Wall clock time and date at job start Wed Apr 1 2020 02:25:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38838 * 119.77776 * 2 1 4 4 C 1.37797 * 120.74508 * 179.77472 * 3 2 1 5 5 C 1.39031 * 119.85238 * 0.48632 * 4 3 2 6 6 O 1.34718 * 133.24382 * 179.77731 * 5 4 3 7 7 C 1.34943 * 110.86349 * 179.97438 * 6 5 4 8 8 C 1.46984 * 125.13000 * 179.97438 * 7 6 5 9 9 O 1.21653 * 119.99575 * 180.02562 * 8 7 6 10 10 N 1.34768 * 119.99886 * 0.02661 * 8 7 6 11 11 C 1.46500 * 119.99832 * 180.02562 * 10 8 7 12 12 C 1.52997 * 109.47456 * 180.02562 * 11 10 8 13 13 H 1.09006 * 109.51244 * 305.00378 * 12 11 10 14 14 C 1.53297 * 109.51826 * 184.89598 * 12 11 10 15 15 N 1.47144 * 108.38704 * 187.77260 * 14 12 11 16 16 C 1.36942 * 120.98124 * 230.55949 * 15 14 12 17 17 H 1.07995 * 120.00323 * 26.23858 * 16 15 14 18 18 C 1.38819 * 119.99680 * 206.24074 * 16 15 14 19 19 N 1.31614 * 120.00164 * 16.91022 * 18 16 15 20 20 Si 1.86796 * 119.99726 * 196.90656 * 18 16 15 21 21 H 1.48501 * 109.47210 * 90.00440 * 20 18 16 22 22 H 1.48503 * 109.47109 * 210.00327 * 20 18 16 23 23 H 1.48499 * 109.47175 * 329.99949 * 20 18 16 24 24 C 1.47151 * 118.03569 * 50.53848 * 15 14 12 25 25 C 1.53292 * 108.38281 * 309.46046 * 24 15 14 26 26 O 1.42955 * 109.26440 * 52.28253 * 25 24 15 27 27 C 1.35812 * 109.73699 * 0.02562 * 7 6 5 28 28 C 1.40726 * 119.16128 * 359.77278 * 5 4 3 29 29 C 1.36621 * 119.78006 * 180.27867 * 2 1 3 30 30 H 1.08995 * 109.46869 * 269.71910 * 1 2 3 31 31 H 1.09005 * 109.46983 * 149.72151 * 1 2 3 32 32 H 1.09003 * 109.47082 * 29.72203 * 1 2 3 33 33 H 1.07998 * 119.63039 * 0.02562 * 3 2 1 34 34 H 1.07994 * 120.07850 * 180.25873 * 4 3 2 35 35 H 0.96997 * 120.00142 * 0.02562 * 10 8 7 36 36 H 1.08998 * 109.47215 * 300.00426 * 11 10 8 37 37 H 1.09003 * 109.47400 * 60.00272 * 11 10 8 38 38 H 1.08999 * 109.67776 * 307.50352 * 14 12 11 39 39 H 1.09005 * 109.67678 * 68.01545 * 14 12 11 40 40 H 0.97002 * 120.00223 * 180.02562 * 19 18 16 41 41 H 1.08996 * 109.68520 * 69.18575 * 24 15 14 42 42 H 1.09002 * 109.68235 * 189.70493 * 24 15 14 43 43 H 1.09002 * 109.51203 * 172.22736 * 25 24 15 44 44 H 1.09001 * 109.51542 * 292.37786 * 25 24 15 45 45 H 1.07999 * 126.96024 * 179.97438 * 27 7 6 46 46 H 1.08001 * 120.14512 * 359.97438 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1965 1.2051 0.0000 4 6 3.5743 1.2283 0.0047 5 6 4.2866 0.0344 -0.0008 6 8 5.6023 -0.2554 -0.0022 7 6 5.8003 -1.5902 -0.0077 8 6 7.1136 -2.2504 -0.0112 9 8 7.1837 -3.4649 -0.0166 10 7 8.2398 -1.5103 -0.0084 11 6 9.5487 -2.1683 -0.0124 12 6 10.6523 -1.1087 -0.0073 13 1 10.5064 -0.4270 -0.8453 14 6 12.0188 -1.7917 -0.1348 15 7 13.0654 -0.7760 0.0603 16 6 14.0927 -0.6413 -0.8352 17 1 13.9556 -0.9418 -1.8634 18 6 15.3102 -0.1186 -0.4212 19 7 15.6005 -0.0628 0.8613 20 14 16.5366 0.5055 -1.6844 21 1 16.2889 1.9463 -1.9451 22 1 17.9164 0.3265 -1.1654 23 1 16.3796 -0.2601 -2.9471 24 6 12.9754 0.0910 1.2458 25 6 11.5624 0.6824 1.3061 26 8 10.6044 -0.3751 1.2188 27 6 4.6032 -2.2315 -0.0107 28 6 3.5826 -1.1841 -0.0062 29 6 2.1856 -1.1858 -0.0058 30 1 -0.3633 -0.0050 1.0276 31 1 -0.3633 -0.8875 -0.5182 32 1 -0.3633 0.8925 -0.5095 33 1 1.6469 2.1347 0.0004 34 1 4.0997 2.1718 0.0088 35 1 8.1838 -0.5419 -0.0036 36 1 9.6431 -2.7949 0.8745 37 1 9.6420 -2.7863 -0.9054 38 1 12.1137 -2.5674 0.6250 39 1 12.1166 -2.2347 -1.1260 40 1 16.4511 0.3029 1.1506 41 1 13.1666 -0.4951 2.1447 42 1 13.7074 0.8950 1.1691 43 1 11.4309 1.2160 2.2474 44 1 11.4202 1.3712 0.4733 45 1 4.4383 -3.2989 -0.0156 46 1 1.6443 -2.1204 -0.0099 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035608913.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:25:04 Heat of formation + Delta-G solvation = -28.481591 kcal Electronic energy + Delta-G solvation = -28846.698688 eV Core-core repulsion = 24703.521148 eV Total energy + Delta-G solvation = -4143.177540 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.78407 -39.74043 -38.63360 -38.38415 -35.09900 -34.35909 -33.14027 -32.61434 -31.65564 -30.83594 -29.90474 -27.77995 -27.19019 -25.80004 -24.01585 -23.18738 -22.23100 -21.95078 -21.62562 -20.76436 -19.73664 -18.37758 -17.77480 -16.95673 -16.69131 -16.21201 -15.97899 -15.65858 -15.41659 -14.99293 -14.79862 -14.48722 -14.38812 -14.28850 -14.03781 -13.82230 -13.55055 -13.37980 -13.20396 -13.10236 -12.78049 -12.61553 -12.47244 -12.21520 -12.04151 -11.62128 -11.32946 -11.15590 -10.90010 -10.77929 -10.54197 -10.50926 -10.41496 -10.27880 -10.01427 -9.70607 -9.21611 -9.10855 -8.82145 -8.57944 -8.57320 -6.79796 -5.87662 -3.31662 0.26153 0.94174 1.56056 2.18750 2.97666 3.01589 3.27446 3.32388 3.39437 3.40752 4.07923 4.19804 4.27770 4.39809 4.39981 4.63998 4.73716 4.83948 4.97595 5.04905 5.07561 5.18168 5.25412 5.29609 5.41962 5.46241 5.47774 5.52180 5.72942 5.74389 5.77979 5.80555 5.95843 5.98245 6.10254 6.12025 6.16885 6.22697 6.33049 6.36504 6.44541 6.69628 6.71013 7.06424 7.35320 7.48349 7.67554 7.80933 7.92988 8.29660 9.07726 9.70320 10.26932 11.20434 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.024589 B = 0.001874 C = 0.001813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.433627 B =14937.725387 C =15440.574451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.107 4.107 3 C -0.084 4.084 4 C -0.105 4.105 5 C 0.065 3.935 6 O -0.182 6.182 7 C -0.017 4.017 8 C 0.595 3.405 9 O -0.519 6.519 10 N -0.704 5.704 11 C 0.128 3.872 12 C 0.064 3.936 13 H 0.060 0.940 14 C 0.122 3.878 15 N -0.593 5.593 16 C -0.257 4.257 17 H 0.070 0.930 18 C 0.003 3.997 19 N -0.902 5.902 20 Si 0.906 3.094 21 H -0.287 1.287 22 H -0.290 1.290 23 H -0.278 1.278 24 C 0.139 3.861 25 C 0.040 3.960 26 O -0.390 6.390 27 C -0.118 4.118 28 C -0.139 4.139 29 C -0.063 4.063 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.137 0.863 34 H 0.137 0.863 35 H 0.410 0.590 36 H 0.081 0.919 37 H 0.087 0.913 38 H 0.031 0.969 39 H 0.065 0.935 40 H 0.255 0.745 41 H 0.029 0.971 42 H 0.095 0.905 43 H 0.082 0.918 44 H 0.041 0.959 45 H 0.171 0.829 46 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.470 2.116 -1.211 28.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.107 4.107 3 C -0.102 4.102 4 C -0.123 4.123 5 C 0.017 3.983 6 O -0.084 6.084 7 C -0.067 4.067 8 C 0.380 3.620 9 O -0.397 6.397 10 N -0.353 5.353 11 C 0.005 3.995 12 C 0.004 3.996 13 H 0.078 0.922 14 C -0.005 4.005 15 N -0.317 5.317 16 C -0.386 4.386 17 H 0.087 0.913 18 C -0.196 4.196 19 N -0.546 5.546 20 Si 0.736 3.264 21 H -0.214 1.214 22 H -0.216 1.216 23 H -0.204 1.204 24 C 0.013 3.987 25 C -0.038 4.038 26 O -0.309 6.309 27 C -0.139 4.139 28 C -0.140 4.140 29 C -0.081 4.081 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.154 0.846 34 H 0.154 0.846 35 H 0.245 0.755 36 H 0.099 0.901 37 H 0.105 0.895 38 H 0.049 0.951 39 H 0.083 0.917 40 H 0.065 0.935 41 H 0.047 0.953 42 H 0.113 0.887 43 H 0.100 0.900 44 H 0.059 0.941 45 H 0.188 0.812 46 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -28.085 1.453 -1.002 28.140 hybrid contribution 0.935 0.849 -0.687 1.438 sum -27.150 2.303 -1.690 27.299 Atomic orbital electron populations 1.20764 0.90466 1.03001 1.02528 1.19543 0.96556 0.92635 1.01984 1.20894 0.92429 0.98146 0.98778 1.20005 0.93104 0.94863 1.04374 1.19752 0.80917 0.95741 1.01914 1.84040 1.24605 1.23667 1.76090 1.22080 0.96004 0.80443 1.08199 1.16653 0.81418 0.86228 0.77701 1.90891 1.85795 1.12063 1.50936 1.45899 1.05615 1.11030 1.72776 1.21565 0.79417 0.95097 1.03437 1.22820 0.95700 0.93349 0.87755 0.92199 1.21434 0.87276 0.91794 1.00010 1.44059 1.25808 1.35358 1.26488 1.19213 0.89940 1.39456 0.89971 0.91271 1.25053 0.96646 1.01933 0.95980 1.70032 1.23133 1.48133 1.13331 0.86230 0.80435 0.78984 0.80763 1.21374 1.21649 1.20355 1.21453 0.92483 0.95518 0.89217 1.23333 0.91532 0.88695 1.00245 1.87792 1.57815 1.47905 1.37393 1.22718 0.89160 1.00138 1.01892 1.19905 0.94577 0.92455 1.07055 1.20213 0.91013 0.98389 0.98448 0.91048 0.91404 0.91338 0.84563 0.84562 0.75463 0.90055 0.89524 0.95116 0.91668 0.93459 0.95309 0.88724 0.89987 0.94068 0.81198 0.85198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.48 10.00 36.01 0.36 -0.12 16 2 C -0.11 -0.76 5.85 -104.98 -0.61 -1.37 16 3 C -0.08 -0.59 9.66 -39.52 -0.38 -0.97 16 4 C -0.11 -0.91 10.07 -39.45 -0.40 -1.31 16 5 C 0.07 0.73 7.41 -38.35 -0.28 0.45 16 6 O -0.18 -2.29 10.28 2.78 0.03 -2.26 16 7 C -0.02 -0.22 7.07 -36.91 -0.26 -0.48 16 8 C 0.60 8.56 7.79 -12.72 -0.10 8.46 16 9 O -0.52 -8.69 16.83 5.23 0.09 -8.61 16 10 N -0.70 -9.68 5.50 -61.53 -0.34 -10.02 16 11 C 0.13 1.89 5.34 -4.04 -0.02 1.87 16 12 C 0.06 1.09 2.81 -26.58 -0.07 1.02 16 13 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 14 C 0.12 2.49 6.02 -3.54 -0.02 2.47 16 15 N -0.59 -14.63 3.05 -171.83 -0.52 -15.16 16 16 C -0.26 -6.89 9.65 -15.05 -0.15 -7.04 16 17 H 0.07 1.81 7.88 -52.49 -0.41 1.40 16 18 C 0.00 0.07 4.95 -17.43 -0.09 -0.01 16 19 N -0.90 -25.74 11.14 55.49 0.62 -25.12 16 20 Si 0.91 21.28 29.59 -169.99 -5.03 16.25 16 21 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 22 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 23 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 24 C 0.14 3.27 5.45 -3.54 -0.02 3.25 16 25 C 0.04 0.76 6.98 37.31 0.26 1.02 16 26 O -0.39 -7.24 10.33 -35.23 -0.36 -7.61 16 27 C -0.12 -1.36 10.81 -37.24 -0.40 -1.76 16 28 C -0.14 -1.50 6.38 -105.20 -0.67 -2.17 16 29 C -0.06 -0.52 9.68 -39.62 -0.38 -0.91 16 30 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.07 0.25 8.08 -51.93 -0.42 -0.17 16 32 H 0.07 0.23 8.08 -51.93 -0.42 -0.19 16 33 H 0.14 0.58 8.06 -52.49 -0.42 0.15 16 34 H 0.14 0.93 8.06 -52.49 -0.42 0.50 16 35 H 0.41 5.24 8.19 -40.82 -0.33 4.90 16 36 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 37 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.06 1.26 7.96 -51.93 -0.41 0.84 16 40 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 41 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.09 2.44 6.14 -51.93 -0.32 2.12 16 43 H 0.08 1.38 8.14 -51.93 -0.42 0.95 16 44 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 45 H 0.17 1.68 8.06 -52.49 -0.42 1.26 16 46 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 LS Contribution 385.95 15.07 5.82 5.82 Total: -1.00 -31.82 385.95 -9.47 -41.29 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: -6.53 Total: 3.01 kcal Atomic # 6 Polarization: 5.63 SS G_CDS: -3.24 Total: 2.39 kcal Atomic # 7 Polarization: -50.05 SS G_CDS: -0.24 Total: -50.30 kcal Atomic # 8 Polarization: -18.22 SS G_CDS: -0.25 Total: -18.47 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.03 Total: 16.25 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -31.82 -9.47 -41.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035608913.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.813 kcal (2) G-P(sol) polarization free energy of solvation -31.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds