Wall clock time and date at job start Wed Apr 1 2020 03:15:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.35828 * 126.46107 * 2 1 4 4 H 0.97001 * 124.92259 * 359.97438 * 3 2 1 5 5 N 1.28460 * 110.16864 * 179.70598 * 3 2 1 6 6 C 1.31933 * 110.20781 * 0.45593 * 5 3 2 7 7 C 1.47519 * 126.46339 * 179.82051 * 6 5 3 8 8 O 1.21592 * 120.00587 * 179.68760 * 7 6 5 9 9 N 1.34783 * 119.99912 * 359.68694 * 7 6 5 10 10 C 1.46493 * 119.99995 * 180.02562 * 9 7 6 11 11 C 1.53004 * 109.47069 * 180.02562 * 10 9 7 12 12 H 1.09001 * 109.49550 * 305.06486 * 11 10 9 13 13 C 1.53621 * 109.45810 * 65.27094 * 11 10 9 14 14 N 1.46927 * 108.54388 * 174.74089 * 13 11 10 15 15 C 1.36934 * 120.63082 * 126.36590 * 14 13 11 16 16 H 1.07997 * 120.00180 * 331.76631 * 15 14 13 17 17 C 1.38806 * 119.99847 * 151.48870 * 15 14 13 18 18 N 1.31623 * 120.00305 * 342.89029 * 17 15 14 19 19 Si 1.86804 * 120.00174 * 162.88963 * 17 15 14 20 20 H 1.48500 * 109.47015 * 94.07903 * 19 17 15 21 21 H 1.48497 * 109.47296 * 214.08235 * 19 17 15 22 22 H 1.48500 * 109.46610 * 334.08191 * 19 17 15 23 23 C 1.46924 * 118.73892 * 306.09631 * 14 13 11 24 24 C 1.53190 * 108.77602 * 53.85755 * 23 14 13 25 25 C 1.53041 * 109.31438 * 305.36257 * 24 23 14 26 26 F 1.39894 * 109.46107 * 181.38365 * 25 24 23 27 27 F 1.39896 * 109.46081 * 301.36128 * 25 24 23 28 28 C 1.35777 * 126.45596 * 179.97438 * 2 1 3 29 29 O 1.36088 * 127.27079 * 0.02562 * 28 2 1 30 30 H 1.09002 * 109.47000 * 270.02902 * 1 2 3 31 31 H 1.09006 * 109.47026 * 30.02270 * 1 2 3 32 32 H 1.08996 * 109.47607 * 150.02485 * 1 2 3 33 33 H 0.97000 * 119.99590 * 0.02562 * 9 7 6 34 34 H 1.08994 * 109.47667 * 59.99979 * 10 9 7 35 35 H 1.09005 * 109.47307 * 299.99709 * 10 9 7 36 36 H 1.09004 * 109.74173 * 55.00590 * 13 11 10 37 37 H 1.09004 * 109.66565 * 294.43458 * 13 11 10 38 38 H 0.97003 * 120.00291 * 180.02562 * 18 17 15 39 39 H 1.09000 * 109.58704 * 173.64511 * 23 14 13 40 40 H 1.09004 * 109.58762 * 293.93248 * 23 14 13 41 41 H 1.08992 * 109.50091 * 65.31745 * 24 23 14 42 42 H 1.09005 * 109.50026 * 185.38584 * 24 23 14 43 43 H 0.96698 * 114.00093 * 269.98324 * 29 28 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3142 1.0924 0.0000 4 1 2.0046 2.0117 -0.0004 5 7 3.5472 0.7320 0.0062 6 6 3.6373 -0.5842 0.0007 7 6 4.8809 -1.3778 0.0013 8 8 4.8270 -2.5926 0.0015 9 7 6.0769 -0.7564 0.0015 10 6 7.3118 -1.5445 0.0015 11 6 8.5177 -0.6029 0.0024 12 1 8.4414 0.0867 -0.8383 13 6 8.5477 0.1889 1.3184 14 7 9.7782 0.9911 1.3532 15 6 9.7247 2.3415 1.5741 16 1 8.8492 2.9022 1.2817 17 6 10.7933 2.9886 2.1792 18 7 11.6960 2.2935 2.8382 19 14 10.9503 4.8461 2.0580 20 1 10.3280 5.4743 3.2511 21 1 12.3865 5.2184 1.9950 22 1 10.2612 5.3221 0.8318 23 6 11.0676 0.3160 1.1523 24 6 11.0097 -0.4781 -0.1564 25 6 9.8049 -1.4213 -0.1234 26 9 9.7672 -2.1707 -1.3040 27 9 9.9177 -2.2833 0.9726 28 6 2.3138 -1.0921 0.0005 29 8 1.9325 -2.3984 0.0006 30 1 -0.3633 0.0005 1.0277 31 1 -0.3633 0.8898 -0.5142 32 1 -0.3634 -0.8901 -0.5134 33 1 6.1199 0.2126 0.0016 34 1 7.3418 -2.1730 -0.8885 35 1 7.3416 -2.1733 0.8914 36 1 8.5368 -0.5001 2.1630 37 1 7.6806 0.8474 1.3702 38 1 12.4426 2.7458 3.2613 39 1 11.8636 1.0583 1.0944 40 1 11.2591 -0.3611 1.9848 41 1 10.9100 0.2102 -0.9956 42 1 11.9246 -1.0599 -0.2698 43 1 1.8222 -2.7759 0.8840 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046928370.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:15:03 Heat of formation + Delta-G solvation = -86.484340 kcal Electronic energy + Delta-G solvation = -30817.937378 eV Core-core repulsion = 26150.307872 eV Total energy + Delta-G solvation = -4667.629506 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.145 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -48.48877 -46.44058 -42.94165 -39.34967 -37.46384 -37.19872 -34.90947 -33.11653 -32.55588 -31.39635 -30.62040 -30.15019 -27.21867 -26.07948 -25.17996 -23.79759 -22.33830 -21.59875 -21.33020 -20.18371 -19.48843 -18.50447 -17.52022 -17.29172 -16.77221 -16.74986 -16.21204 -16.16308 -15.43835 -15.25376 -15.15412 -14.72238 -14.44310 -14.12893 -14.01568 -13.79358 -13.52388 -13.38744 -13.21930 -13.05851 -12.92756 -12.76951 -12.74074 -12.18707 -11.91893 -11.64502 -11.55522 -11.51618 -11.22775 -10.81178 -10.62626 -10.59868 -10.52421 -10.09293 -10.04863 -9.89245 -9.63231 -9.62052 -9.00766 -8.91597 -8.59926 -6.87442 -5.92573 -3.36941 1.32811 1.61628 2.43333 3.10660 3.30024 3.34323 3.38045 3.39670 3.97778 4.24793 4.31832 4.39039 4.40310 4.64890 4.71005 4.74759 4.94131 5.03845 5.14165 5.25977 5.29753 5.35772 5.44538 5.45027 5.57692 5.68055 5.84793 5.95773 6.04839 6.18518 6.29491 6.37467 6.45431 6.47257 6.60235 6.73104 7.11926 7.38151 7.46479 7.47686 7.66785 7.68047 8.25533 8.28528 9.04626 9.66980 10.22804 11.16598 Molecular weight = 344.14amu Principal moments of inertia in cm(-1) A = 0.011309 B = 0.003192 C = 0.002585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2475.391430 B = 8769.098883 C =10828.339439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.013 4.013 3 N -0.373 5.373 4 H 0.451 0.549 5 N -0.238 5.238 6 C -0.027 4.027 7 C 0.601 3.399 8 O -0.525 6.525 9 N -0.709 5.709 10 C 0.125 3.875 11 C -0.156 4.156 12 H 0.103 0.897 13 C 0.153 3.847 14 N -0.590 5.590 15 C -0.260 4.260 16 H 0.069 0.931 17 C 0.006 3.994 18 N -0.899 5.899 19 Si 0.904 3.096 20 H -0.287 1.287 21 H -0.289 1.289 22 H -0.278 1.278 23 C 0.170 3.830 24 C -0.178 4.178 25 C 0.301 3.699 26 F -0.213 7.213 27 F -0.199 7.199 28 C 0.046 3.954 29 O -0.452 6.452 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.089 0.911 33 H 0.409 0.591 34 H 0.074 0.926 35 H 0.077 0.923 36 H 0.033 0.967 37 H 0.067 0.933 38 H 0.256 0.744 39 H 0.100 0.900 40 H 0.033 0.967 41 H 0.086 0.914 42 H 0.076 0.924 43 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.472 -3.142 -5.602 19.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.139 4.139 3 N -0.090 5.090 4 H 0.296 0.704 5 N -0.076 5.076 6 C -0.189 4.189 7 C 0.384 3.616 8 O -0.399 6.399 9 N -0.361 5.361 10 C 0.001 3.999 11 C -0.177 4.177 12 H 0.121 0.879 13 C 0.026 3.974 14 N -0.312 5.312 15 C -0.390 4.390 16 H 0.087 0.913 17 C -0.193 4.193 18 N -0.543 5.543 19 Si 0.733 3.267 20 H -0.214 1.214 21 H -0.215 1.215 22 H -0.203 1.203 23 C 0.044 3.956 24 C -0.218 4.218 25 C 0.264 3.736 26 F -0.194 7.194 27 F -0.180 7.180 28 C -0.010 4.010 29 O -0.257 6.257 30 H 0.098 0.902 31 H 0.091 0.909 32 H 0.107 0.893 33 H 0.245 0.755 34 H 0.092 0.908 35 H 0.095 0.905 36 H 0.051 0.949 37 H 0.085 0.915 38 H 0.066 0.934 39 H 0.118 0.882 40 H 0.051 0.949 41 H 0.104 0.896 42 H 0.095 0.905 43 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -17.646 -3.060 -6.107 18.922 hybrid contribution -0.399 1.004 0.450 1.170 sum -18.045 -2.056 -5.656 19.022 Atomic orbital electron populations 1.20313 0.85964 1.04238 1.03394 1.21561 0.95437 0.87411 1.09494 1.43078 1.02826 1.09340 1.53779 0.70383 1.73674 1.01680 1.14114 1.18094 1.22404 0.95422 0.90004 1.11031 1.16739 0.81497 0.86423 0.76895 1.90824 1.86646 1.12613 1.49859 1.45791 1.04938 1.11104 1.74271 1.21365 0.81751 0.93544 1.03201 1.23053 0.91516 0.97993 1.05143 0.87925 1.21010 0.91620 0.93618 0.91187 1.44105 0.99845 1.04497 1.82728 1.19160 1.03758 0.82273 1.33761 0.91307 1.25090 0.99256 0.98172 0.96778 1.70025 1.14827 1.34732 1.34685 0.86266 0.77165 0.85258 0.77964 1.21359 1.21464 1.20302 1.20829 0.90178 0.95012 0.89578 1.23263 0.94930 0.98431 1.05187 1.21019 0.98676 0.82998 0.70906 1.92956 1.97685 1.79546 1.49236 1.92964 1.97257 1.72838 1.54948 1.17767 0.88978 0.85112 1.09097 1.84883 1.88723 1.19178 1.32962 0.90233 0.90886 0.89251 0.75467 0.90802 0.90454 0.94882 0.91508 0.93369 0.88224 0.94934 0.89565 0.90546 0.75796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.37 10.44 36.01 0.38 0.01 16 2 C -0.01 -0.11 7.27 -81.70 -0.59 -0.71 16 3 N -0.37 -3.09 6.87 33.71 0.23 -2.86 16 4 H 0.45 1.97 8.96 -190.44 -1.71 0.26 16 5 N -0.24 -2.85 11.91 33.45 0.40 -2.45 16 6 C -0.03 -0.37 7.13 -82.69 -0.59 -0.96 16 7 C 0.60 9.62 7.82 -12.47 -0.10 9.52 16 8 O -0.53 -9.83 16.53 3.10 0.05 -9.77 16 9 N -0.71 -10.60 5.33 -61.36 -0.33 -10.93 16 10 C 0.13 2.01 4.83 -4.04 -0.02 1.99 16 11 C -0.16 -2.65 2.04 -90.27 -0.18 -2.83 16 12 H 0.10 1.68 8.14 -51.93 -0.42 1.26 16 13 C 0.15 3.02 5.42 -3.49 -0.02 3.00 16 14 N -0.59 -13.86 2.99 -172.06 -0.51 -14.37 16 15 C -0.26 -6.69 9.58 -15.06 -0.14 -6.84 16 16 H 0.07 1.72 7.89 -52.49 -0.41 1.30 16 17 C 0.01 0.17 4.91 -17.43 -0.09 0.08 16 18 N -0.90 -24.96 11.21 55.49 0.62 -24.34 16 19 Si 0.90 20.63 29.59 -169.99 -5.03 15.60 16 20 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 21 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 23 C 0.17 3.86 5.09 -3.71 -0.02 3.84 16 24 C -0.18 -3.31 5.62 -26.61 -0.15 -3.46 16 25 C 0.30 5.44 1.63 -26.69 -0.04 5.40 16 26 F -0.21 -3.77 16.40 2.25 0.04 -3.73 16 27 F -0.20 -3.88 15.73 2.25 0.04 -3.84 16 28 C 0.05 0.55 7.28 -39.12 -0.28 0.27 16 29 O -0.45 -5.21 13.20 -22.21 -0.29 -5.50 16 30 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 32 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.41 5.70 7.44 -40.82 -0.30 5.40 16 34 H 0.07 1.21 7.63 -51.93 -0.40 0.81 16 35 H 0.08 1.31 7.97 -51.93 -0.41 0.90 16 36 H 0.03 0.70 7.92 -51.93 -0.41 0.29 16 37 H 0.07 1.25 7.16 -51.93 -0.37 0.88 16 38 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 39 H 0.10 2.49 6.07 -51.93 -0.32 2.18 16 40 H 0.03 0.79 7.93 -51.93 -0.41 0.38 16 41 H 0.09 1.54 8.14 -51.93 -0.42 1.11 16 42 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 43 H 0.39 2.84 9.07 45.56 0.41 3.26 16 LS Contribution 365.34 15.07 5.51 5.51 Total: -1.00 -33.42 365.34 -7.14 -40.56 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: -6.00 Total: 6.81 kcal Atomic # 6 Polarization: 11.17 SS G_CDS: -1.85 Total: 9.32 kcal Atomic # 7 Polarization: -55.36 SS G_CDS: 0.41 Total: -54.95 kcal Atomic # 8 Polarization: -15.03 SS G_CDS: -0.24 Total: -15.27 kcal Atomic # 9 Polarization: -7.65 SS G_CDS: 0.07 Total: -7.57 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.03 Total: 15.60 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -33.42 -7.14 -40.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046928370.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.926 kcal (2) G-P(sol) polarization free energy of solvation -33.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds