Wall clock time and date at job start Wed Apr 1 2020 03:07:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35949 * 116.99925 * 2 1 4 4 C 1.38333 * 120.06374 * 359.97438 * 3 2 1 5 5 C 1.38606 * 120.58742 * 180.02562 * 4 3 2 6 6 C 1.37868 * 120.25288 * 359.97438 * 5 4 3 7 7 C 1.39181 * 119.73071 * 0.03143 * 6 5 4 8 8 C 1.47663 * 134.22452 * 179.97438 * 7 6 5 9 9 C 1.47072 * 127.13795 * 359.97438 * 8 7 6 10 10 O 1.21648 * 120.00247 * 0.02562 * 9 8 7 11 11 N 1.34778 * 120.00016 * 179.97438 * 9 8 7 12 12 C 1.46502 * 119.99873 * 180.02562 * 11 9 8 13 13 C 1.53000 * 110.91392 * 62.45132 * 12 11 9 14 14 C 1.55448 * 111.01096 * 186.50321 * 12 11 9 15 15 C 1.54321 * 102.96961 * 82.52411 * 14 12 11 16 16 N 1.47026 * 107.26791 * 22.19024 * 15 14 12 17 17 C 1.36940 * 125.64258 * 181.03445 * 16 15 14 18 18 H 1.08003 * 119.99660 * 180.02562 * 17 16 15 19 19 C 1.38811 * 120.00559 * 0.02875 * 17 16 15 20 20 N 1.31617 * 119.99776 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00230 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.46543 * 89.99925 * 21 19 17 23 23 H 1.48496 * 109.46962 * 209.99740 * 21 19 17 24 24 H 1.48497 * 109.47197 * 330.00191 * 21 19 17 25 25 C 1.47419 * 108.70576 * 1.06162 * 16 15 14 26 26 C 1.36076 * 105.72531 * 180.24249 * 8 7 6 27 27 O 1.33777 * 109.82858 * 359.60246 * 26 8 7 28 28 C 1.34959 * 111.33738 * 0.41958 * 27 26 8 29 29 H 1.08995 * 109.46798 * 299.99851 * 1 2 3 30 30 H 1.09002 * 109.47345 * 59.99973 * 1 2 3 31 31 H 1.08999 * 109.46764 * 179.97438 * 1 2 3 32 32 H 1.07998 * 119.70246 * 0.02562 * 4 3 2 33 33 H 1.08004 * 119.87280 * 179.97438 * 5 4 3 34 34 H 1.07994 * 120.13552 * 180.02562 * 6 5 4 35 35 H 0.97001 * 120.00073 * 0.02562 * 11 9 8 36 36 H 1.09000 * 109.47194 * 297.54709 * 13 12 11 37 37 H 1.09001 * 109.47578 * 57.55154 * 13 12 11 38 38 H 1.09003 * 109.46933 * 177.54882 * 13 12 11 39 39 H 1.08998 * 110.70855 * 324.15215 * 14 12 11 40 40 H 1.08998 * 110.85957 * 200.96831 * 14 12 11 41 41 H 1.08998 * 109.88101 * 262.77542 * 15 14 12 42 42 H 1.08997 * 110.01327 * 141.67909 * 15 14 12 43 43 H 0.97004 * 120.00521 * 179.97438 * 20 19 17 44 44 H 1.09002 * 110.36926 * 94.70918 * 25 16 15 45 45 H 1.08995 * 110.36556 * 216.92202 * 25 16 15 46 46 H 1.08002 * 125.08692 * 179.72314 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2941 2.3723 -0.0005 5 6 1.9120 3.6130 -0.0011 6 6 3.2877 3.7038 -0.0006 7 6 4.0560 2.5433 -0.0001 8 6 5.5069 2.2688 0.0000 9 6 6.5974 3.2556 -0.0009 10 8 6.3415 4.4449 -0.0013 11 7 7.8802 2.8424 -0.0001 12 6 8.9664 3.8255 -0.0004 13 6 8.9273 4.6829 1.2662 14 6 10.3472 3.1304 -0.1638 15 6 10.4534 2.9255 -1.6896 16 7 9.5521 3.8982 -2.3244 17 6 9.3402 4.0292 -3.6710 18 1 8.6551 4.7785 -4.0394 19 6 10.0057 3.1991 -4.5624 20 7 10.8409 2.2862 -4.1135 21 14 9.7160 3.3774 -6.3992 22 1 10.6891 4.3478 -6.9617 23 1 9.8942 2.0589 -7.0587 24 1 8.3345 3.8673 -6.6372 25 6 8.9148 4.7095 -1.2714 26 6 5.6257 0.9132 -0.0051 27 8 4.4117 0.3512 0.0005 28 6 3.4380 1.2858 0.0003 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 0.2158 2.3114 -0.0005 33 1 1.3135 4.5121 -0.0019 34 1 3.7671 4.6715 -0.0006 35 1 8.0843 1.8941 0.0006 36 1 7.9942 5.2456 1.2954 37 1 8.9908 4.0388 2.1432 38 1 9.7692 5.3754 1.2622 39 1 10.3603 2.1723 0.3558 40 1 11.1504 3.7735 0.1958 41 1 10.1476 1.9121 -1.9497 42 1 11.4778 3.0994 -2.0189 43 1 11.3057 1.7058 -4.7364 44 1 9.4725 5.6328 -1.1141 45 1 7.8814 4.9319 -1.5371 46 1 6.5603 0.3719 -0.0107 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046318708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:45 Heat of formation + Delta-G solvation = -6.060644 kcal Electronic energy + Delta-G solvation = -30342.011718 eV Core-core repulsion = 26199.806424 eV Total energy + Delta-G solvation = -4142.205294 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.67202 -39.79093 -39.57004 -37.28231 -36.92580 -33.94187 -32.85545 -31.64238 -30.50578 -30.05993 -29.05430 -28.62861 -27.52642 -25.65159 -24.20737 -23.48147 -22.85345 -22.36945 -20.52994 -20.03266 -19.08702 -18.43115 -17.81248 -16.87356 -16.81402 -16.61726 -15.78118 -15.66447 -15.52279 -15.29400 -15.04169 -14.61452 -14.46507 -14.00656 -13.67074 -13.47873 -13.22447 -13.05065 -12.79076 -12.56183 -12.41121 -12.06845 -11.90839 -11.79821 -11.65159 -11.59798 -11.48866 -11.42505 -10.87317 -10.86784 -10.40114 -10.35792 -10.06133 -9.99502 -9.84886 -9.62793 -9.35991 -8.78350 -8.63617 -8.52553 -7.98128 -6.77025 -5.68266 -2.99673 0.71083 1.13814 1.75295 2.49524 2.90108 3.36168 3.42620 3.46425 3.48126 3.50139 3.75768 4.28206 4.52484 4.54003 4.59346 4.78770 4.83596 4.94416 5.03376 5.09034 5.15061 5.19296 5.27913 5.38285 5.43003 5.51354 5.63264 5.73702 5.84013 5.95245 6.01574 6.13378 6.17159 6.21377 6.35874 6.36442 6.40466 6.45832 6.55160 6.63837 6.69484 6.86467 7.14717 7.15779 7.56948 7.57820 7.82389 7.89653 8.29012 8.58126 9.26669 9.86677 10.52533 11.43866 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.011847 B = 0.003144 C = 0.002808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2362.913774 B = 8904.070894 C = 9968.371152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.314 6.314 3 C 0.143 3.857 4 C -0.192 4.192 5 C -0.095 4.095 6 C -0.095 4.095 7 C -0.049 4.049 8 C -0.224 4.224 9 C 0.592 3.408 10 O -0.532 6.532 11 N -0.697 5.697 12 C 0.158 3.842 13 C -0.149 4.149 14 C -0.146 4.146 15 C 0.177 3.823 16 N -0.603 5.603 17 C -0.219 4.219 18 H 0.076 0.924 19 C -0.010 4.010 20 N -0.925 5.925 21 Si 0.909 3.091 22 H -0.289 1.289 23 H -0.291 1.291 24 H -0.282 1.282 25 C 0.130 3.870 26 C 0.071 3.929 27 O -0.174 6.174 28 C 0.018 3.982 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.101 0.899 32 H 0.139 0.861 33 H 0.134 0.866 34 H 0.142 0.858 35 H 0.394 0.606 36 H 0.071 0.929 37 H 0.050 0.950 38 H 0.063 0.937 39 H 0.063 0.937 40 H 0.073 0.927 41 H 0.045 0.955 42 H 0.044 0.956 43 H 0.251 0.749 44 H 0.025 0.975 45 H 0.057 0.943 46 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.485 -3.936 13.701 21.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.228 6.228 3 C 0.098 3.902 4 C -0.211 4.211 5 C -0.113 4.113 6 C -0.113 4.113 7 C -0.051 4.051 8 C -0.228 4.228 9 C 0.379 3.621 10 O -0.410 6.410 11 N -0.347 5.347 12 C 0.072 3.928 13 C -0.207 4.207 14 C -0.185 4.185 15 C 0.052 3.948 16 N -0.329 5.329 17 C -0.348 4.348 18 H 0.094 0.906 19 C -0.206 4.206 20 N -0.574 5.574 21 Si 0.740 3.260 22 H -0.217 1.217 23 H -0.217 1.217 24 H -0.208 1.208 25 C 0.004 3.996 26 C 0.002 3.998 27 O -0.073 6.073 28 C -0.029 4.029 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.119 0.881 32 H 0.157 0.843 33 H 0.152 0.848 34 H 0.160 0.840 35 H 0.228 0.772 36 H 0.090 0.910 37 H 0.069 0.931 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.092 0.908 41 H 0.063 0.937 42 H 0.062 0.938 43 H 0.061 0.939 44 H 0.043 0.957 45 H 0.075 0.925 46 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -16.575 -3.654 13.487 21.679 hybrid contribution -0.049 -0.345 -1.153 1.205 sum -16.625 -4.000 12.334 21.083 Atomic orbital electron populations 1.23090 0.78062 1.04135 1.01487 1.86145 1.21573 1.26162 1.88899 1.17644 0.86513 0.85522 1.00553 1.20931 0.99800 0.91107 1.09248 1.20859 0.94100 0.96998 0.99346 1.20652 0.92715 0.97972 0.99966 1.19209 0.91140 0.92792 1.01947 1.21094 0.93138 0.93564 1.15039 1.16891 0.81493 0.87345 0.76365 1.90725 1.83741 1.16497 1.50083 1.45623 1.04770 1.09784 1.74536 1.21539 0.85911 0.89476 0.95877 1.21986 1.03146 0.99685 0.95901 1.23280 0.94578 0.99616 1.01017 1.21153 0.95022 0.93885 0.84713 1.44435 1.49035 1.38128 1.01286 1.19064 1.20854 1.14562 0.80309 0.90620 1.24747 0.99432 0.98454 0.97934 1.69941 1.31629 1.23288 1.32510 0.86141 0.77725 0.76829 0.85273 1.21660 1.21748 1.20764 1.21896 0.97796 0.92694 0.87265 1.24575 0.87207 0.92389 0.95584 1.83885 1.13428 1.35253 1.74739 1.18610 0.87554 0.86796 1.09927 0.92473 0.92414 0.88097 0.84311 0.84820 0.84043 0.77200 0.90991 0.93110 0.91803 0.91808 0.90798 0.93718 0.93793 0.93916 0.95700 0.92507 0.76494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.81 101.05 0.99 1.17 16 2 O -0.31 -3.65 10.50 -19.58 -0.21 -3.85 16 3 C 0.14 1.81 6.70 -39.12 -0.26 1.55 16 4 C -0.19 -1.99 9.02 -39.41 -0.36 -2.34 16 5 C -0.09 -1.04 10.03 -39.58 -0.40 -1.43 16 6 C -0.09 -1.32 9.88 -39.37 -0.39 -1.71 16 7 C -0.05 -0.76 6.29 -104.99 -0.66 -1.42 16 8 C -0.22 -3.45 6.31 -103.24 -0.65 -4.10 16 9 C 0.59 10.30 7.19 -12.68 -0.09 10.21 16 10 O -0.53 -10.62 13.08 5.24 0.07 -10.55 16 11 N -0.70 -11.28 5.17 -46.65 -0.24 -11.52 16 12 C 0.16 2.77 0.83 -129.51 -0.11 2.66 16 13 C -0.15 -2.24 8.60 37.16 0.32 -1.92 16 14 C -0.15 -2.53 6.00 -24.74 -0.15 -2.68 16 15 C 0.18 4.13 5.37 -3.06 -0.02 4.11 16 16 N -0.60 -15.45 3.39 -170.08 -0.58 -16.02 16 17 C -0.22 -6.25 10.28 -15.06 -0.15 -6.41 16 18 H 0.08 2.15 7.83 -52.48 -0.41 1.73 16 19 C -0.01 -0.29 5.49 -17.43 -0.10 -0.38 16 20 N -0.93 -26.98 10.31 55.49 0.57 -26.41 16 21 Si 0.91 22.59 29.55 -169.99 -5.02 17.57 16 22 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 23 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 24 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 25 C 0.13 2.87 6.10 -2.53 -0.02 2.85 16 26 C 0.07 0.90 11.52 29.96 0.35 1.24 16 27 O -0.17 -2.46 10.53 5.26 0.06 -2.40 16 28 C 0.02 0.26 7.33 -38.45 -0.28 -0.02 16 29 H 0.06 0.29 7.66 -51.93 -0.40 -0.10 16 30 H 0.06 0.32 7.66 -51.93 -0.40 -0.08 16 31 H 0.10 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.14 0.98 6.26 -52.49 -0.33 0.65 16 33 H 0.13 1.06 8.06 -52.48 -0.42 0.64 16 34 H 0.14 2.04 7.53 -52.49 -0.40 1.65 16 35 H 0.39 5.37 7.42 -40.82 -0.30 5.06 16 36 H 0.07 1.19 6.53 -51.93 -0.34 0.85 16 37 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.06 0.89 8.12 -51.93 -0.42 0.47 16 39 H 0.06 0.93 8.05 -51.93 -0.42 0.52 16 40 H 0.07 1.20 8.03 -51.93 -0.42 0.78 16 41 H 0.04 1.13 7.38 -51.93 -0.38 0.75 16 42 H 0.04 1.15 7.50 -51.93 -0.39 0.76 16 43 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 44 H 0.03 0.55 8.04 -51.93 -0.42 0.13 16 45 H 0.06 1.36 6.31 -51.93 -0.33 1.03 16 46 H 0.22 1.82 7.41 -52.49 -0.39 1.43 16 LS Contribution 374.96 15.07 5.65 5.65 Total: -1.00 -35.11 374.96 -7.81 -42.92 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: -6.14 Total: 3.24 kcal Atomic # 6 Polarization: 3.36 SS G_CDS: -1.97 Total: 1.39 kcal Atomic # 7 Polarization: -53.70 SS G_CDS: -0.25 Total: -53.95 kcal Atomic # 8 Polarization: -16.73 SS G_CDS: -0.08 Total: -16.81 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -5.02 Total: 17.57 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -35.11 -7.81 -42.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046318708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.856 kcal (2) G-P(sol) polarization free energy of solvation -35.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds