Wall clock time and date at job start Wed Apr 1 2020 03:15:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.35831 * 126.46366 * 2 1 4 4 H 0.97000 * 124.91473 * 359.97438 * 3 2 1 5 5 N 1.28455 * 110.17168 * 180.28316 * 3 2 1 6 6 C 1.31939 * 110.20672 * 359.73555 * 5 3 2 7 7 C 1.47522 * 126.45810 * 180.02562 * 6 5 3 8 8 O 1.21594 * 119.99802 * 179.97438 * 7 6 5 9 9 N 1.34779 * 120.00125 * 359.97438 * 7 6 5 10 10 C 1.46503 * 119.99895 * 180.02562 * 9 7 6 11 11 C 1.53000 * 109.46890 * 179.97438 * 10 9 7 12 12 H 1.09002 * 109.49725 * 55.06524 * 11 10 9 13 13 C 1.53192 * 109.49904 * 294.99850 * 11 10 9 14 14 N 1.46923 * 108.77906 * 185.41389 * 13 11 10 15 15 C 1.36932 * 120.63598 * 233.58929 * 14 13 11 16 16 H 1.08002 * 119.99911 * 27.68175 * 15 14 13 17 17 C 1.38809 * 120.00525 * 207.68547 * 15 14 13 18 18 N 1.31624 * 119.99717 * 17.36321 * 17 15 14 19 19 Si 1.86799 * 120.00425 * 197.36503 * 17 15 14 20 20 H 1.48498 * 109.46964 * 59.99552 * 19 17 15 21 21 H 1.48494 * 109.47113 * 179.97438 * 19 17 15 22 22 H 1.48505 * 109.46827 * 300.00025 * 19 17 15 23 23 C 1.46927 * 118.73635 * 53.60960 * 14 13 11 24 24 C 1.53191 * 108.77711 * 306.39533 * 23 14 13 25 25 C 1.53037 * 109.49513 * 175.16353 * 11 10 9 26 26 F 1.39897 * 109.46232 * 301.33807 * 25 11 10 27 27 F 1.39902 * 109.46518 * 61.29516 * 25 11 10 28 28 C 1.35783 * 126.45586 * 179.82646 * 2 1 3 29 29 O 1.36088 * 127.26904 * 359.97438 * 28 2 1 30 30 H 1.09006 * 109.46953 * 270.17832 * 1 2 3 31 31 H 1.09003 * 109.46706 * 30.17512 * 1 2 3 32 32 H 1.08998 * 109.47329 * 150.17718 * 1 2 3 33 33 H 0.96996 * 119.99973 * 359.97438 * 9 7 6 34 34 H 1.08999 * 109.47197 * 299.99715 * 10 9 7 35 35 H 1.09003 * 109.47246 * 59.99895 * 10 9 7 36 36 H 1.08998 * 109.58750 * 305.20735 * 13 11 10 37 37 H 1.08999 * 109.58546 * 65.62651 * 13 11 10 38 38 H 0.96996 * 120.00351 * 179.97438 * 18 17 15 39 39 H 1.09004 * 109.58557 * 66.17959 * 23 14 13 40 40 H 1.09002 * 109.58803 * 186.60398 * 23 14 13 41 41 H 1.08992 * 109.50007 * 174.58862 * 24 23 14 42 42 H 1.09004 * 109.49363 * 294.68532 * 24 23 14 43 43 H 0.96700 * 114.00073 * 269.70672 * 29 28 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3143 1.0924 0.0000 4 1 2.0046 2.0116 -0.0004 5 7 3.5472 0.7321 -0.0060 6 6 3.6373 -0.5843 -0.0045 7 6 4.8809 -1.3778 -0.0093 8 8 4.8269 -2.5926 -0.0068 9 7 6.0769 -0.7564 -0.0165 10 6 7.3118 -1.5445 -0.0219 11 6 8.5177 -0.6029 -0.0302 12 1 8.4469 0.0863 0.8113 13 6 8.5379 0.1904 -1.3406 14 7 9.7684 0.9917 -1.3894 15 6 9.7135 2.3422 -1.6094 16 1 8.8382 2.9021 -1.3148 17 6 10.7826 2.9915 -2.2111 18 7 11.6854 2.2989 -2.8727 19 14 10.9402 4.8484 -2.0820 20 1 11.0420 5.2383 -0.6527 21 1 12.1593 5.2930 -2.8039 22 1 9.7448 5.4898 -2.6861 23 6 11.0592 0.3164 -1.1982 24 6 11.0108 -0.4784 0.1105 25 6 9.8056 -1.4213 0.0858 26 9 9.7765 -2.1714 1.2663 27 9 9.9107 -2.2832 -1.0112 28 6 2.3139 -1.0921 0.0033 29 8 1.9325 -2.3985 0.0077 30 1 -0.3633 0.0032 1.0277 31 1 -0.3633 0.8885 -0.5166 32 1 -0.3634 -0.8915 -0.5111 33 1 6.1199 0.2126 -0.0189 34 1 7.3464 -2.1718 0.8689 35 1 7.3370 -2.1745 -0.9111 36 1 8.5166 -0.4983 -2.1851 37 1 7.6708 0.8496 -1.3821 38 1 12.4323 2.7526 -3.2935 39 1 11.2435 -0.3621 -2.0312 40 1 11.8557 1.0587 -1.1457 41 1 11.9261 -1.0605 0.2167 42 1 10.9171 0.2097 0.9507 43 1 1.8269 -2.7744 0.8924 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046928369.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:15:00 Heat of formation + Delta-G solvation = -86.138079 kcal Electronic energy + Delta-G solvation = -30819.102169 eV Core-core repulsion = 26151.487678 eV Total energy + Delta-G solvation = -4667.614491 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.145 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -48.49093 -46.44073 -42.94248 -39.35389 -37.47353 -37.21048 -34.91220 -33.11810 -32.55625 -31.39821 -30.62859 -30.14671 -27.21948 -26.08270 -25.17757 -23.79815 -22.34057 -21.60157 -21.33183 -20.18309 -19.48274 -18.50853 -17.51638 -17.30136 -16.76551 -16.75080 -16.21117 -16.16900 -15.43469 -15.26092 -15.15685 -14.71512 -14.45418 -14.13014 -14.01506 -13.79518 -13.51976 -13.38773 -13.21881 -13.06568 -12.92361 -12.76882 -12.73599 -12.18461 -11.92050 -11.64932 -11.56284 -11.51412 -11.21470 -10.80614 -10.62657 -10.59123 -10.52828 -10.09184 -10.03715 -9.90433 -9.62710 -9.62382 -9.00879 -8.91811 -8.58897 -6.87758 -5.91660 -3.35693 1.32689 1.61636 2.43066 3.10324 3.31712 3.34304 3.38371 3.38684 3.97131 4.24523 4.31846 4.39397 4.40282 4.64703 4.70916 4.74580 4.94049 5.03373 5.14085 5.25774 5.30224 5.35755 5.44697 5.45294 5.57754 5.68491 5.84778 5.95626 6.05023 6.18837 6.29515 6.37669 6.45215 6.47671 6.60154 6.73926 7.12799 7.38071 7.47063 7.47410 7.66760 7.68027 8.25347 8.29038 9.05289 9.67708 10.23255 11.17580 Molecular weight = 344.14amu Principal moments of inertia in cm(-1) A = 0.011326 B = 0.003193 C = 0.002584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2471.666568 B = 8768.388992 C =10833.838725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.013 4.013 3 N -0.372 5.372 4 H 0.451 0.549 5 N -0.238 5.238 6 C -0.027 4.027 7 C 0.601 3.399 8 O -0.525 6.525 9 N -0.709 5.709 10 C 0.125 3.875 11 C -0.155 4.155 12 H 0.102 0.898 13 C 0.152 3.848 14 N -0.590 5.590 15 C -0.261 4.261 16 H 0.069 0.931 17 C 0.006 3.994 18 N -0.900 5.900 19 Si 0.905 3.095 20 H -0.283 1.283 21 H -0.290 1.290 22 H -0.282 1.282 23 C 0.170 3.830 24 C -0.178 4.178 25 C 0.301 3.699 26 F -0.213 7.213 27 F -0.199 7.199 28 C 0.046 3.954 29 O -0.451 6.451 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.089 0.911 33 H 0.409 0.591 34 H 0.074 0.926 35 H 0.077 0.923 36 H 0.033 0.967 37 H 0.066 0.934 38 H 0.257 0.743 39 H 0.032 0.968 40 H 0.101 0.899 41 H 0.076 0.924 42 H 0.086 0.914 43 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.425 -3.149 8.907 20.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.139 4.139 3 N -0.090 5.090 4 H 0.296 0.704 5 N -0.076 5.076 6 C -0.189 4.189 7 C 0.384 3.616 8 O -0.399 6.399 9 N -0.361 5.361 10 C 0.001 3.999 11 C -0.177 4.177 12 H 0.121 0.879 13 C 0.025 3.975 14 N -0.312 5.312 15 C -0.390 4.390 16 H 0.087 0.913 17 C -0.193 4.193 18 N -0.543 5.543 19 Si 0.735 3.265 20 H -0.209 1.209 21 H -0.216 1.216 22 H -0.208 1.208 23 C 0.044 3.956 24 C -0.218 4.218 25 C 0.264 3.736 26 F -0.194 7.194 27 F -0.180 7.180 28 C -0.010 4.010 29 O -0.257 6.257 30 H 0.097 0.903 31 H 0.091 0.909 32 H 0.108 0.892 33 H 0.245 0.755 34 H 0.092 0.908 35 H 0.096 0.904 36 H 0.051 0.949 37 H 0.085 0.915 38 H 0.067 0.933 39 H 0.050 0.950 40 H 0.119 0.881 41 H 0.095 0.905 42 H 0.104 0.896 43 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -17.601 -3.067 8.168 19.645 hybrid contribution -0.411 1.007 0.551 1.219 sum -18.012 -2.060 8.719 20.117 Atomic orbital electron populations 1.20313 0.85960 1.04311 1.03321 1.21561 0.95437 0.87401 1.09504 1.43082 1.02823 1.09344 1.53765 0.70384 1.73675 1.01685 1.14111 1.18095 1.22407 0.95415 0.90000 1.11042 1.16739 0.81495 0.86423 0.76895 1.90824 1.86644 1.12611 1.49859 1.45793 1.04943 1.11104 1.74272 1.21368 0.81737 0.93538 1.03211 1.22968 0.91550 0.97987 1.05159 0.87943 1.20923 0.91602 0.93648 0.91310 1.44084 0.99691 1.04526 1.82858 1.19128 1.03735 0.82253 1.33890 0.91317 1.25073 0.99231 0.98179 0.96817 1.70012 1.14822 1.34877 1.34599 0.86330 0.77263 0.85158 0.77762 1.20902 1.21562 1.20792 1.20849 0.90215 0.95008 0.89565 1.23269 0.94912 0.98429 1.05227 1.21021 0.98697 0.83001 0.70880 1.92954 1.97708 1.79521 1.49263 1.92968 1.97313 1.72832 1.54869 1.17768 0.88978 0.85104 1.09107 1.84897 1.88735 1.19196 1.32825 0.90297 0.90853 0.89223 0.75466 0.90801 0.90428 0.94891 0.91514 0.93295 0.94953 0.88113 0.90541 0.89581 0.75888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.37 10.44 36.01 0.38 0.01 16 2 C -0.01 -0.11 7.27 -81.70 -0.59 -0.71 16 3 N -0.37 -3.09 6.87 33.71 0.23 -2.86 16 4 H 0.45 1.97 8.96 -190.45 -1.71 0.26 16 5 N -0.24 -2.85 11.91 33.45 0.40 -2.45 16 6 C -0.03 -0.37 7.13 -82.69 -0.59 -0.96 16 7 C 0.60 9.62 7.82 -12.47 -0.10 9.52 16 8 O -0.53 -9.82 16.53 3.10 0.05 -9.77 16 9 N -0.71 -10.60 5.33 -61.35 -0.33 -10.93 16 10 C 0.13 2.01 4.83 -4.04 -0.02 1.99 16 11 C -0.16 -2.64 2.03 -90.50 -0.18 -2.82 16 12 H 0.10 1.67 8.14 -51.93 -0.42 1.25 16 13 C 0.15 3.03 5.40 -3.71 -0.02 3.01 16 14 N -0.59 -13.93 2.99 -172.32 -0.52 -14.45 16 15 C -0.26 -6.74 9.59 -15.06 -0.14 -6.88 16 16 H 0.07 1.72 7.89 -52.49 -0.41 1.30 16 17 C 0.01 0.17 4.91 -17.43 -0.09 0.08 16 18 N -0.90 -25.07 11.19 55.49 0.62 -24.45 16 19 Si 0.91 20.72 29.59 -169.99 -5.03 15.69 16 20 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 21 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 22 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 23 C 0.17 3.87 5.11 -3.71 -0.02 3.85 16 24 C -0.18 -3.31 5.62 -26.61 -0.15 -3.46 16 25 C 0.30 5.44 1.63 -26.69 -0.04 5.40 16 26 F -0.21 -3.75 16.41 2.25 0.04 -3.71 16 27 F -0.20 -3.89 15.73 2.25 0.04 -3.86 16 28 C 0.05 0.55 7.28 -39.12 -0.28 0.27 16 29 O -0.45 -5.20 13.20 -22.21 -0.29 -5.49 16 30 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.07 0.21 8.14 -51.93 -0.42 -0.22 16 32 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.41 5.70 7.41 -40.82 -0.30 5.40 16 34 H 0.07 1.19 7.63 -51.93 -0.40 0.79 16 35 H 0.08 1.34 7.97 -51.93 -0.41 0.92 16 36 H 0.03 0.70 7.92 -51.93 -0.41 0.29 16 37 H 0.07 1.26 7.13 -51.93 -0.37 0.89 16 38 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 39 H 0.03 0.79 7.92 -51.93 -0.41 0.38 16 40 H 0.10 2.53 6.04 -51.93 -0.31 2.21 16 41 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 42 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 43 H 0.39 2.76 9.07 45.56 0.41 3.17 16 LS Contribution 365.20 15.07 5.50 5.50 Total: -1.00 -33.55 365.20 -7.14 -40.69 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: -6.00 Total: 6.79 kcal Atomic # 6 Polarization: 11.14 SS G_CDS: -1.86 Total: 9.29 kcal Atomic # 7 Polarization: -55.54 SS G_CDS: 0.41 Total: -55.13 kcal Atomic # 8 Polarization: -15.02 SS G_CDS: -0.24 Total: -15.26 kcal Atomic # 9 Polarization: -7.64 SS G_CDS: 0.07 Total: -7.57 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.03 Total: 15.69 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.55 -7.14 -40.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046928369.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.447 kcal (2) G-P(sol) polarization free energy of solvation -33.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds