Wall clock time and date at job start Wed Apr 1 2020 02:25:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38838 * 119.77776 * 2 1 4 4 C 1.37797 * 120.74508 * 179.77472 * 3 2 1 5 5 C 1.39031 * 119.85238 * 0.48632 * 4 3 2 6 6 O 1.34718 * 133.24382 * 179.77731 * 5 4 3 7 7 C 1.34943 * 110.86349 * 179.97438 * 6 5 4 8 8 C 1.46984 * 125.13000 * 179.97438 * 7 6 5 9 9 O 1.21653 * 119.99575 * 180.02562 * 8 7 6 10 10 N 1.34768 * 119.99886 * 0.02661 * 8 7 6 11 11 C 1.46500 * 119.99832 * 180.02562 * 10 8 7 12 12 C 1.52997 * 109.47456 * 180.02562 * 11 10 8 13 13 H 1.09006 * 109.51244 * 305.00378 * 12 11 10 14 14 C 1.53297 * 109.51826 * 184.89598 * 12 11 10 15 15 N 1.47144 * 108.38704 * 187.77260 * 14 12 11 16 16 C 1.36942 * 120.98124 * 230.55949 * 15 14 12 17 17 H 1.07995 * 120.00323 * 26.23858 * 16 15 14 18 18 C 1.38819 * 119.99680 * 206.24074 * 16 15 14 19 19 N 1.31614 * 120.00164 * 16.91022 * 18 16 15 20 20 Si 1.86796 * 119.99726 * 196.90656 * 18 16 15 21 21 H 1.48501 * 109.47210 * 90.00440 * 20 18 16 22 22 H 1.48503 * 109.47109 * 210.00327 * 20 18 16 23 23 H 1.48499 * 109.47175 * 329.99949 * 20 18 16 24 24 C 1.47151 * 118.03569 * 50.53848 * 15 14 12 25 25 C 1.53292 * 108.38281 * 309.46046 * 24 15 14 26 26 O 1.42955 * 109.26440 * 52.28253 * 25 24 15 27 27 C 1.35812 * 109.73699 * 0.02562 * 7 6 5 28 28 C 1.40726 * 119.16128 * 359.77278 * 5 4 3 29 29 C 1.36621 * 119.78006 * 180.27867 * 2 1 3 30 30 H 1.08995 * 109.46869 * 269.71910 * 1 2 3 31 31 H 1.09005 * 109.46983 * 149.72151 * 1 2 3 32 32 H 1.09003 * 109.47082 * 29.72203 * 1 2 3 33 33 H 1.07998 * 119.63039 * 0.02562 * 3 2 1 34 34 H 1.07994 * 120.07850 * 180.25873 * 4 3 2 35 35 H 0.96997 * 120.00142 * 0.02562 * 10 8 7 36 36 H 1.08998 * 109.47215 * 300.00426 * 11 10 8 37 37 H 1.09003 * 109.47400 * 60.00272 * 11 10 8 38 38 H 1.08999 * 109.67776 * 307.50352 * 14 12 11 39 39 H 1.09005 * 109.67678 * 68.01545 * 14 12 11 40 40 H 0.97002 * 120.00223 * 180.02562 * 19 18 16 41 41 H 1.08996 * 109.68520 * 69.18575 * 24 15 14 42 42 H 1.09002 * 109.68235 * 189.70493 * 24 15 14 43 43 H 1.09002 * 109.51203 * 172.22736 * 25 24 15 44 44 H 1.09001 * 109.51542 * 292.37786 * 25 24 15 45 45 H 1.07999 * 126.96024 * 179.97438 * 27 7 6 46 46 H 1.08001 * 120.14512 * 359.97438 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1965 1.2051 0.0000 4 6 3.5743 1.2283 0.0047 5 6 4.2866 0.0344 -0.0008 6 8 5.6023 -0.2554 -0.0022 7 6 5.8003 -1.5902 -0.0077 8 6 7.1136 -2.2504 -0.0112 9 8 7.1837 -3.4649 -0.0166 10 7 8.2398 -1.5103 -0.0084 11 6 9.5487 -2.1683 -0.0124 12 6 10.6523 -1.1087 -0.0073 13 1 10.5064 -0.4270 -0.8453 14 6 12.0188 -1.7917 -0.1348 15 7 13.0654 -0.7760 0.0603 16 6 14.0927 -0.6413 -0.8352 17 1 13.9556 -0.9418 -1.8634 18 6 15.3102 -0.1186 -0.4212 19 7 15.6005 -0.0628 0.8613 20 14 16.5366 0.5055 -1.6844 21 1 16.2889 1.9463 -1.9451 22 1 17.9164 0.3265 -1.1654 23 1 16.3796 -0.2601 -2.9471 24 6 12.9754 0.0910 1.2458 25 6 11.5624 0.6824 1.3061 26 8 10.6044 -0.3751 1.2188 27 6 4.6032 -2.2315 -0.0107 28 6 3.5826 -1.1841 -0.0062 29 6 2.1856 -1.1858 -0.0058 30 1 -0.3633 -0.0050 1.0276 31 1 -0.3633 -0.8875 -0.5182 32 1 -0.3633 0.8925 -0.5095 33 1 1.6469 2.1347 0.0004 34 1 4.0997 2.1718 0.0088 35 1 8.1838 -0.5419 -0.0036 36 1 9.6431 -2.7949 0.8745 37 1 9.6420 -2.7863 -0.9054 38 1 12.1137 -2.5674 0.6250 39 1 12.1166 -2.2347 -1.1260 40 1 16.4511 0.3029 1.1506 41 1 13.1666 -0.4951 2.1447 42 1 13.7074 0.8950 1.1691 43 1 11.4309 1.2160 2.2474 44 1 11.4202 1.3712 0.4733 45 1 4.4383 -3.2989 -0.0156 46 1 1.6443 -2.1204 -0.0099 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035608913.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:25:03 Heat of formation + Delta-G solvation = -48.407897 kcal Electronic energy + Delta-G solvation = -28847.562757 eV Core-core repulsion = 24703.521148 eV Total energy + Delta-G solvation = -4144.041609 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.58999 -40.91825 -39.99764 -39.19173 -36.60198 -35.93559 -33.93105 -33.45620 -33.15374 -32.43934 -30.77690 -29.30023 -28.00536 -27.18351 -25.22867 -24.78817 -23.36203 -22.84069 -22.53044 -21.88080 -21.27398 -19.42347 -18.85324 -18.49862 -17.70875 -17.47600 -17.25208 -16.92291 -16.43791 -16.19785 -16.09528 -15.86672 -15.53326 -15.39663 -15.10768 -15.00773 -14.66317 -14.51865 -14.45105 -14.21311 -14.09194 -13.79314 -13.25009 -13.03107 -12.98550 -12.72815 -12.70996 -12.60546 -12.54950 -12.18566 -12.09807 -11.92618 -11.89943 -11.66482 -11.33170 -11.32907 -10.82325 -10.56792 -10.36576 -9.49998 -9.30999 -8.77542 -7.92492 -5.40003 -0.53450 0.28252 0.74748 1.32257 1.46523 1.47393 1.56577 1.93460 1.97188 2.46838 2.63333 2.73646 3.22381 3.27953 3.45867 3.56788 3.84970 3.88168 3.93570 4.01912 4.03679 4.21424 4.24989 4.38558 4.44237 4.45460 4.48833 4.57517 4.69118 4.71968 4.74657 4.81951 4.87033 4.91778 5.02104 5.07883 5.10897 5.16015 5.22275 5.24396 5.28647 5.53891 5.56143 5.57859 5.59967 5.96702 6.22742 6.27978 6.31372 6.82833 7.04679 7.72686 8.26271 9.13624 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.024589 B = 0.001874 C = 0.001813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.433627 B =14937.725387 C =15440.574451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.106 4.106 3 C -0.074 4.074 4 C -0.118 4.118 5 C 0.041 3.959 6 O -0.194 6.194 7 C -0.044 4.044 8 C 0.600 3.400 9 O -0.549 6.549 10 N -0.699 5.699 11 C 0.138 3.862 12 C 0.077 3.923 13 H 0.069 0.931 14 C 0.117 3.883 15 N -0.612 5.612 16 C -0.267 4.267 17 H 0.074 0.926 18 C -0.050 4.050 19 N -0.936 5.936 20 Si 0.972 3.028 21 H -0.283 1.283 22 H -0.296 1.296 23 H -0.268 1.268 24 C 0.143 3.857 25 C 0.054 3.946 26 O -0.391 6.391 27 C -0.109 4.109 28 C -0.160 4.160 29 C -0.070 4.070 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.083 0.917 33 H 0.169 0.831 34 H 0.151 0.849 35 H 0.416 0.584 36 H 0.073 0.927 37 H 0.100 0.900 38 H 0.021 0.979 39 H 0.075 0.925 40 H 0.252 0.748 41 H 0.000 1.000 42 H 0.068 0.932 43 H 0.108 0.892 44 H 0.050 0.950 45 H 0.180 0.820 46 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.516 3.266 -2.213 31.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.106 4.106 3 C -0.092 4.092 4 C -0.136 4.136 5 C -0.007 4.007 6 O -0.096 6.096 7 C -0.093 4.093 8 C 0.386 3.614 9 O -0.429 6.429 10 N -0.348 5.348 11 C 0.015 3.985 12 C 0.017 3.983 13 H 0.087 0.913 14 C -0.009 4.009 15 N -0.337 5.337 16 C -0.396 4.396 17 H 0.091 0.909 18 C -0.246 4.246 19 N -0.581 5.581 20 Si 0.800 3.200 21 H -0.209 1.209 22 H -0.223 1.223 23 H -0.192 1.192 24 C 0.017 3.983 25 C -0.024 4.024 26 O -0.310 6.310 27 C -0.130 4.130 28 C -0.160 4.160 29 C -0.088 4.088 30 H 0.099 0.901 31 H 0.093 0.907 32 H 0.102 0.898 33 H 0.187 0.813 34 H 0.169 0.831 35 H 0.252 0.748 36 H 0.091 0.909 37 H 0.118 0.882 38 H 0.039 0.961 39 H 0.094 0.906 40 H 0.061 0.939 41 H 0.018 0.982 42 H 0.086 0.914 43 H 0.126 0.874 44 H 0.069 0.931 45 H 0.198 0.802 46 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -31.168 2.609 -2.015 31.342 hybrid contribution 1.706 0.495 -0.361 1.813 sum -29.462 3.104 -2.377 29.720 Atomic orbital electron populations 1.20837 0.88183 1.04176 1.03446 1.19968 0.98201 0.92170 1.00231 1.21366 0.91857 0.99571 0.96393 1.20369 0.93927 0.94681 1.04621 1.20254 0.80514 0.97009 1.02897 1.83981 1.25611 1.23269 1.76759 1.21759 0.95509 0.81044 1.11018 1.16754 0.81920 0.85880 0.76853 1.90863 1.86372 1.13223 1.52465 1.45780 1.05124 1.11268 1.72660 1.21383 0.79241 0.94173 1.03732 1.22680 0.94507 0.93523 0.87563 0.91296 1.21592 0.87917 0.91142 1.00246 1.44330 1.26324 1.36706 1.26310 1.19569 0.90601 1.38834 0.90629 0.90850 1.25832 0.98507 1.02553 0.97663 1.70189 1.23442 1.49363 1.15142 0.85200 0.77659 0.78429 0.78744 1.20949 1.22256 1.19249 1.21310 0.94784 0.94318 0.87851 1.23166 0.88560 0.88611 1.02059 1.87808 1.57172 1.47883 1.38182 1.22986 0.89175 1.00873 0.99935 1.20108 0.95581 0.91951 1.08409 1.20534 0.90141 0.99975 0.98166 0.90110 0.90672 0.89843 0.81314 0.83085 0.74799 0.90912 0.88217 0.96095 0.90634 0.93928 0.98200 0.91371 0.87412 0.93147 0.80218 0.83397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.56 10.00 71.24 0.71 0.16 16 2 C -0.11 -1.19 5.85 -20.10 -0.12 -1.31 16 3 C -0.07 -0.81 9.66 22.31 0.22 -0.59 16 4 C -0.12 -1.83 10.07 22.36 0.23 -1.61 16 5 C 0.04 0.90 7.41 23.07 0.17 1.07 16 6 O -0.19 -4.87 10.28 -12.98 -0.13 -5.00 16 7 C -0.04 -1.14 7.07 24.00 0.17 -0.97 16 8 C 0.60 17.34 7.79 86.54 0.67 18.01 16 9 O -0.55 -18.57 16.83 -4.20 -0.07 -18.64 16 10 N -0.70 -18.92 5.50 -466.81 -2.57 -21.49 16 11 C 0.14 4.00 5.34 86.38 0.46 4.46 16 12 C 0.08 2.57 2.81 30.69 0.09 2.66 16 13 H 0.07 2.23 8.14 -2.38 -0.02 2.21 16 14 C 0.12 4.79 6.02 86.36 0.52 5.31 16 15 N -0.61 -30.55 3.05 -697.56 -2.13 -32.68 16 16 C -0.27 -14.42 9.65 84.03 0.81 -13.61 16 17 H 0.07 3.82 7.88 -2.91 -0.02 3.80 16 18 C -0.05 -2.75 4.95 84.86 0.42 -2.33 16 19 N -0.94 -54.82 11.14 21.65 0.24 -54.58 16 20 Si 0.97 44.10 29.59 68.60 2.03 46.13 16 21 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 22 H -0.30 -13.60 7.11 99.48 0.71 -12.89 16 23 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 24 C 0.14 6.89 5.45 86.35 0.47 7.36 16 25 C 0.05 2.00 6.98 72.08 0.50 2.50 16 26 O -0.39 -14.17 10.33 -148.98 -1.54 -15.71 16 27 C -0.11 -2.50 10.81 23.79 0.26 -2.24 16 28 C -0.16 -3.31 6.38 -20.24 -0.13 -3.44 16 29 C -0.07 -1.04 9.68 22.25 0.22 -0.83 16 30 H 0.08 0.31 8.14 -2.39 -0.02 0.29 16 31 H 0.07 0.30 8.08 -2.38 -0.02 0.28 16 32 H 0.08 0.21 8.08 -2.39 -0.02 0.19 16 33 H 0.17 0.69 8.06 -2.91 -0.02 0.67 16 34 H 0.15 1.77 8.06 -2.91 -0.02 1.75 16 35 H 0.42 10.35 8.19 -92.71 -0.76 9.59 16 36 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 37 H 0.10 2.65 8.14 -2.39 -0.02 2.63 16 38 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.08 2.88 7.96 -2.38 -0.02 2.86 16 40 H 0.25 14.26 8.31 -92.71 -0.77 13.49 16 41 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 42 H 0.07 3.63 6.14 -2.39 -0.01 3.62 16 43 H 0.11 3.46 8.14 -2.39 -0.02 3.44 16 44 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 45 H 0.18 3.53 8.06 -2.91 -0.02 3.50 16 46 H 0.15 1.54 8.06 -2.91 -0.02 1.52 16 Total: -1.00 -70.00 385.95 1.74 -68.26 By element: Atomic # 1 Polarization: 18.87 SS G_CDS: 0.25 Total: 19.11 kcal Atomic # 6 Polarization: 8.94 SS G_CDS: 5.67 Total: 14.60 kcal Atomic # 7 Polarization: -104.30 SS G_CDS: -4.45 Total: -108.75 kcal Atomic # 8 Polarization: -37.61 SS G_CDS: -1.74 Total: -39.35 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Total: -70.00 1.74 -68.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035608913.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.850 kcal (2) G-P(sol) polarization free energy of solvation -70.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds