Wall clock time and date at job start Wed Apr 1 2020 03:07:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35568 * 117.00192 * 2 1 4 4 C 1.46688 * 127.03665 * 270.00329 * 3 2 1 5 5 C 1.39568 * 134.09312 * 0.04234 * 4 3 2 6 6 C 1.36675 * 119.73175 * 179.97438 * 5 4 3 7 7 C 1.38796 * 120.41737 * 359.97438 * 6 5 4 8 8 C 1.37807 * 120.71201 * 0.02562 * 7 6 5 9 9 C 1.39044 * 119.86577 * 359.97438 * 8 7 6 10 10 O 1.34766 * 133.06543 * 180.31826 * 9 8 7 11 11 C 1.35220 * 110.96352 * 180.09470 * 10 9 8 12 12 C 1.46193 * 125.22674 * 179.87915 * 11 10 9 13 13 O 1.21763 * 119.99556 * 179.69301 * 12 11 10 14 14 N 1.34777 * 120.00324 * 359.41863 * 12 11 10 15 15 C 1.46495 * 119.99663 * 180.27910 * 14 12 11 16 16 C 1.52997 * 110.89269 * 62.42621 * 15 14 12 17 17 C 1.55159 * 111.00282 * 186.34939 * 15 14 12 18 18 C 1.54323 * 102.94354 * 82.56873 * 17 15 14 19 19 N 1.47013 * 107.27291 * 22.19631 * 18 17 15 20 20 C 1.36937 * 125.65102 * 181.02352 * 19 18 17 21 21 H 1.07997 * 120.00120 * 180.02562 * 20 19 18 22 22 C 1.38812 * 119.99893 * 0.04085 * 20 19 18 23 23 N 1.31622 * 119.99771 * 0.02562 * 22 20 19 24 24 Si 1.86793 * 119.99984 * 179.97438 * 22 20 19 25 25 H 1.48508 * 109.47011 * 90.00122 * 24 22 20 26 26 H 1.48499 * 109.47259 * 209.99643 * 24 22 20 27 27 H 1.48498 * 109.47429 * 330.00399 * 24 22 20 28 28 C 1.47428 * 108.70232 * 1.05858 * 19 18 17 29 29 H 1.09001 * 109.47144 * 300.00048 * 1 2 3 30 30 H 1.09000 * 109.47270 * 59.99334 * 1 2 3 31 31 H 1.08995 * 109.47236 * 179.97438 * 1 2 3 32 32 H 1.08001 * 120.13514 * 359.95142 * 5 4 3 33 33 H 1.08000 * 119.79071 * 180.02562 * 6 5 4 34 34 H 1.07999 * 119.64027 * 180.02562 * 7 6 5 35 35 H 1.08000 * 120.06158 * 180.02562 * 8 7 6 36 36 H 0.97000 * 119.99736 * 0.27180 * 14 12 11 37 37 H 1.09004 * 109.47145 * 60.69400 * 16 15 14 38 38 H 1.09000 * 109.47466 * 180.69747 * 16 15 14 39 39 H 1.09002 * 109.46816 * 300.70098 * 16 15 14 40 40 H 1.09000 * 110.72367 * 200.94032 * 17 15 14 41 41 H 1.09008 * 110.71710 * 324.20734 * 17 15 14 42 42 H 1.08999 * 109.88279 * 262.77688 * 18 17 15 43 43 H 1.09002 * 109.88129 * 141.61501 * 18 17 15 44 44 H 0.96999 * 119.99330 * 179.97438 * 23 22 20 45 45 H 1.09005 * 110.36764 * 217.03766 * 28 19 18 46 46 H 1.08998 * 110.46550 * 94.75903 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0445 1.2079 0.0000 4 6 2.4455 1.9952 -1.1709 5 6 2.3471 1.8038 -2.5499 6 6 2.8318 2.7556 -3.4026 7 6 3.4201 3.9103 -2.9057 8 6 3.5266 4.1175 -1.5474 9 6 3.0404 3.1627 -0.6612 10 8 2.9992 3.0922 0.6840 11 6 2.4181 1.9409 1.0905 12 6 2.2155 1.5445 2.4830 13 8 1.6745 0.4847 2.7416 14 7 2.6324 2.3494 3.4804 15 6 2.4348 1.9491 4.8757 16 6 3.2012 0.6623 5.1880 17 6 2.8435 3.0899 5.8447 18 6 1.5910 3.9913 5.8652 19 7 0.4498 3.1624 5.4506 20 6 -0.8435 3.5930 5.3196 21 1 -1.6134 2.9028 5.0078 22 6 -1.1648 4.9166 5.5872 23 7 -0.2262 5.7579 5.9664 24 14 -2.9288 5.5042 5.4078 25 1 -3.6424 5.3296 6.6985 26 1 -2.9363 6.9399 5.0285 27 1 -3.6104 4.7101 4.3542 28 6 0.9282 1.7907 5.1999 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8901 0.9070 -2.9416 33 1 2.7557 2.6087 -4.4699 34 1 3.7985 4.6544 -3.5909 35 1 3.9859 5.0200 -1.1722 36 1 3.0634 3.1935 3.2743 37 1 4.2670 0.8265 5.0286 38 1 3.0284 0.3793 6.2263 39 1 2.8544 -0.1356 4.5313 40 1 3.0511 2.6953 6.8393 41 1 3.7045 3.6348 5.4574 42 1 1.7194 4.8203 5.1692 43 1 1.4254 4.3728 6.8728 44 1 -0.4508 6.6829 6.1530 45 1 0.4015 1.3543 4.3511 46 1 0.7942 1.1722 6.0873 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046537608.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:32 Heat of formation + Delta-G solvation = -25.134756 kcal Electronic energy + Delta-G solvation = -30913.546057 eV Core-core repulsion = 26770.513647 eV Total energy + Delta-G solvation = -4143.032410 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.67032 -41.25735 -39.56089 -39.04859 -38.62850 -35.76246 -33.79372 -33.22626 -31.98742 -31.39374 -30.64767 -30.18768 -28.14155 -27.55157 -25.83635 -25.10608 -23.83827 -22.76597 -22.26095 -21.78747 -20.63926 -19.55090 -19.11455 -18.79848 -17.82612 -17.74648 -17.16952 -16.73205 -16.54516 -16.20597 -16.08101 -15.98241 -15.80457 -15.56710 -15.35354 -14.97373 -14.81932 -14.31139 -14.02943 -13.89841 -13.59415 -13.47544 -13.31831 -13.15153 -13.03429 -12.86889 -12.85396 -12.79332 -12.20578 -12.14718 -12.08534 -12.04690 -11.74958 -11.65997 -11.25568 -11.05793 -10.96256 -10.73326 -10.17857 -9.76402 -9.30307 -8.89140 -7.88100 -5.22028 -0.66526 0.25138 0.59698 1.25914 1.40949 1.42696 1.51156 1.88417 2.03358 2.44643 2.45792 2.67267 3.22327 3.30459 3.51861 3.64788 3.68515 3.76623 3.97001 3.99936 4.14146 4.19397 4.21509 4.29685 4.36001 4.43810 4.51022 4.60219 4.64929 4.67035 4.71327 4.83674 4.89943 4.92063 5.00004 5.03396 5.11799 5.28762 5.31765 5.39569 5.41358 5.44243 5.54566 5.64211 5.73501 5.91185 6.17367 6.18736 6.39665 6.97030 7.09083 7.74670 8.39048 9.21848 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.010561 B = 0.003630 C = 0.003302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2650.717932 B = 7712.515604 C = 8478.780790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.308 6.308 3 C 0.088 3.912 4 C -0.180 4.180 5 C -0.064 4.064 6 C -0.129 4.129 7 C -0.065 4.065 8 C -0.122 4.122 9 C 0.055 3.945 10 O -0.183 6.183 11 C -0.066 4.066 12 C 0.596 3.404 13 O -0.530 6.530 14 N -0.685 5.685 15 C 0.163 3.837 16 C -0.140 4.140 17 C -0.128 4.128 18 C 0.185 3.815 19 N -0.621 5.621 20 C -0.243 4.243 21 H 0.069 0.931 22 C -0.059 4.059 23 N -0.945 5.945 24 Si 0.973 3.027 25 H -0.283 1.283 26 H -0.290 1.290 27 H -0.276 1.276 28 C 0.129 3.871 29 H 0.028 0.972 30 H 0.063 0.937 31 H 0.124 0.876 32 H 0.144 0.856 33 H 0.170 0.830 34 H 0.180 0.820 35 H 0.155 0.845 36 H 0.408 0.592 37 H 0.076 0.924 38 H 0.082 0.918 39 H 0.056 0.944 40 H 0.099 0.901 41 H 0.095 0.905 42 H 0.014 0.986 43 H 0.012 0.988 44 H 0.248 0.752 45 H 0.032 0.968 46 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.100 -6.110 -18.438 22.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.224 6.224 3 C 0.039 3.961 4 C -0.181 4.181 5 C -0.082 4.082 6 C -0.147 4.147 7 C -0.082 4.082 8 C -0.140 4.140 9 C 0.008 3.992 10 O -0.086 6.086 11 C -0.116 4.116 12 C 0.382 3.618 13 O -0.410 6.410 14 N -0.335 5.335 15 C 0.077 3.923 16 C -0.198 4.198 17 C -0.166 4.166 18 C 0.060 3.940 19 N -0.348 5.348 20 C -0.373 4.373 21 H 0.087 0.913 22 C -0.252 4.252 23 N -0.594 5.594 24 Si 0.802 3.198 25 H -0.210 1.210 26 H -0.216 1.216 27 H -0.201 1.201 28 C 0.003 3.997 29 H 0.047 0.953 30 H 0.082 0.918 31 H 0.142 0.858 32 H 0.162 0.838 33 H 0.188 0.812 34 H 0.197 0.803 35 H 0.173 0.827 36 H 0.244 0.756 37 H 0.095 0.905 38 H 0.101 0.899 39 H 0.076 0.924 40 H 0.117 0.883 41 H 0.114 0.886 42 H 0.032 0.968 43 H 0.030 0.970 44 H 0.057 0.943 45 H 0.050 0.950 46 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 10.769 -6.653 -17.997 22.003 hybrid contribution -1.330 0.979 0.376 1.693 sum 9.440 -5.674 -17.621 20.780 Atomic orbital electron populations 1.23196 0.76566 1.05194 1.00565 1.85862 1.21696 1.21378 1.93436 1.19739 0.98715 0.87529 0.90078 1.20173 1.06932 0.95604 0.95401 1.20660 0.97937 1.00664 0.88932 1.21313 0.98399 0.93294 1.01649 1.21592 0.95444 0.97984 0.93191 1.20496 1.03330 0.98456 0.91730 1.20164 1.01010 0.97426 0.80647 1.84112 1.67082 1.35319 1.22084 1.22182 1.06859 0.87809 0.94796 1.16534 0.78957 0.84193 0.82085 1.90843 1.43863 1.23707 1.82565 1.45727 1.59560 1.22724 1.05457 1.21533 0.95027 0.96189 0.79574 1.21931 1.00021 0.95064 1.02819 1.23123 0.98274 0.95629 0.99558 1.20942 0.84587 0.91564 0.96891 1.44688 1.04651 1.05822 1.79599 1.19326 0.84877 0.94161 1.38891 0.91298 1.25530 1.01587 0.96162 1.01915 1.70152 1.32221 1.03869 1.53148 0.85161 0.79757 0.77088 0.77828 1.20988 1.21584 1.20145 1.21996 0.93379 0.86901 0.97444 0.95347 0.91789 0.85774 0.83807 0.81208 0.80312 0.82706 0.75576 0.90463 0.89892 0.92449 0.88285 0.88642 0.96758 0.96975 0.94305 0.95012 0.94964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.02 11.13 113.37 1.26 2.29 16 2 O -0.31 -10.07 9.75 -77.32 -0.75 -10.82 16 3 C 0.09 2.93 6.52 24.10 0.16 3.09 16 4 C -0.18 -4.96 6.38 -20.17 -0.13 -5.08 16 5 C -0.06 -1.24 10.05 22.22 0.22 -1.02 16 6 C -0.13 -1.66 9.98 22.04 0.22 -1.44 16 7 C -0.06 -0.80 10.01 22.30 0.22 -0.58 16 8 C -0.12 -2.30 10.07 22.36 0.23 -2.07 16 9 C 0.06 1.52 7.39 23.04 0.17 1.69 16 10 O -0.18 -6.00 10.28 -16.35 -0.17 -6.16 16 11 C -0.07 -2.36 7.07 23.96 0.17 -2.19 16 12 C 0.60 23.02 7.16 86.31 0.62 23.64 16 13 O -0.53 -22.45 12.96 6.88 0.09 -22.36 16 14 N -0.69 -24.71 5.17 -420.98 -2.18 -26.89 16 15 C 0.16 5.86 0.82 5.00 0.00 5.87 16 16 C -0.14 -4.11 8.62 71.98 0.62 -3.49 16 17 C -0.13 -4.44 5.99 31.78 0.19 -4.25 16 18 C 0.18 9.06 5.36 86.73 0.47 9.52 16 19 N -0.62 -33.24 3.39 -692.00 -2.35 -35.59 16 20 C -0.24 -14.37 10.28 84.03 0.86 -13.51 16 21 H 0.07 4.03 7.83 -2.91 -0.02 4.01 16 22 C -0.06 -3.42 5.49 84.86 0.47 -2.96 16 23 N -0.95 -57.12 10.31 21.65 0.22 -56.90 16 24 Si 0.97 47.19 29.55 68.60 2.03 49.22 16 25 H -0.28 -13.41 7.11 99.48 0.71 -12.70 16 26 H -0.29 -13.89 7.11 99.48 0.71 -13.19 16 27 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 28 C 0.13 5.84 6.11 86.86 0.53 6.38 16 29 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.12 2.59 8.14 -2.39 -0.02 2.57 16 32 H 0.14 2.27 8.06 -2.91 -0.02 2.25 16 33 H 0.17 0.92 8.06 -2.91 -0.02 0.89 16 34 H 0.18 0.77 8.06 -2.91 -0.02 0.75 16 35 H 0.16 2.28 8.06 -2.91 -0.02 2.26 16 36 H 0.41 13.68 8.19 -92.71 -0.76 12.92 16 37 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 38 H 0.08 2.16 8.13 -2.39 -0.02 2.14 16 39 H 0.06 1.89 6.45 -2.39 -0.02 1.88 16 40 H 0.10 3.03 8.04 -2.39 -0.02 3.02 16 41 H 0.10 2.78 8.05 -2.38 -0.02 2.76 16 42 H 0.01 0.77 7.38 -2.39 -0.02 0.76 16 43 H 0.01 0.66 7.51 -2.39 -0.02 0.64 16 44 H 0.25 14.52 8.31 -92.71 -0.77 13.75 16 45 H 0.03 1.58 6.31 -2.38 -0.02 1.56 16 46 H 0.03 1.43 8.03 -2.39 -0.02 1.42 16 Total: -1.00 -77.46 380.19 3.42 -74.03 By element: Atomic # 1 Polarization: 19.33 SS G_CDS: 0.25 Total: 19.59 kcal Atomic # 6 Polarization: 9.60 SS G_CDS: 6.28 Total: 15.88 kcal Atomic # 7 Polarization: -115.08 SS G_CDS: -4.30 Total: -119.38 kcal Atomic # 8 Polarization: -38.51 SS G_CDS: -0.83 Total: -39.34 kcal Atomic # 14 Polarization: 47.19 SS G_CDS: 2.03 Total: 49.22 kcal Total: -77.46 3.42 -74.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046537608.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.899 kcal (2) G-P(sol) polarization free energy of solvation -77.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds