Wall clock time and date at job start Wed Apr 1 2020 02:25:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38838 * 119.77616 * 2 1 4 4 C 1.37792 * 120.74256 * 180.02562 * 3 2 1 5 5 C 1.39028 * 119.85725 * 0.02562 * 4 3 2 6 6 O 1.34711 * 133.24050 * 180.35401 * 5 4 3 7 7 C 1.34950 * 110.85992 * 180.09890 * 6 5 4 8 8 C 1.46979 * 125.12722 * 179.81152 * 7 6 5 9 9 O 1.21656 * 119.99610 * 179.69466 * 8 7 6 10 10 N 1.34771 * 120.00461 * 359.69305 * 8 7 6 11 11 C 1.46503 * 120.00194 * 179.97438 * 10 8 7 12 12 C 1.53003 * 109.46847 * 180.02562 * 11 10 8 13 13 H 1.08998 * 109.50946 * 60.10345 * 12 11 10 14 14 C 1.53717 * 109.48148 * 180.36236 * 12 11 10 15 15 N 1.47154 * 108.16009 * 172.39943 * 14 12 11 16 16 C 1.36931 * 120.97887 * 129.43492 * 15 14 12 17 17 H 1.08005 * 120.00440 * 333.49504 * 16 15 14 18 18 C 1.38812 * 119.99878 * 153.49544 * 16 15 14 19 19 N 1.31622 * 120.00058 * 343.08256 * 18 16 15 20 20 Si 1.86803 * 119.99905 * 162.80886 * 18 16 15 21 21 H 1.48497 * 109.46927 * 90.00263 * 20 18 16 22 22 H 1.48506 * 109.46836 * 209.99902 * 20 18 16 23 23 H 1.48490 * 109.47352 * 329.99799 * 20 18 16 24 24 C 1.47149 * 118.03579 * 309.15864 * 15 14 12 25 25 C 1.53296 * 108.38694 * 50.78628 * 24 15 14 26 26 O 1.42963 * 109.22250 * 307.69880 * 25 24 15 27 27 C 1.35805 * 109.73862 * 359.54500 * 7 6 5 28 28 C 1.40727 * 119.15850 * 359.97423 * 5 4 3 29 29 C 1.36624 * 119.77922 * 179.97438 * 2 1 3 30 30 H 1.08995 * 109.47390 * 270.01943 * 1 2 3 31 31 H 1.09005 * 109.47447 * 30.02574 * 1 2 3 32 32 H 1.09006 * 109.47018 * 150.02023 * 1 2 3 33 33 H 1.08001 * 119.62855 * 359.97398 * 3 2 1 34 34 H 1.08002 * 120.07255 * 179.97438 * 4 3 2 35 35 H 0.97001 * 119.99690 * 0.02562 * 10 8 7 36 36 H 1.08999 * 109.46958 * 60.00489 * 11 10 8 37 37 H 1.08997 * 109.46760 * 300.00352 * 11 10 8 38 38 H 1.08999 * 109.83737 * 52.72102 * 14 12 11 39 39 H 1.09001 * 109.74797 * 292.02541 * 14 12 11 40 40 H 0.96999 * 120.00005 * 180.02562 * 19 18 16 41 41 H 1.08993 * 109.68413 * 170.50997 * 24 15 14 42 42 H 1.08997 * 109.68203 * 291.02940 * 24 15 14 43 43 H 1.09004 * 109.50741 * 67.61742 * 25 24 15 44 44 H 1.08993 * 109.51437 * 187.72356 * 25 24 15 45 45 H 1.07997 * 126.96214 * 180.24723 * 27 7 6 46 46 H 1.08000 * 120.14134 * 0.02562 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1964 1.2051 0.0000 4 6 3.5742 1.2283 -0.0005 5 6 4.2865 0.0344 -0.0016 6 8 5.6021 -0.2553 0.0037 7 6 5.8003 -1.5901 -0.0026 8 6 7.1136 -2.2502 -0.0032 9 8 7.1838 -3.4647 -0.0036 10 7 8.2398 -1.5100 -0.0035 11 6 9.5488 -2.1679 -0.0036 12 6 10.6523 -1.1081 -0.0032 13 1 10.5600 -0.4868 0.8876 14 6 12.0258 -1.7981 -0.0125 15 7 13.0570 -0.7646 -0.1969 16 6 14.1385 -0.6909 0.6398 17 1 14.0657 -1.0637 1.6508 18 6 15.3286 -0.1369 0.1885 19 7 15.5382 0.0103 -1.1026 20 14 16.6296 0.4069 1.4138 21 1 17.5505 -0.7242 1.6925 22 1 17.3990 1.5436 0.8470 23 1 15.9735 0.8335 2.6757 24 6 12.8948 0.1833 -1.3106 25 6 11.4817 0.7735 -1.2414 26 8 10.5301 -0.2910 -1.1700 27 6 4.6032 -2.2315 -0.0023 28 6 3.5825 -1.1841 -0.0016 29 6 2.1855 -1.1858 0.0005 30 1 -0.3634 0.0003 1.0276 31 1 -0.3634 0.8898 -0.5142 32 1 -0.3633 -0.8902 -0.5135 33 1 1.6467 2.1347 -0.0004 34 1 4.0995 2.1719 -0.0009 35 1 8.1837 -0.5416 -0.0028 36 1 9.6426 -2.7902 -0.8935 37 1 9.6427 -2.7901 0.8864 38 1 12.0741 -2.5151 -0.8320 39 1 12.1863 -2.3118 0.9354 40 1 16.3699 0.3971 -1.4180 41 1 13.6310 0.9823 -1.2228 42 1 13.0297 -0.3375 -2.2585 43 1 11.3926 1.4015 -0.3550 44 1 11.2931 1.3722 -2.1324 45 1 4.4384 -3.2988 -0.0028 46 1 1.6442 -2.1204 0.0005 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035608910.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:25:01 Heat of formation + Delta-G solvation = -28.306143 kcal Electronic energy + Delta-G solvation = -28862.297720 eV Core-core repulsion = 24719.127789 eV Total energy + Delta-G solvation = -4143.169932 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.77878 -39.73214 -38.62629 -38.37342 -35.09018 -34.34929 -33.13510 -32.60983 -31.64187 -30.82990 -29.89795 -27.78023 -27.18771 -25.79060 -24.01556 -23.17992 -22.22613 -21.94408 -21.61381 -20.74294 -19.74587 -18.37669 -17.77012 -16.95333 -16.68465 -16.23613 -15.93625 -15.65473 -15.41390 -14.98758 -14.79413 -14.47918 -14.39527 -14.27811 -14.03526 -13.82404 -13.54823 -13.37864 -13.20114 -13.11178 -12.77088 -12.61208 -12.46342 -12.21153 -12.03724 -11.61121 -11.32490 -11.15711 -10.88695 -10.76204 -10.53759 -10.49401 -10.42586 -10.31477 -10.01156 -9.70335 -9.20723 -9.10580 -8.81629 -8.57412 -8.56906 -6.79102 -5.87788 -3.31483 0.26671 0.94587 1.56560 2.19402 2.98249 3.02285 3.27862 3.32055 3.39235 3.41230 4.07621 4.20584 4.28568 4.40159 4.40226 4.64438 4.74480 4.84353 4.98224 5.05508 5.08279 5.18345 5.25829 5.29789 5.41286 5.46220 5.48185 5.52474 5.72290 5.75101 5.78276 5.80990 5.96639 5.98713 6.10578 6.12391 6.17400 6.23287 6.33220 6.36601 6.44847 6.70155 6.71166 7.06432 7.36712 7.48388 7.67425 7.80560 7.94149 8.29808 9.07765 9.70488 10.27231 11.20331 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.025335 B = 0.001875 C = 0.001809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.942111 B =14926.862108 C =15471.461282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.107 4.107 3 C -0.084 4.084 4 C -0.105 4.105 5 C 0.065 3.935 6 O -0.182 6.182 7 C -0.017 4.017 8 C 0.595 3.405 9 O -0.519 6.519 10 N -0.703 5.703 11 C 0.128 3.872 12 C 0.064 3.936 13 H 0.061 0.939 14 C 0.122 3.878 15 N -0.593 5.593 16 C -0.257 4.257 17 H 0.069 0.931 18 C 0.003 3.997 19 N -0.902 5.902 20 Si 0.905 3.095 21 H -0.286 1.286 22 H -0.289 1.289 23 H -0.279 1.279 24 C 0.139 3.861 25 C 0.040 3.960 26 O -0.390 6.390 27 C -0.119 4.119 28 C -0.139 4.139 29 C -0.063 4.063 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.137 0.863 34 H 0.137 0.863 35 H 0.411 0.589 36 H 0.081 0.919 37 H 0.086 0.914 38 H 0.031 0.969 39 H 0.065 0.935 40 H 0.255 0.745 41 H 0.094 0.906 42 H 0.029 0.971 43 H 0.041 0.959 44 H 0.082 0.918 45 H 0.171 0.829 46 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.350 2.049 1.930 28.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.107 4.107 3 C -0.103 4.103 4 C -0.123 4.123 5 C 0.017 3.983 6 O -0.084 6.084 7 C -0.067 4.067 8 C 0.380 3.620 9 O -0.397 6.397 10 N -0.352 5.352 11 C 0.005 3.995 12 C 0.003 3.997 13 H 0.078 0.922 14 C -0.005 4.005 15 N -0.317 5.317 16 C -0.386 4.386 17 H 0.087 0.913 18 C -0.196 4.196 19 N -0.546 5.546 20 Si 0.735 3.265 21 H -0.213 1.213 22 H -0.215 1.215 23 H -0.204 1.204 24 C 0.013 3.987 25 C -0.038 4.038 26 O -0.309 6.309 27 C -0.139 4.139 28 C -0.140 4.140 29 C -0.081 4.081 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.154 0.846 34 H 0.154 0.846 35 H 0.246 0.754 36 H 0.099 0.901 37 H 0.104 0.896 38 H 0.049 0.951 39 H 0.083 0.917 40 H 0.065 0.935 41 H 0.113 0.887 42 H 0.047 0.953 43 H 0.059 0.941 44 H 0.100 0.900 45 H 0.188 0.812 46 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -27.985 1.424 1.714 28.073 hybrid contribution 0.997 0.772 0.659 1.423 sum -26.987 2.196 2.373 27.180 Atomic orbital electron populations 1.20762 0.90472 1.03015 1.02508 1.19542 0.96552 0.92636 1.01994 1.20892 0.92430 0.98144 0.98788 1.20004 0.93104 0.94867 1.04370 1.19750 0.80926 0.95739 1.01907 1.84043 1.24595 1.23669 1.76075 1.22079 0.96002 0.80441 1.08171 1.16658 0.81431 0.86228 0.77717 1.90890 1.85800 1.12069 1.50989 1.45875 1.05561 1.11090 1.72698 1.21579 0.79467 0.95071 1.03383 1.22913 0.95568 0.92257 0.88914 0.92154 1.21525 0.87390 0.91600 1.00008 1.44075 1.22947 1.30735 1.33951 1.19184 0.88860 1.38082 0.92462 0.91328 1.25056 0.96864 1.01994 0.95695 1.70032 1.25277 1.47483 1.11854 0.86258 0.81440 0.78259 0.80588 1.21260 1.21464 1.20440 1.21447 0.92417 0.94479 0.90310 1.23330 0.91669 0.88544 1.00231 1.87780 1.56178 1.44169 1.42801 1.22716 0.89161 1.00134 1.01919 1.19906 0.94575 0.92456 1.07056 1.20212 0.91014 0.98386 0.98455 0.91065 0.91334 0.91401 0.84565 0.84561 0.75380 0.90119 0.89591 0.95096 0.91665 0.93462 0.88745 0.95326 0.94052 0.89990 0.81203 0.85201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.49 9.99 36.00 0.36 -0.13 16 2 C -0.11 -0.76 5.85 -104.99 -0.61 -1.38 16 3 C -0.08 -0.59 9.66 -39.52 -0.38 -0.97 16 4 C -0.11 -0.91 10.07 -39.45 -0.40 -1.31 16 5 C 0.07 0.74 7.41 -38.35 -0.28 0.45 16 6 O -0.18 -2.30 10.28 2.78 0.03 -2.27 16 7 C -0.02 -0.22 7.07 -36.91 -0.26 -0.48 16 8 C 0.60 8.59 7.79 -12.72 -0.10 8.49 16 9 O -0.52 -8.72 16.83 5.23 0.09 -8.63 16 10 N -0.70 -9.72 5.44 -61.52 -0.33 -10.06 16 11 C 0.13 1.89 5.37 -4.04 -0.02 1.87 16 12 C 0.06 1.09 2.88 -26.36 -0.08 1.01 16 13 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 14 C 0.12 2.49 6.05 -3.31 -0.02 2.47 16 15 N -0.59 -14.63 3.04 -171.57 -0.52 -15.16 16 16 C -0.26 -6.90 9.65 -15.06 -0.15 -7.04 16 17 H 0.07 1.79 7.89 -52.48 -0.41 1.38 16 18 C 0.00 0.07 4.95 -17.43 -0.09 -0.01 16 19 N -0.90 -25.74 11.14 55.49 0.62 -25.12 16 20 Si 0.91 21.24 29.59 -169.99 -5.03 16.21 16 21 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 22 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 23 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 24 C 0.14 3.27 5.44 -3.53 -0.02 3.25 16 25 C 0.04 0.76 6.99 37.31 0.26 1.02 16 26 O -0.39 -7.22 10.13 -35.23 -0.36 -7.57 16 27 C -0.12 -1.37 10.81 -37.24 -0.40 -1.77 16 28 C -0.14 -1.50 6.38 -105.19 -0.67 -2.17 16 29 C -0.06 -0.53 9.68 -39.62 -0.38 -0.91 16 30 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 31 H 0.07 0.23 8.08 -51.93 -0.42 -0.19 16 32 H 0.07 0.26 8.08 -51.93 -0.42 -0.16 16 33 H 0.14 0.58 8.06 -52.49 -0.42 0.16 16 34 H 0.14 0.93 8.06 -52.49 -0.42 0.51 16 35 H 0.41 5.32 8.06 -40.82 -0.33 4.99 16 36 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 37 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 38 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.06 1.26 7.96 -51.93 -0.41 0.84 16 40 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 41 H 0.09 2.43 6.14 -51.93 -0.32 2.12 16 42 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 45 H 0.17 1.68 8.06 -52.49 -0.42 1.26 16 46 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 LS Contribution 385.68 15.07 5.81 5.81 Total: -1.00 -31.80 385.68 -9.46 -41.27 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: -6.52 Total: 3.12 kcal Atomic # 6 Polarization: 5.64 SS G_CDS: -3.24 Total: 2.40 kcal Atomic # 7 Polarization: -50.10 SS G_CDS: -0.24 Total: -50.34 kcal Atomic # 8 Polarization: -18.23 SS G_CDS: -0.24 Total: -18.47 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.03 Total: 16.21 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -31.80 -9.46 -41.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035608910.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.959 kcal (2) G-P(sol) polarization free energy of solvation -31.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds