Wall clock time and date at job start Wed Apr 1 2020 03:07:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35568 * 117.00192 * 2 1 4 4 C 1.46688 * 127.03665 * 270.00329 * 3 2 1 5 5 C 1.39568 * 134.09312 * 0.04234 * 4 3 2 6 6 C 1.36675 * 119.73175 * 179.97438 * 5 4 3 7 7 C 1.38796 * 120.41737 * 359.97438 * 6 5 4 8 8 C 1.37807 * 120.71201 * 0.02562 * 7 6 5 9 9 C 1.39044 * 119.86577 * 359.97438 * 8 7 6 10 10 O 1.34766 * 133.06543 * 180.31826 * 9 8 7 11 11 C 1.35220 * 110.96352 * 180.09470 * 10 9 8 12 12 C 1.46193 * 125.22674 * 179.87915 * 11 10 9 13 13 O 1.21763 * 119.99556 * 179.69301 * 12 11 10 14 14 N 1.34777 * 120.00324 * 359.41863 * 12 11 10 15 15 C 1.46495 * 119.99663 * 180.27910 * 14 12 11 16 16 C 1.52997 * 110.89269 * 62.42621 * 15 14 12 17 17 C 1.55159 * 111.00282 * 186.34939 * 15 14 12 18 18 C 1.54323 * 102.94354 * 82.56873 * 17 15 14 19 19 N 1.47013 * 107.27291 * 22.19631 * 18 17 15 20 20 C 1.36937 * 125.65102 * 181.02352 * 19 18 17 21 21 H 1.07997 * 120.00120 * 180.02562 * 20 19 18 22 22 C 1.38812 * 119.99893 * 0.04085 * 20 19 18 23 23 N 1.31622 * 119.99771 * 0.02562 * 22 20 19 24 24 Si 1.86793 * 119.99984 * 179.97438 * 22 20 19 25 25 H 1.48508 * 109.47011 * 90.00122 * 24 22 20 26 26 H 1.48499 * 109.47259 * 209.99643 * 24 22 20 27 27 H 1.48498 * 109.47429 * 330.00399 * 24 22 20 28 28 C 1.47428 * 108.70232 * 1.05858 * 19 18 17 29 29 H 1.09001 * 109.47144 * 300.00048 * 1 2 3 30 30 H 1.09000 * 109.47270 * 59.99334 * 1 2 3 31 31 H 1.08995 * 109.47236 * 179.97438 * 1 2 3 32 32 H 1.08001 * 120.13514 * 359.95142 * 5 4 3 33 33 H 1.08000 * 119.79071 * 180.02562 * 6 5 4 34 34 H 1.07999 * 119.64027 * 180.02562 * 7 6 5 35 35 H 1.08000 * 120.06158 * 180.02562 * 8 7 6 36 36 H 0.97000 * 119.99736 * 0.27180 * 14 12 11 37 37 H 1.09004 * 109.47145 * 60.69400 * 16 15 14 38 38 H 1.09000 * 109.47466 * 180.69747 * 16 15 14 39 39 H 1.09002 * 109.46816 * 300.70098 * 16 15 14 40 40 H 1.09000 * 110.72367 * 200.94032 * 17 15 14 41 41 H 1.09008 * 110.71710 * 324.20734 * 17 15 14 42 42 H 1.08999 * 109.88279 * 262.77688 * 18 17 15 43 43 H 1.09002 * 109.88129 * 141.61501 * 18 17 15 44 44 H 0.96999 * 119.99330 * 179.97438 * 23 22 20 45 45 H 1.09005 * 110.36764 * 217.03766 * 28 19 18 46 46 H 1.08998 * 110.46550 * 94.75903 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0445 1.2079 0.0000 4 6 2.4455 1.9952 -1.1709 5 6 2.3471 1.8038 -2.5499 6 6 2.8318 2.7556 -3.4026 7 6 3.4201 3.9103 -2.9057 8 6 3.5266 4.1175 -1.5474 9 6 3.0404 3.1627 -0.6612 10 8 2.9992 3.0922 0.6840 11 6 2.4181 1.9409 1.0905 12 6 2.2155 1.5445 2.4830 13 8 1.6745 0.4847 2.7416 14 7 2.6324 2.3494 3.4804 15 6 2.4348 1.9491 4.8757 16 6 3.2012 0.6623 5.1880 17 6 2.8435 3.0899 5.8447 18 6 1.5910 3.9913 5.8652 19 7 0.4498 3.1624 5.4506 20 6 -0.8435 3.5930 5.3196 21 1 -1.6134 2.9028 5.0078 22 6 -1.1648 4.9166 5.5872 23 7 -0.2262 5.7579 5.9664 24 14 -2.9288 5.5042 5.4078 25 1 -3.6424 5.3296 6.6985 26 1 -2.9363 6.9399 5.0285 27 1 -3.6104 4.7101 4.3542 28 6 0.9282 1.7907 5.1999 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8901 0.9070 -2.9416 33 1 2.7557 2.6087 -4.4699 34 1 3.7985 4.6544 -3.5909 35 1 3.9859 5.0200 -1.1722 36 1 3.0634 3.1935 3.2743 37 1 4.2670 0.8265 5.0286 38 1 3.0284 0.3793 6.2263 39 1 2.8544 -0.1356 4.5313 40 1 3.0511 2.6953 6.8393 41 1 3.7045 3.6348 5.4574 42 1 1.7194 4.8203 5.1692 43 1 1.4254 4.3728 6.8728 44 1 -0.4508 6.6829 6.1530 45 1 0.4015 1.3543 4.3511 46 1 0.7942 1.1722 6.0873 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046537608.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:33 Heat of formation + Delta-G solvation = -3.710637 kcal Electronic energy + Delta-G solvation = -30912.617037 eV Core-core repulsion = 26770.513647 eV Total energy + Delta-G solvation = -4142.103390 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.62247 -39.81309 -38.35345 -38.09193 -37.14449 -33.99140 -32.25722 -32.02375 -30.62402 -30.23784 -29.35877 -28.65544 -27.04043 -25.68992 -24.55554 -23.52186 -22.91849 -21.64835 -20.81657 -20.17751 -19.17959 -18.25459 -18.10107 -17.02622 -16.69003 -16.53419 -15.72053 -15.41197 -15.18144 -14.99560 -14.74864 -14.63633 -14.50000 -14.20223 -13.94517 -13.70946 -13.35717 -13.11306 -12.77390 -12.51558 -12.29477 -12.06810 -11.95837 -11.85312 -11.80547 -11.66967 -11.34094 -10.90762 -10.88992 -10.53185 -10.38998 -10.12404 -10.07268 -10.05598 -10.00208 -9.65930 -9.53974 -8.90392 -8.71974 -8.57278 -8.28267 -6.79554 -5.70082 -3.01986 0.37861 1.09505 1.59038 2.35013 3.18702 3.32869 3.39979 3.40646 3.45779 3.47398 3.66181 4.30051 4.51265 4.56435 4.67756 4.84838 4.99511 5.02394 5.08569 5.23005 5.29280 5.36571 5.42009 5.42555 5.47636 5.60850 5.69273 5.72387 5.77987 5.94042 5.98818 6.03782 6.10830 6.14293 6.16743 6.29665 6.32761 6.38813 6.51084 6.65326 6.75553 6.84707 7.05812 7.32758 7.54984 7.57462 7.76448 7.82277 8.26816 8.35751 9.24212 9.84267 10.50193 11.41978 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.010561 B = 0.003630 C = 0.003302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2650.717932 B = 7712.515604 C = 8478.780790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.292 6.292 3 C 0.087 3.913 4 C -0.156 4.156 5 C -0.055 4.055 6 C -0.141 4.141 7 C -0.084 4.084 8 C -0.109 4.109 9 C 0.079 3.921 10 O -0.172 6.172 11 C -0.030 4.030 12 C 0.598 3.402 13 O -0.504 6.504 14 N -0.685 5.685 15 C 0.154 3.846 16 C -0.150 4.150 17 C -0.146 4.146 18 C 0.177 3.823 19 N -0.603 5.603 20 C -0.222 4.222 21 H 0.076 0.924 22 C -0.009 4.009 23 N -0.923 5.923 24 Si 0.910 3.090 25 H -0.289 1.289 26 H -0.291 1.291 27 H -0.282 1.282 28 C 0.132 3.868 29 H 0.057 0.943 30 H 0.044 0.956 31 H 0.099 0.901 32 H 0.130 0.870 33 H 0.131 0.869 34 H 0.137 0.863 35 H 0.138 0.862 36 H 0.404 0.596 37 H 0.051 0.949 38 H 0.066 0.934 39 H 0.072 0.928 40 H 0.075 0.925 41 H 0.065 0.935 42 H 0.046 0.954 43 H 0.045 0.955 44 H 0.251 0.749 45 H 0.055 0.945 46 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.933 -6.300 -15.799 19.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.207 6.207 3 C 0.039 3.961 4 C -0.157 4.157 5 C -0.073 4.073 6 C -0.159 4.159 7 C -0.102 4.102 8 C -0.128 4.128 9 C 0.030 3.970 10 O -0.073 6.073 11 C -0.081 4.081 12 C 0.383 3.617 13 O -0.381 6.381 14 N -0.335 5.335 15 C 0.068 3.932 16 C -0.209 4.209 17 C -0.185 4.185 18 C 0.052 3.948 19 N -0.329 5.329 20 C -0.351 4.351 21 H 0.094 0.906 22 C -0.205 4.205 23 N -0.572 5.572 24 Si 0.741 3.259 25 H -0.216 1.216 26 H -0.217 1.217 27 H -0.208 1.208 28 C 0.005 3.995 29 H 0.076 0.924 30 H 0.062 0.938 31 H 0.117 0.883 32 H 0.147 0.853 33 H 0.149 0.851 34 H 0.155 0.845 35 H 0.156 0.844 36 H 0.238 0.762 37 H 0.070 0.930 38 H 0.085 0.915 39 H 0.091 0.909 40 H 0.094 0.906 41 H 0.084 0.916 42 H 0.064 0.936 43 H 0.063 0.937 44 H 0.061 0.939 45 H 0.073 0.927 46 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 9.585 -6.827 -15.351 19.343 hybrid contribution -0.952 1.023 -0.243 1.418 sum 8.633 -5.805 -15.594 18.745 Atomic orbital electron populations 1.23073 0.77840 1.03642 1.01083 1.85924 1.20479 1.21030 1.93264 1.19359 0.99773 0.87881 0.89093 1.20011 1.05452 0.95693 0.94551 1.20326 0.97587 0.99240 0.90120 1.20802 1.00655 0.94419 1.00028 1.21008 0.97848 0.97575 0.93730 1.20043 1.03170 0.98405 0.91134 1.19549 1.00002 0.96185 0.81233 1.84181 1.66644 1.35825 1.20684 1.22489 1.04023 0.86298 0.95275 1.16333 0.79575 0.84499 0.81300 1.90880 1.42729 1.22665 1.81832 1.45730 1.59565 1.22531 1.05639 1.21598 0.97689 0.94689 0.79226 1.22001 0.99164 0.97456 1.02238 1.23240 1.00381 0.96764 0.98073 1.21163 0.82514 0.91218 0.99891 1.44440 1.04840 1.04068 1.79577 1.19050 0.83440 0.93774 1.38818 0.90613 1.24757 0.97703 0.96114 1.01885 1.69948 1.30634 1.04004 1.52567 0.86144 0.84229 0.77838 0.77737 1.21598 1.21723 1.20807 1.21892 0.90618 0.88741 0.98281 0.92441 0.93769 0.88306 0.85250 0.85084 0.84483 0.84422 0.76158 0.92957 0.91534 0.90949 0.90621 0.91642 0.93603 0.93726 0.93864 0.92706 0.95428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.49 11.13 101.05 1.12 1.62 16 2 O -0.29 -4.62 9.75 -30.36 -0.30 -4.92 16 3 C 0.09 1.40 6.52 -36.76 -0.24 1.16 16 4 C -0.16 -2.16 6.38 -105.10 -0.67 -2.83 16 5 C -0.05 -0.59 10.05 -39.65 -0.40 -0.99 16 6 C -0.14 -1.21 9.98 -39.94 -0.40 -1.61 16 7 C -0.08 -0.70 10.01 -39.53 -0.40 -1.09 16 8 C -0.11 -1.15 10.07 -39.44 -0.40 -1.54 16 9 C 0.08 1.09 7.39 -38.39 -0.28 0.80 16 10 O -0.17 -2.69 10.28 1.84 0.02 -2.67 16 11 C -0.03 -0.51 7.07 -36.98 -0.26 -0.77 16 12 C 0.60 10.99 7.16 -13.07 -0.09 10.89 16 13 O -0.50 -10.10 12.96 -6.82 -0.09 -10.19 16 14 N -0.69 -12.02 5.17 -47.06 -0.24 -12.26 16 15 C 0.15 2.77 0.82 -129.67 -0.11 2.67 16 16 C -0.15 -2.30 8.62 37.16 0.32 -1.98 16 17 C -0.15 -2.60 5.99 -24.90 -0.15 -2.75 16 18 C 0.18 4.20 5.36 -3.07 -0.02 4.18 16 19 N -0.60 -15.53 3.39 -170.08 -0.58 -16.10 16 20 C -0.22 -6.32 10.28 -15.06 -0.15 -6.48 16 21 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 22 C -0.01 -0.25 5.49 -17.43 -0.10 -0.34 16 23 N -0.92 -27.04 10.31 55.49 0.57 -26.47 16 24 Si 0.91 22.46 29.55 -169.99 -5.02 17.44 16 25 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 26 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 27 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 28 C 0.13 2.89 6.11 -2.53 -0.02 2.87 16 29 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 33 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 34 H 0.14 0.71 8.06 -52.49 -0.42 0.29 16 35 H 0.14 1.16 8.06 -52.49 -0.42 0.74 16 36 H 0.40 6.56 8.19 -40.82 -0.33 6.23 16 37 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.07 0.94 8.13 -51.93 -0.42 0.52 16 39 H 0.07 1.20 6.45 -51.93 -0.33 0.87 16 40 H 0.08 1.24 8.04 -51.93 -0.42 0.83 16 41 H 0.06 1.02 8.05 -51.92 -0.42 0.60 16 42 H 0.05 1.20 7.38 -51.93 -0.38 0.81 16 43 H 0.04 1.17 7.51 -51.93 -0.39 0.78 16 44 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 45 H 0.05 1.29 6.31 -51.93 -0.33 0.96 16 46 H 0.03 0.60 8.03 -51.93 -0.42 0.19 16 LS Contribution 380.19 15.07 5.73 5.73 Total: -1.00 -33.24 380.19 -8.51 -41.75 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: -6.37 Total: 3.89 kcal Atomic # 6 Polarization: 6.04 SS G_CDS: -2.23 Total: 3.80 kcal Atomic # 7 Polarization: -54.59 SS G_CDS: -0.25 Total: -54.84 kcal Atomic # 8 Polarization: -17.41 SS G_CDS: -0.37 Total: -17.78 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.44 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -33.24 -8.51 -41.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046537608.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.039 kcal (2) G-P(sol) polarization free energy of solvation -33.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds