Wall clock time and date at job start Wed Apr 1 2020 03:07:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35949 * 116.99925 * 2 1 4 4 C 1.38333 * 120.06374 * 359.97438 * 3 2 1 5 5 C 1.38606 * 120.58742 * 180.02562 * 4 3 2 6 6 C 1.37868 * 120.25288 * 359.97438 * 5 4 3 7 7 C 1.39181 * 119.73071 * 0.03143 * 6 5 4 8 8 C 1.47663 * 134.22452 * 179.97438 * 7 6 5 9 9 C 1.47072 * 127.13795 * 359.97438 * 8 7 6 10 10 O 1.21648 * 120.00247 * 0.02562 * 9 8 7 11 11 N 1.34778 * 120.00016 * 179.97438 * 9 8 7 12 12 C 1.46502 * 119.99873 * 180.02562 * 11 9 8 13 13 C 1.53000 * 110.91392 * 62.45132 * 12 11 9 14 14 C 1.55448 * 111.01096 * 186.50321 * 12 11 9 15 15 C 1.54321 * 102.96961 * 82.52411 * 14 12 11 16 16 N 1.47026 * 107.26791 * 22.19024 * 15 14 12 17 17 C 1.36940 * 125.64258 * 181.03445 * 16 15 14 18 18 H 1.08003 * 119.99660 * 180.02562 * 17 16 15 19 19 C 1.38811 * 120.00559 * 0.02875 * 17 16 15 20 20 N 1.31617 * 119.99776 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00230 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.46543 * 89.99925 * 21 19 17 23 23 H 1.48496 * 109.46962 * 209.99740 * 21 19 17 24 24 H 1.48497 * 109.47197 * 330.00191 * 21 19 17 25 25 C 1.47419 * 108.70576 * 1.06162 * 16 15 14 26 26 C 1.36076 * 105.72531 * 180.24249 * 8 7 6 27 27 O 1.33777 * 109.82858 * 359.60246 * 26 8 7 28 28 C 1.34959 * 111.33738 * 0.41958 * 27 26 8 29 29 H 1.08995 * 109.46798 * 299.99851 * 1 2 3 30 30 H 1.09002 * 109.47345 * 59.99973 * 1 2 3 31 31 H 1.08999 * 109.46764 * 179.97438 * 1 2 3 32 32 H 1.07998 * 119.70246 * 0.02562 * 4 3 2 33 33 H 1.08004 * 119.87280 * 179.97438 * 5 4 3 34 34 H 1.07994 * 120.13552 * 180.02562 * 6 5 4 35 35 H 0.97001 * 120.00073 * 0.02562 * 11 9 8 36 36 H 1.09000 * 109.47194 * 297.54709 * 13 12 11 37 37 H 1.09001 * 109.47578 * 57.55154 * 13 12 11 38 38 H 1.09003 * 109.46933 * 177.54882 * 13 12 11 39 39 H 1.08998 * 110.70855 * 324.15215 * 14 12 11 40 40 H 1.08998 * 110.85957 * 200.96831 * 14 12 11 41 41 H 1.08998 * 109.88101 * 262.77542 * 15 14 12 42 42 H 1.08997 * 110.01327 * 141.67909 * 15 14 12 43 43 H 0.97004 * 120.00521 * 179.97438 * 20 19 17 44 44 H 1.09002 * 110.36926 * 94.70918 * 25 16 15 45 45 H 1.08995 * 110.36556 * 216.92202 * 25 16 15 46 46 H 1.08002 * 125.08692 * 179.72314 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2941 2.3723 -0.0005 5 6 1.9120 3.6130 -0.0011 6 6 3.2877 3.7038 -0.0006 7 6 4.0560 2.5433 -0.0001 8 6 5.5069 2.2688 0.0000 9 6 6.5974 3.2556 -0.0009 10 8 6.3415 4.4449 -0.0013 11 7 7.8802 2.8424 -0.0001 12 6 8.9664 3.8255 -0.0004 13 6 8.9273 4.6829 1.2662 14 6 10.3472 3.1304 -0.1638 15 6 10.4534 2.9255 -1.6896 16 7 9.5521 3.8982 -2.3244 17 6 9.3402 4.0292 -3.6710 18 1 8.6551 4.7785 -4.0394 19 6 10.0057 3.1991 -4.5624 20 7 10.8409 2.2862 -4.1135 21 14 9.7160 3.3774 -6.3992 22 1 10.6891 4.3478 -6.9617 23 1 9.8942 2.0589 -7.0587 24 1 8.3345 3.8673 -6.6372 25 6 8.9148 4.7095 -1.2714 26 6 5.6257 0.9132 -0.0051 27 8 4.4117 0.3512 0.0005 28 6 3.4380 1.2858 0.0003 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 0.2158 2.3114 -0.0005 33 1 1.3135 4.5121 -0.0019 34 1 3.7671 4.6715 -0.0006 35 1 8.0843 1.8941 0.0006 36 1 7.9942 5.2456 1.2954 37 1 8.9908 4.0388 2.1432 38 1 9.7692 5.3754 1.2622 39 1 10.3603 2.1723 0.3558 40 1 11.1504 3.7735 0.1958 41 1 10.1476 1.9121 -1.9497 42 1 11.4778 3.0994 -2.0189 43 1 11.3057 1.7058 -4.7364 44 1 9.4725 5.6328 -1.1141 45 1 7.8814 4.9319 -1.5371 46 1 6.5603 0.3719 -0.0107 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046318708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:44 Heat of formation + Delta-G solvation = -30.046383 kcal Electronic energy + Delta-G solvation = -30343.051818 eV Core-core repulsion = 26199.806424 eV Total energy + Delta-G solvation = -4143.245394 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.69210 -41.09944 -40.51976 -38.78189 -37.91697 -35.67057 -34.17907 -33.20350 -31.68282 -31.36200 -30.39854 -29.97527 -28.14566 -27.50762 -25.65395 -24.89861 -23.93782 -23.30020 -22.21332 -21.38204 -20.49395 -19.56649 -18.79554 -18.74756 -17.74740 -17.59887 -17.07863 -16.92608 -16.64007 -16.44229 -16.24231 -15.95915 -15.88671 -15.53606 -15.35407 -14.76651 -14.29524 -14.17905 -14.01442 -13.86726 -13.52985 -13.41110 -13.35153 -13.23719 -13.07226 -12.83989 -12.75193 -12.49488 -12.26514 -12.20849 -12.11448 -12.04577 -11.97895 -11.69945 -11.54443 -10.87392 -10.78138 -10.70365 -10.01133 -9.74632 -8.94800 -8.84671 -7.86040 -5.18915 -0.27092 0.16758 0.68509 1.42690 1.43689 1.52536 1.53776 2.02105 2.22254 2.32908 2.47702 2.66355 3.31934 3.34722 3.44659 3.61727 3.73183 3.82009 3.98898 4.06789 4.11012 4.19263 4.20846 4.28205 4.39574 4.42319 4.48141 4.66581 4.71296 4.75635 4.81959 4.88736 4.90446 4.95798 5.03786 5.05877 5.10749 5.24848 5.37689 5.42428 5.43182 5.51124 5.65381 5.69887 5.71169 5.79095 6.20884 6.32092 6.62426 7.12502 7.28654 7.78160 8.42122 9.23587 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.011847 B = 0.003144 C = 0.002808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2362.913774 B = 8904.070894 C = 9968.371152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.334 6.334 3 C 0.139 3.861 4 C -0.183 4.183 5 C -0.079 4.079 6 C -0.127 4.127 7 C -0.072 4.072 8 C -0.263 4.263 9 C 0.591 3.409 10 O -0.567 6.567 11 N -0.693 5.693 12 C 0.170 3.830 13 C -0.139 4.139 14 C -0.127 4.127 15 C 0.184 3.816 16 N -0.620 5.620 17 C -0.241 4.241 18 H 0.065 0.935 19 C -0.057 4.057 20 N -0.943 5.943 21 Si 0.971 3.029 22 H -0.285 1.285 23 H -0.288 1.288 24 H -0.279 1.279 25 C 0.126 3.874 26 C 0.099 3.901 27 O -0.180 6.180 28 C -0.011 4.011 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.119 0.881 32 H 0.179 0.821 33 H 0.167 0.833 34 H 0.124 0.876 35 H 0.407 0.593 36 H 0.053 0.947 37 H 0.078 0.922 38 H 0.076 0.924 39 H 0.101 0.899 40 H 0.093 0.907 41 H 0.020 0.980 42 H 0.009 0.991 43 H 0.248 0.752 44 H 0.025 0.975 45 H 0.029 0.971 46 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.055 -5.002 14.863 23.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.248 6.248 3 C 0.094 3.906 4 C -0.202 4.202 5 C -0.097 4.097 6 C -0.145 4.145 7 C -0.073 4.073 8 C -0.268 4.268 9 C 0.379 3.621 10 O -0.448 6.448 11 N -0.343 5.343 12 C 0.083 3.917 13 C -0.198 4.198 14 C -0.165 4.165 15 C 0.059 3.941 16 N -0.346 5.346 17 C -0.370 4.370 18 H 0.083 0.917 19 C -0.251 4.251 20 N -0.592 5.592 21 Si 0.800 3.200 22 H -0.212 1.212 23 H -0.215 1.215 24 H -0.204 1.204 25 C 0.000 4.000 26 C 0.030 3.970 27 O -0.079 6.079 28 C -0.058 4.058 29 H 0.093 0.907 30 H 0.089 0.911 31 H 0.137 0.863 32 H 0.196 0.804 33 H 0.184 0.816 34 H 0.142 0.858 35 H 0.244 0.756 36 H 0.072 0.928 37 H 0.097 0.903 38 H 0.095 0.905 39 H 0.120 0.880 40 H 0.111 0.889 41 H 0.038 0.962 42 H 0.027 0.973 43 H 0.057 0.943 44 H 0.042 0.958 45 H 0.048 0.952 46 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges -18.162 -4.735 14.674 23.824 hybrid contribution 0.306 -0.019 -1.539 1.569 sum -17.855 -4.754 13.135 22.670 Atomic orbital electron populations 1.23469 0.75448 1.05993 1.02963 1.86124 1.24301 1.25773 1.88647 1.17920 0.86106 0.86747 0.99865 1.21368 1.01558 0.89859 1.07391 1.21250 0.93001 0.98722 0.96730 1.20720 0.94256 0.96995 1.02546 1.19472 0.91451 0.93733 1.02676 1.21032 0.92896 0.94418 1.18440 1.17176 0.82095 0.87289 0.75503 1.90698 1.84291 1.18054 1.51747 1.45551 1.04221 1.10346 1.74228 1.21403 0.86392 0.89267 0.94673 1.21911 1.02796 0.99739 0.95310 1.23158 0.94806 1.02056 0.96506 1.20969 0.92408 0.92014 0.88684 1.44674 1.49770 1.39021 1.01176 1.19286 1.20836 1.14571 0.82299 0.91709 1.25472 0.99443 0.98391 1.01781 1.70129 1.32060 1.23640 1.33412 0.85195 0.77633 0.76723 0.80492 1.21186 1.21458 1.20402 1.21999 0.95742 0.93442 0.88792 1.25250 0.87938 0.91676 0.92169 1.83883 1.13852 1.35478 1.74686 1.18960 0.88602 0.86505 1.11700 0.90686 0.91089 0.86277 0.80398 0.81586 0.85785 0.75634 0.92767 0.90342 0.90482 0.88039 0.88899 0.96219 0.97288 0.94297 0.95772 0.95220 0.72625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.15 9.81 113.37 1.11 1.26 16 2 O -0.33 -7.18 10.50 -92.97 -0.98 -8.15 16 3 C 0.14 3.36 6.70 22.57 0.15 3.51 16 4 C -0.18 -3.35 9.02 22.38 0.20 -3.15 16 5 C -0.08 -1.62 10.03 22.27 0.22 -1.39 16 6 C -0.13 -3.65 9.88 22.41 0.22 -3.43 16 7 C -0.07 -2.28 6.29 -20.10 -0.13 -2.41 16 8 C -0.26 -8.30 6.31 -18.97 -0.12 -8.42 16 9 C 0.59 21.06 7.19 86.56 0.62 21.68 16 10 O -0.57 -23.76 13.08 -4.18 -0.05 -23.82 16 11 N -0.69 -22.02 5.17 -419.73 -2.17 -24.19 16 12 C 0.17 5.78 0.83 5.10 0.00 5.78 16 13 C -0.14 -3.95 8.60 71.98 0.62 -3.33 16 14 C -0.13 -4.15 6.00 31.88 0.19 -3.96 16 15 C 0.18 8.68 5.37 86.73 0.47 9.14 16 16 N -0.62 -32.68 3.39 -692.01 -2.35 -35.03 16 17 C -0.24 -14.16 10.28 84.03 0.86 -13.29 16 18 H 0.06 3.83 7.83 -2.91 -0.02 3.81 16 19 C -0.06 -3.33 5.49 84.86 0.47 -2.87 16 20 N -0.94 -56.11 10.31 21.65 0.22 -55.89 16 21 Si 0.97 47.22 29.55 68.60 2.03 49.24 16 22 H -0.28 -13.59 7.11 99.48 0.71 -12.88 16 23 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 24 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 25 C 0.13 5.71 6.10 86.85 0.53 6.24 16 26 C 0.10 2.42 11.52 67.32 0.78 3.20 16 27 O -0.18 -5.03 10.53 -4.08 -0.04 -5.07 16 28 C -0.01 -0.34 7.33 23.00 0.17 -0.17 16 29 H 0.07 0.50 7.66 -2.39 -0.02 0.48 16 30 H 0.07 0.54 7.66 -2.39 -0.02 0.52 16 31 H 0.12 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.18 1.75 6.26 -2.91 -0.02 1.73 16 33 H 0.17 2.20 8.06 -2.91 -0.02 2.18 16 34 H 0.12 3.89 7.53 -2.91 -0.02 3.86 16 35 H 0.41 10.47 7.42 -92.71 -0.69 9.78 16 36 H 0.05 1.77 6.53 -2.39 -0.02 1.75 16 37 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 38 H 0.08 1.98 8.12 -2.39 -0.02 1.96 16 39 H 0.10 2.60 8.05 -2.39 -0.02 2.59 16 40 H 0.09 2.75 8.03 -2.39 -0.02 2.73 16 41 H 0.02 1.01 7.38 -2.39 -0.02 0.99 16 42 H 0.01 0.48 7.50 -2.39 -0.02 0.46 16 43 H 0.25 14.31 8.31 -92.70 -0.77 13.54 16 44 H 0.02 1.10 8.04 -2.39 -0.02 1.08 16 45 H 0.03 1.49 6.31 -2.39 -0.02 1.48 16 46 H 0.26 3.74 7.41 -2.91 -0.02 3.72 16 Total: -1.00 -81.24 374.96 3.37 -77.87 By element: Atomic # 1 Polarization: 16.30 SS G_CDS: 0.34 Total: 16.63 kcal Atomic # 6 Polarization: 2.03 SS G_CDS: 6.37 Total: 8.40 kcal Atomic # 7 Polarization: -110.82 SS G_CDS: -4.29 Total: -115.11 kcal Atomic # 8 Polarization: -35.97 SS G_CDS: -1.07 Total: -37.04 kcal Atomic # 14 Polarization: 47.22 SS G_CDS: 2.03 Total: 49.24 kcal Total: -81.24 3.37 -77.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046318708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.828 kcal (2) G-P(sol) polarization free energy of solvation -81.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds