 * 52.50031 * 17 15 14 42 42 H 0.96998 * 119.99461 * 180.02562 * 22 21 19 43 43 H 1.09004 * 109.68155 * 170.25235 * 27 18 17 44 44 H 1.09000 * 109.68447 * 290.77310 * 27 18 17 45 45 H 1.08992 * 109.51610 * 67.61555 * 28 27 18 46 46 H 1.08998 * 109.51483 * 187.72392 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3864 1.1685 0.0000 4 6 2.1715 2.5488 -0.0007 5 6 3.2399 3.4004 -0.0010 6 6 4.5360 2.9030 -0.0001 7 6 4.7692 1.5449 0.0002 8 6 3.6980 0.6586 -0.0053 9 8 3.6124 -0.6858 0.0010 10 6 2.3235 -1.0853 0.0010 11 6 1.8714 -2.4838 0.0021 12 8 0.6819 -2.7386 0.0025 13 7 2.7748 -3.4839 0.0027 14 6 2.3243 -4.8780 0.0032 15 6 3.5401 -5.8069 0.0032 16 1 4.1414 -5.6195 0.8927 17 6 3.0696 -7.2659 0.0012 18 7 4.2441 -8.1319 -0.1877 19 6 4.4833 -9.1882 0.6505 20 1 4.1081 -9.1697 1.6631 21 6 5.2080 -10.2825 0.1986 22 7 5.3808 -10.4697 -1.0927 23 14 5.9380 -11.4895 1.4233 24 1 5.0001 -12.6241 1.6191 25 1 7.2317 -12.0007 0.9034 26 1 6.1625 -10.8032 2.7209 27 6 5.1538 -7.8299 -1.3042 28 6 5.5228 -6.3434 -1.2386 29 8 4.3269 -5.5635 -1.1654 30 1 -0.3634 0.0000 -1.0277 31 1 -0.3634 -0.8899 0.5139 32 1 -0.3633 0.8900 0.5138 33 1 1.1653 2.9412 -0.0009 34 1 3.0750 4.4678 -0.0019 35 1 5.3709 3.5881 0.0001 36 1 5.7820 1.1697 0.0004 37 1 3.7233 -3.2809 0.0020 38 1 1.7235 -5.0653 0.8932 39 1 1.7237 -5.0661 -0.8867 40 1 2.5911 -7.4986 0.9526 41 1 2.3629 -7.4227 -0.8137 42 1 5.8868 -11.2346 -1.4084 43 1 6.0556 -8.4360 -1.2173 44 1 4.6573 -8.0441 -2.2506 45 1 6.1321 -6.1582 -0.3541 46 1 6.0838 -6.0678 -2.1315 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035602789.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:15:36 Heat of formation + Delta-G solvation = -27.098763 kcal Electronic energy + Delta-G solvation = -29287.662480 eV Core-core repulsion = 25144.544904 eV Total energy + Delta-G solvation = -4143.117576 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.79244 -39.70909 -38.49800 -38.12152 -35.18635 -34.40247 -33.99954 -31.70875 -30.97452 -30.79537 -30.11799 -28.14919 -27.33890 -25.69994 -24.01143 -23.19697 -23.00577 -21.88345 -21.00175 -20.36170 -19.72389 -18.40597 -17.35676 -16.98890 -16.72631 -16.54387 -16.05763 -15.84728 -15.28404 -14.94363 -14.75597 -14.46857 -14.37716 -14.14740 -13.85936 -13.74782 -13.37350 -13.25112 -13.11402 -12.96486 -12.77992 -12.64614 -12.56752 -12.37589 -12.11166 -11.60376 -11.30134 -11.15606 -10.88796 -10.74682 -10.44809 -10.32735 -10.27333 -10.18986 -10.00906 -9.69768 -9.19232 -9.10513 -8.99166 -8.57641 -8.45165 -6.79064 -5.87722 -3.31459 0.27728 0.98497 1.55675 2.22872 2.99751 3.04865 3.31921 3.32823 3.39316 3.41380 4.10510 4.20863 4.23922 4.40128 4.50686 4.62449 4.75467 4.88378 5.02120 5.06740 5.12173 5.29784 5.31355 5.41667 5.46892 5.48629 5.64794 5.69099 5.74678 5.77140 5.83199 5.94157 5.97937 6.04728 6.09901 6.13011 6.20234 6.23784 6.33356 6.38963 6.44875 6.70874 6.72809 7.06542 7.39787 7.48398 7.67556 7.80861 7.97517 8.29894 9.07829 9.70545 10.27207 11.20493 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.022141 B = 0.002061 C = 0.001959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.347126 B =13585.236522 C =14291.946124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.084 4.084 3 C -0.141 4.141 4 C -0.059 4.059 5 C -0.141 4.141 6 C -0.085 4.085 7 C -0.111 4.111 8 C 0.072 3.928 9 O -0.182 6.182 10 C -0.029 4.029 11 C 0.596 3.404 12 O -0.518 6.518 13 N -0.704 5.704 14 C 0.129 3.871 15 C 0.064 3.936 16 H 0.060 0.940 17 C 0.122 3.878 18 N -0.594 5.594 19 C -0.256 4.256 20 H 0.069 0.931 21 C 0.002 3.998 22 N -0.902 5.902 23 Si 0.905 3.095 24 H -0.286 1.286 25 H -0.289 1.289 26 H -0.278 1.278 27 C 0.139 3.861 28 C 0.040 3.960 29 O -0.390 6.390 30 H 0.077 0.923 31 H 0.093 0.907 32 H 0.067 0.933 33 H 0.129 0.871 34 H 0.131 0.869 35 H 0.137 0.863 36 H 0.136 0.864 37 H 0.410 0.590 38 H 0.086 0.914 39 H 0.080 0.920 40 H 0.065 0.935 41 H 0.031 0.969 42 H 0.255 0.745 43 H 0.094 0.906 44 H 0.029 0.971 45 H 0.041 0.959 46 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.480 27.023 1.910 27.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.087 4.087 3 C -0.142 4.142 4 C -0.077 4.077 5 C -0.159 4.159 6 C -0.103 4.103 7 C -0.129 4.129 8 C 0.024 3.976 9 O -0.083 6.083 10 C -0.079 4.079 11 C 0.382 3.618 12 O -0.396 6.396 13 N -0.353 5.353 14 C 0.006 3.994 15 C 0.004 3.996 16 H 0.078 0.922 17 C -0.005 4.005 18 N -0.317 5.317 19 C -0.385 4.385 20 H 0.087 0.913 21 C -0.197 4.197 22 N -0.546 5.546 23 Si 0.735 3.265 24 H -0.213 1.213 25 H -0.215 1.215 26 H -0.204 1.204 27 C 0.014 3.986 28 C -0.038 4.038 29 O -0.309 6.309 30 H 0.096 0.904 31 H 0.111 0.889 32 H 0.086 0.914 33 H 0.147 0.853 34 H 0.149 0.851 35 H 0.154 0.846 36 H 0.154 0.846 37 H 0.246 0.754 38 H 0.104 0.896 39 H 0.098 0.902 40 H 0.083 0.917 41 H 0.049 0.951 42 H 0.065 0.935 43 H 0.112 0.888 44 H 0.047 0.953 45 H 0.059 0.941 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -4.054 26.558 1.698 26.919 hybrid contribution 1.076 -0.764 0.636 1.465 sum -2.978 25.794 2.334 26.070 Atomic orbital electron populations 1.20444 0.87395 1.03885 1.03182 1.21395 0.97053 0.89444 1.00790 1.19825 0.92391 0.94347 1.07668 1.20352 0.99811 0.90234 0.97334 1.20796 0.92246 1.00063 1.02811 1.21010 0.97545 0.93732 0.98010 1.20035 0.96909 0.91180 1.04768 1.19742 0.95550 0.81133 1.01200 1.84041 1.27092 1.20879 1.76320 1.21829 0.81036 0.94883 1.10166 1.16612 0.85905 0.81660 0.77655 1.90844 1.15255 1.82407 1.51106 1.45865 1.10314 1.06268 1.72903 1.21559 0.96440 0.78088 1.03331 1.22822 0.91555 0.96370 0.88876 0.92217 1.21439 0.90830 0.88248 1.00007 1.44067 1.22654 1.31333 1.33695 1.19191 1.32443 0.94559 0.92313 0.91328 1.25059 1.02045 0.96848 0.95719 1.70035 1.43095 1.29682 1.11829 0.86238 0.78665 0.81026 0.80600 1.21328 1.21467 1.20375 1.21447 0.96408 0.90497 0.90284 1.23330 0.85634 0.94590 1.00231 1.87782 1.36239 1.64225 1.42674 0.90435 0.88875 0.91394 0.85281 0.85136 0.84554 0.84626 0.75450 0.89629 0.90166 0.91677 0.95141 0.93480 0.88761 0.95312 0.94065 0.89990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.93 9.81 36.00 0.35 -0.58 16 2 C -0.08 -1.01 6.39 -102.28 -0.65 -1.66 16 3 C -0.14 -1.56 6.37 -105.20 -0.67 -2.23 16 4 C -0.06 -0.49 10.06 -39.62 -0.40 -0.89 16 5 C -0.14 -0.95 9.98 -39.94 -0.40 -1.35 16 6 C -0.08 -0.57 10.01 -39.52 -0.40 -0.97 16 7 C -0.11 -0.97 10.07 -39.45 -0.40 -1.36 16 8 C 0.07 0.83 7.41 -38.35 -0.28 0.55 16 9 O -0.18 -2.35 10.28 2.77 0.03 -2.33 16 10 C -0.03 -0.39 7.07 -36.91 -0.26 -0.66 16 11 C 0.60 8.64 7.79 -12.72 -0.10 8.54 16 12 O -0.52 -8.40 14.61 5.23 0.08 -8.32 16 13 N -0.70 -9.81 5.45 -61.53 -0.34 -10.15 16 14 C 0.13 1.91 5.37 -4.04 -0.02 1.89 16 15 C 0.06 1.10 2.86 -26.58 -0.08 1.02 16 16 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 17 C 0.12 2.50 6.02 -3.53 -0.02 2.48 16 18 N -0.59 -14.68 3.05 -171.82 -0.52 -15.21 16 19 C -0.26 -6.88 9.65 -15.06 -0.15 -7.03 16 20 H 0.07 1.80 7.88 -52.49 -0.41 1.38 16 21 C 0.00 0.06 4.95 -17.43 -0.09 -0.03 16 22 N -0.90 -25.78 11.15 55.49 0.62 -25.16 16 23 Si 0.91 21.27 29.59 -169.99 -5.03 16.24 16 24 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 25 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 26 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 27 C 0.14 3.28 5.44 -3.53 -0.02 3.26 16 28 C 0.04 0.76 6.98 37.31 0.26 1.02 16 29 O -0.39 -7.25 10.14 -35.23 -0.36 -7.61 16 30 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.09 1.06 6.37 -51.93 -0.33 0.73 16 32 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 34 H 0.13 0.53 8.06 -52.49 -0.42 0.11 16 35 H 0.14 0.53 8.06 -52.49 -0.42 0.11 16 36 H 0.14 0.94 8.06 -52.48 -0.42 0.52 16 37 H 0.41 5.41 8.07 -40.82 -0.33 5.08 16 38 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 39 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 40 H 0.06 1.26 7.96 -51.93 -0.41 0.84 16 41 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 43 H 0.09 2.43 6.15 -51.93 -0.32 2.12 16 44 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 46 H 0.08 1.38 8.14 -51.93 -0.42 0.95 16 LS Contribution 382.06 15.07 5.76 5.76 Total: -1.00 -31.66 382.06 -9.52 -41.18 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: -6.44 Total: 3.58 kcal Atomic # 6 Polarization: 5.32 SS G_CDS: -3.31 Total: 2.01 kcal Atomic # 7 Polarization: -50.27 SS G_CDS: -0.24 Total: -50.51 kcal Atomic # 8 Polarization: -18.00 SS G_CDS: -0.25 Total: -18.25 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.03 Total: 16.24 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -31.66 -9.52 -41.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035602789.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.080 kcal (2) G-P(sol) polarization free energy of solvation -31.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds