Wall clock time and date at job start Wed Apr 1 2020 02:41:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 C 1.37838 * 120.07551 * 2 1 4 4 C 1.38793 * 120.74459 * 179.97438 * 3 2 1 5 5 C 1.36658 * 120.44669 * 0.22582 * 4 3 2 6 6 C 1.39666 * 119.70447 * 359.55452 * 5 4 3 7 7 C 1.46254 * 134.19199 * 180.12308 * 6 5 4 8 8 C 1.35800 * 106.08449 * 180.28641 * 7 6 5 9 9 C 1.46981 * 125.13056 * 180.02562 * 8 7 6 10 10 O 1.21653 * 119.99844 * 0.02562 * 9 8 7 11 11 N 1.34772 * 119.99883 * 179.97438 * 9 8 7 12 12 C 1.46502 * 119.99663 * 179.97438 * 11 9 8 13 13 C 1.53001 * 109.46871 * 180.02562 * 12 11 9 14 14 H 1.09005 * 109.51208 * 305.00053 * 13 12 11 15 15 C 1.53295 * 109.51449 * 184.90037 * 13 12 11 16 16 N 1.47143 * 108.38842 * 187.77166 * 15 13 12 17 17 C 1.36941 * 120.98545 * 230.55251 * 16 15 13 18 18 H 1.08000 * 119.99689 * 26.24787 * 17 16 15 19 19 C 1.38812 * 120.00135 * 206.23960 * 17 16 15 20 20 N 1.31610 * 120.00083 * 16.91116 * 19 17 16 21 21 Si 1.86802 * 119.99826 * 196.90938 * 19 17 16 22 22 H 1.48496 * 109.47281 * 89.99930 * 21 19 17 23 23 H 1.48504 * 109.47260 * 210.00410 * 21 19 17 24 24 H 1.48501 * 109.47198 * 330.00224 * 21 19 17 25 25 C 1.47155 * 118.03573 * 50.53627 * 16 15 13 26 26 C 1.53295 * 108.38196 * 309.46279 * 25 16 15 27 27 O 1.42958 * 109.51537 * 65.10182 * 13 12 11 28 28 O 1.34950 * 109.74307 * 0.02562 * 8 7 6 29 29 C 1.34722 * 110.86355 * 359.97438 * 28 8 7 30 30 H 1.08997 * 109.47479 * 270.02856 * 1 2 3 31 31 H 1.09007 * 109.47270 * 30.02298 * 1 2 3 32 32 H 1.09004 * 109.47478 * 150.02518 * 1 2 3 33 33 H 1.07995 * 119.62571 * 359.95347 * 3 2 1 34 34 H 1.08005 * 119.77725 * 180.02562 * 4 3 2 35 35 H 1.07994 * 120.15042 * 179.70323 * 5 4 3 36 36 H 1.08009 * 126.95638 * 0.26909 * 7 6 5 37 37 H 0.97002 * 120.00197 * 0.02562 * 11 9 8 38 38 H 1.08993 * 109.47649 * 300.00042 * 12 11 9 39 39 H 1.09001 * 109.47287 * 60.00412 * 12 11 9 40 40 H 1.08999 * 109.68278 * 307.49941 * 15 13 12 41 41 H 1.09009 * 109.68078 * 68.01153 * 15 13 12 42 42 H 0.97002 * 120.00157 * 179.97438 * 20 19 17 43 43 H 1.08999 * 109.68287 * 69.18565 * 25 16 15 44 44 H 1.08999 * 109.67993 * 189.70436 * 25 16 15 45 45 H 1.09006 * 109.51191 * 172.22426 * 26 25 16 46 46 H 1.08998 * 109.51503 * 292.38088 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1977 1.1928 0.0000 4 6 3.5855 1.2090 0.0005 5 6 4.2917 0.0391 -0.0036 6 6 3.6108 -1.1804 0.0011 7 6 4.0293 -2.5817 0.0011 8 6 2.8867 -3.3157 0.0007 9 6 2.8248 -4.7842 0.0011 10 8 3.8517 -5.4363 0.0023 11 7 1.6302 -5.4082 0.0011 12 6 1.5685 -6.8719 0.0009 13 6 0.1057 -7.3206 0.0003 14 1 -0.4155 -6.8641 0.8418 15 6 0.0383 -8.8471 0.1235 16 7 -1.3590 -9.2669 -0.0673 17 6 -1.9728 -10.1017 0.8281 18 1 -1.6396 -10.1311 1.8549 19 6 -3.0234 -10.9099 0.4158 20 7 -3.2185 -11.1325 -0.8666 21 14 -4.1602 -11.6817 1.6813 22 1 -5.2975 -10.7652 1.9493 23 1 -4.6771 -12.9728 1.1604 24 1 -3.4099 -11.9207 2.9403 25 6 -2.0774 -8.7630 -1.2485 26 6 -1.9070 -7.2406 -1.3049 27 8 -0.5167 -6.9182 -1.2221 28 8 1.8167 -2.4933 -0.0002 29 6 2.2034 -1.2028 0.0002 30 1 -0.3634 0.0005 1.0276 31 1 -0.3634 0.8898 -0.5142 32 1 -0.3634 -0.8902 -0.5134 33 1 1.6528 2.1252 -0.0008 34 1 4.1109 2.1527 0.0009 35 1 5.3715 0.0573 -0.0080 36 1 5.0422 -2.9569 0.0012 37 1 0.8113 -4.8882 0.0004 38 1 2.0664 -7.2565 -0.8891 39 1 2.0665 -7.2567 0.8908 40 1 0.6669 -9.3052 -0.6402 41 1 0.3818 -9.1511 1.1124 42 1 -3.9524 -11.6976 -1.1546 43 1 -1.6619 -9.2125 -2.1504 44 1 -3.1356 -9.0118 -1.1683 45 1 -2.3130 -6.8633 -2.2435 46 1 -2.4363 -6.7838 -0.4686 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035617166.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:41:32 Heat of formation + Delta-G solvation = -28.273674 kcal Electronic energy + Delta-G solvation = -29162.869350 eV Core-core repulsion = 25019.700827 eV Total energy + Delta-G solvation = -4143.168524 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.80534 -39.74444 -38.54782 -38.27779 -35.10701 -34.36785 -33.94193 -31.74417 -31.69013 -30.89653 -29.91495 -27.62836 -27.27260 -25.86564 -23.87070 -23.17077 -22.99471 -21.81719 -21.05582 -20.78881 -19.73035 -18.31476 -17.80884 -16.96206 -16.72372 -16.31387 -16.02363 -15.84189 -15.39527 -14.99556 -14.82184 -14.41455 -14.35098 -14.11613 -13.83052 -13.74870 -13.50661 -13.35020 -13.20513 -13.10521 -12.78427 -12.73127 -12.46888 -12.28812 -12.02861 -11.62515 -11.34561 -11.15903 -10.90339 -10.78320 -10.51307 -10.41948 -10.36201 -10.28179 -10.01830 -9.71084 -9.22483 -9.11389 -8.95093 -8.58283 -8.47725 -6.80197 -5.87995 -3.32010 0.25659 0.97867 1.54609 2.18008 2.97302 3.01289 3.30007 3.32131 3.39178 3.40501 4.10721 4.18141 4.23438 4.39625 4.47208 4.61547 4.78595 4.85261 4.99159 5.06733 5.15430 5.19331 5.28845 5.29268 5.41414 5.41583 5.45952 5.64517 5.73435 5.75909 5.83355 5.95418 5.97061 5.98219 6.05498 6.09756 6.16204 6.22436 6.32539 6.36290 6.44078 6.69700 6.70769 7.05995 7.34903 7.47931 7.67201 7.80442 7.92658 8.29340 9.07362 9.69950 10.26546 11.20128 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.020303 B = 0.002068 C = 0.001960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.770744 B =13534.425921 C =14281.065985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.074 4.074 3 C -0.090 4.090 4 C -0.134 4.134 5 C -0.067 4.067 6 C -0.140 4.140 7 C -0.118 4.118 8 C -0.018 4.018 9 C 0.596 3.404 10 O -0.519 6.519 11 N -0.704 5.704 12 C 0.128 3.872 13 C 0.064 3.936 14 H 0.060 0.940 15 C 0.122 3.878 16 N -0.594 5.594 17 C -0.256 4.256 18 H 0.070 0.930 19 C 0.002 3.998 20 N -0.902 5.902 21 Si 0.906 3.094 22 H -0.287 1.287 23 H -0.290 1.290 24 H -0.278 1.278 25 C 0.139 3.861 26 C 0.040 3.960 27 O -0.390 6.390 28 O -0.181 6.181 29 C 0.070 3.930 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.136 0.864 34 H 0.131 0.869 35 H 0.130 0.870 36 H 0.171 0.829 37 H 0.410 0.590 38 H 0.081 0.919 39 H 0.087 0.913 40 H 0.031 0.969 41 H 0.065 0.935 42 H 0.255 0.745 43 H 0.029 0.971 44 H 0.095 0.905 45 H 0.082 0.918 46 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.575 25.050 1.251 27.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.074 4.074 3 C -0.108 4.108 4 C -0.152 4.152 5 C -0.085 4.085 6 C -0.141 4.141 7 C -0.139 4.139 8 C -0.068 4.068 9 C 0.380 3.620 10 O -0.397 6.397 11 N -0.353 5.353 12 C 0.005 3.995 13 C 0.004 3.996 14 H 0.078 0.922 15 C -0.005 4.005 16 N -0.317 5.317 17 C -0.385 4.385 18 H 0.087 0.913 19 C -0.197 4.197 20 N -0.546 5.546 21 Si 0.736 3.264 22 H -0.214 1.214 23 H -0.217 1.217 24 H -0.203 1.203 25 C 0.013 3.987 26 C -0.038 4.038 27 O -0.309 6.309 28 O -0.082 6.082 29 C 0.021 3.979 30 H 0.093 0.907 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.154 0.846 34 H 0.149 0.851 35 H 0.148 0.852 36 H 0.188 0.812 37 H 0.245 0.755 38 H 0.099 0.901 39 H 0.105 0.895 40 H 0.049 0.951 41 H 0.083 0.917 42 H 0.065 0.935 43 H 0.047 0.953 44 H 0.113 0.887 45 H 0.100 0.900 46 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 10.957 24.386 1.037 26.755 hybrid contribution -1.066 -0.340 0.699 1.319 sum 9.892 24.046 1.736 26.059 Atomic orbital electron populations 1.20780 0.90014 1.03492 1.02948 1.18881 0.96481 0.88268 1.03788 1.20907 0.94229 0.96454 0.99255 1.20777 0.94024 0.98160 1.02281 1.20348 1.00094 0.89975 0.98124 1.19925 0.93025 0.93990 1.07118 1.22728 0.99304 0.90018 1.01825 1.22080 0.85431 0.91025 1.08266 1.16651 0.84537 0.83102 0.77692 1.90891 1.33915 1.63939 1.50929 1.45900 1.08001 1.08625 1.72799 1.21566 0.96480 0.78025 1.03449 1.22816 0.91001 0.97969 0.87820 0.92204 1.21435 0.88617 0.90445 1.00023 1.44066 1.06466 1.54386 1.26825 1.19207 1.13638 1.15642 0.90052 0.91274 1.25057 1.01228 0.97390 0.95985 1.70029 1.31565 1.39699 1.13338 0.86228 0.81013 0.78388 0.80770 1.21364 1.21657 1.20349 1.21455 0.99893 0.88037 0.89290 1.23334 0.80865 0.99348 1.00244 1.87791 1.24275 1.81185 1.37665 1.84029 1.33864 1.14297 1.76038 1.19555 0.92790 0.83368 1.02154 0.90717 0.90902 0.90992 0.84617 0.85096 0.85179 0.81181 0.75481 0.90056 0.89519 0.95116 0.91665 0.93454 0.95308 0.88719 0.89988 0.94070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.84 10.02 36.00 0.36 -0.48 16 2 C -0.07 -0.67 5.89 -104.49 -0.62 -1.28 16 3 C -0.09 -0.64 9.67 -39.52 -0.38 -1.02 16 4 C -0.13 -0.92 9.98 -39.95 -0.40 -1.32 16 5 C -0.07 -0.55 10.06 -39.62 -0.40 -0.95 16 6 C -0.14 -1.51 6.38 -105.19 -0.67 -2.18 16 7 C -0.12 -1.36 10.80 -37.24 -0.40 -1.76 16 8 C -0.02 -0.23 7.07 -36.91 -0.26 -0.49 16 9 C 0.60 8.54 7.79 -12.72 -0.10 8.44 16 10 O -0.52 -8.68 16.83 5.23 0.09 -8.59 16 11 N -0.70 -9.63 5.50 -61.53 -0.34 -9.97 16 12 C 0.13 1.88 5.34 -4.04 -0.02 1.86 16 13 C 0.06 1.09 2.81 -26.58 -0.07 1.02 16 14 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 15 C 0.12 2.49 6.02 -3.54 -0.02 2.47 16 16 N -0.59 -14.62 3.05 -171.83 -0.52 -15.15 16 17 C -0.26 -6.87 9.65 -15.06 -0.15 -7.02 16 18 H 0.07 1.81 7.88 -52.49 -0.41 1.39 16 19 C 0.00 0.06 4.95 -17.43 -0.09 -0.02 16 20 N -0.90 -25.72 11.14 55.49 0.62 -25.10 16 21 Si 0.91 21.25 29.59 -169.99 -5.03 16.22 16 22 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 23 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 24 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 25 C 0.14 3.26 5.45 -3.53 -0.02 3.24 16 26 C 0.04 0.75 6.98 37.31 0.26 1.02 16 27 O -0.39 -7.22 10.33 -35.23 -0.36 -7.58 16 28 O -0.18 -2.26 10.28 2.75 0.03 -2.23 16 29 C 0.07 0.79 7.07 -38.35 -0.27 0.52 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.39 8.09 -51.93 -0.42 -0.03 16 32 H 0.07 0.58 8.09 -51.93 -0.42 0.16 16 33 H 0.14 0.59 8.06 -52.49 -0.42 0.17 16 34 H 0.13 0.54 8.06 -52.48 -0.42 0.12 16 35 H 0.13 0.78 8.06 -52.49 -0.42 0.35 16 36 H 0.17 1.68 8.06 -52.48 -0.42 1.26 16 37 H 0.41 5.20 8.19 -40.82 -0.33 4.87 16 38 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 39 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 40 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 41 H 0.06 1.25 7.96 -51.92 -0.41 0.84 16 42 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 43 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 44 H 0.09 2.44 6.14 -51.93 -0.32 2.12 16 45 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 46 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 385.99 15.07 5.82 5.82 Total: -1.00 -31.79 385.99 -9.48 -41.27 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: -6.53 Total: 3.27 kcal Atomic # 6 Polarization: 5.29 SS G_CDS: -3.25 Total: 2.04 kcal Atomic # 7 Polarization: -49.97 SS G_CDS: -0.24 Total: -50.22 kcal Atomic # 8 Polarization: -18.16 SS G_CDS: -0.25 Total: -18.40 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.03 Total: 16.22 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -31.79 -9.48 -41.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035617166.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.999 kcal (2) G-P(sol) polarization free energy of solvation -31.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds