Wall clock time and date at job start Wed Apr 1 2020 03:15:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.35828 * 126.46107 * 2 1 4 4 H 0.97001 * 124.92259 * 359.97438 * 3 2 1 5 5 N 1.28460 * 110.16864 * 179.70598 * 3 2 1 6 6 C 1.31933 * 110.20781 * 0.45593 * 5 3 2 7 7 C 1.47519 * 126.46339 * 179.82051 * 6 5 3 8 8 O 1.21592 * 120.00587 * 179.68760 * 7 6 5 9 9 N 1.34783 * 119.99912 * 359.68694 * 7 6 5 10 10 C 1.46493 * 119.99995 * 180.02562 * 9 7 6 11 11 C 1.53004 * 109.47069 * 180.02562 * 10 9 7 12 12 H 1.09001 * 109.49550 * 305.06486 * 11 10 9 13 13 C 1.53621 * 109.45810 * 65.27094 * 11 10 9 14 14 N 1.46927 * 108.54388 * 174.74089 * 13 11 10 15 15 C 1.36934 * 120.63082 * 126.36590 * 14 13 11 16 16 H 1.07997 * 120.00180 * 331.76631 * 15 14 13 17 17 C 1.38806 * 119.99847 * 151.48870 * 15 14 13 18 18 N 1.31623 * 120.00305 * 342.89029 * 17 15 14 19 19 Si 1.86804 * 120.00174 * 162.88963 * 17 15 14 20 20 H 1.48500 * 109.47015 * 94.07903 * 19 17 15 21 21 H 1.48497 * 109.47296 * 214.08235 * 19 17 15 22 22 H 1.48500 * 109.46610 * 334.08191 * 19 17 15 23 23 C 1.46924 * 118.73892 * 306.09631 * 14 13 11 24 24 C 1.53190 * 108.77602 * 53.85755 * 23 14 13 25 25 C 1.53041 * 109.31438 * 305.36257 * 24 23 14 26 26 F 1.39894 * 109.46107 * 181.38365 * 25 24 23 27 27 F 1.39896 * 109.46081 * 301.36128 * 25 24 23 28 28 C 1.35777 * 126.45596 * 179.97438 * 2 1 3 29 29 O 1.36088 * 127.27079 * 0.02562 * 28 2 1 30 30 H 1.09002 * 109.47000 * 270.02902 * 1 2 3 31 31 H 1.09006 * 109.47026 * 30.02270 * 1 2 3 32 32 H 1.08996 * 109.47607 * 150.02485 * 1 2 3 33 33 H 0.97000 * 119.99590 * 0.02562 * 9 7 6 34 34 H 1.08994 * 109.47667 * 59.99979 * 10 9 7 35 35 H 1.09005 * 109.47307 * 299.99709 * 10 9 7 36 36 H 1.09004 * 109.74173 * 55.00590 * 13 11 10 37 37 H 1.09004 * 109.66565 * 294.43458 * 13 11 10 38 38 H 0.97003 * 120.00291 * 180.02562 * 18 17 15 39 39 H 1.09000 * 109.58704 * 173.64511 * 23 14 13 40 40 H 1.09004 * 109.58762 * 293.93248 * 23 14 13 41 41 H 1.08992 * 109.50091 * 65.31745 * 24 23 14 42 42 H 1.09005 * 109.50026 * 185.38584 * 24 23 14 43 43 H 0.96698 * 114.00093 * 269.98324 * 29 28 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3142 1.0924 0.0000 4 1 2.0046 2.0117 -0.0004 5 7 3.5472 0.7320 0.0062 6 6 3.6373 -0.5842 0.0007 7 6 4.8809 -1.3778 0.0013 8 8 4.8270 -2.5926 0.0015 9 7 6.0769 -0.7564 0.0015 10 6 7.3118 -1.5445 0.0015 11 6 8.5177 -0.6029 0.0024 12 1 8.4414 0.0867 -0.8383 13 6 8.5477 0.1889 1.3184 14 7 9.7782 0.9911 1.3532 15 6 9.7247 2.3415 1.5741 16 1 8.8492 2.9022 1.2817 17 6 10.7933 2.9886 2.1792 18 7 11.6960 2.2935 2.8382 19 14 10.9503 4.8461 2.0580 20 1 10.3280 5.4743 3.2511 21 1 12.3865 5.2184 1.9950 22 1 10.2612 5.3221 0.8318 23 6 11.0676 0.3160 1.1523 24 6 11.0097 -0.4781 -0.1564 25 6 9.8049 -1.4213 -0.1234 26 9 9.7672 -2.1707 -1.3040 27 9 9.9177 -2.2833 0.9726 28 6 2.3138 -1.0921 0.0005 29 8 1.9325 -2.3984 0.0006 30 1 -0.3633 0.0005 1.0277 31 1 -0.3633 0.8898 -0.5142 32 1 -0.3634 -0.8901 -0.5134 33 1 6.1199 0.2126 0.0016 34 1 7.3418 -2.1730 -0.8885 35 1 7.3416 -2.1733 0.8914 36 1 8.5368 -0.5001 2.1630 37 1 7.6806 0.8474 1.3702 38 1 12.4426 2.7458 3.2613 39 1 11.8636 1.0583 1.0944 40 1 11.2591 -0.3611 1.9848 41 1 10.9100 0.2102 -0.9956 42 1 11.9246 -1.0599 -0.2698 43 1 1.8222 -2.7759 0.8840 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046928370.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:15:02 Heat of formation + Delta-G solvation = -112.268573 kcal Electronic energy + Delta-G solvation = -30819.055466 eV Core-core repulsion = 26150.307872 eV Total energy + Delta-G solvation = -4668.747594 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.145 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -49.99223 -47.94664 -43.75121 -40.61228 -38.92894 -38.18664 -36.38128 -34.45448 -33.69422 -32.45675 -32.05918 -31.71809 -27.89200 -27.45185 -26.98117 -25.01372 -23.96609 -22.88502 -22.35955 -21.45033 -20.99395 -19.30479 -19.02040 -18.32835 -18.19757 -18.02985 -17.59013 -17.09120 -17.00399 -16.83388 -16.49567 -16.26726 -15.52222 -15.43352 -15.20395 -15.12981 -14.79655 -14.68904 -14.57496 -14.30210 -14.25508 -13.81078 -13.73078 -13.30342 -13.26594 -13.18290 -13.06536 -13.03229 -12.70963 -12.57544 -12.29688 -12.19132 -11.91741 -11.64961 -11.61634 -11.36483 -11.07720 -10.57667 -10.52812 -10.15868 -9.74338 -8.80071 -7.91037 -5.37934 0.36410 0.84783 1.49618 1.52383 1.61567 1.71767 2.00820 2.20706 2.49634 2.78572 3.07889 3.17466 3.22771 3.28143 3.50961 3.58840 3.65204 3.72613 3.90347 3.95421 4.08422 4.22879 4.40582 4.48771 4.56795 4.63824 4.76226 4.77302 4.81817 4.84820 4.88383 4.98906 5.07021 5.20968 5.23107 5.29758 5.58859 5.66195 5.98581 6.32991 6.35240 6.71650 6.80010 7.05642 7.08614 7.75716 8.28911 9.17067 Molecular weight = 344.14amu Principal moments of inertia in cm(-1) A = 0.011309 B = 0.003192 C = 0.002585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2475.391430 B = 8769.098883 C =10828.339439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.012 3.988 3 N -0.352 5.352 4 H 0.469 0.531 5 N -0.250 5.250 6 C -0.059 4.059 7 C 0.599 3.401 8 O -0.561 6.561 9 N -0.703 5.703 10 C 0.135 3.865 11 C -0.139 4.139 12 H 0.117 0.883 13 C 0.156 3.844 14 N -0.605 5.605 15 C -0.265 4.265 16 H 0.077 0.923 17 C -0.046 4.046 18 N -0.934 5.934 19 Si 0.968 3.032 20 H -0.288 1.288 21 H -0.295 1.295 22 H -0.265 1.265 23 C 0.177 3.823 24 C -0.168 4.168 25 C 0.301 3.699 26 F -0.206 7.206 27 F -0.209 7.209 28 C 0.017 3.983 29 O -0.467 6.467 30 H 0.098 0.902 31 H 0.099 0.901 32 H 0.088 0.912 33 H 0.415 0.585 34 H 0.074 0.926 35 H 0.065 0.935 36 H 0.017 0.983 37 H 0.077 0.923 38 H 0.252 0.748 39 H 0.074 0.926 40 H 0.005 0.995 41 H 0.099 0.901 42 H 0.094 0.906 43 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.799 -1.764 -6.810 21.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.115 4.115 3 N -0.073 5.073 4 H 0.318 0.682 5 N -0.089 5.089 6 C -0.219 4.219 7 C 0.385 3.615 8 O -0.438 6.438 9 N -0.355 5.355 10 C 0.011 3.989 11 C -0.160 4.160 12 H 0.135 0.865 13 C 0.030 3.970 14 N -0.327 5.327 15 C -0.395 4.395 16 H 0.095 0.905 17 C -0.241 4.241 18 N -0.579 5.579 19 Si 0.796 3.204 20 H -0.215 1.215 21 H -0.221 1.221 22 H -0.190 1.190 23 C 0.051 3.949 24 C -0.207 4.207 25 C 0.264 3.736 26 F -0.187 7.187 27 F -0.190 7.190 28 C -0.038 4.038 29 O -0.274 6.274 30 H 0.117 0.883 31 H 0.117 0.883 32 H 0.107 0.893 33 H 0.252 0.748 34 H 0.093 0.907 35 H 0.084 0.916 36 H 0.035 0.965 37 H 0.096 0.904 38 H 0.061 0.939 39 H 0.093 0.907 40 H 0.023 0.977 41 H 0.118 0.882 42 H 0.112 0.888 43 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -19.999 -1.660 -7.326 21.363 hybrid contribution 0.220 0.566 0.859 1.052 sum -19.779 -1.094 -6.467 20.838 Atomic orbital electron populations 1.20503 0.82708 1.05498 1.04996 1.22044 0.96976 0.86067 1.06405 1.43226 1.01862 1.10455 1.51730 0.68152 1.73589 1.03429 1.13246 1.18598 1.22199 0.95166 0.90831 1.13737 1.17082 0.82269 0.86260 0.75929 1.90788 1.87246 1.14142 1.51595 1.45704 1.04475 1.11241 1.74040 1.21167 0.81847 0.93213 1.02672 1.22852 0.91498 0.97801 1.03884 0.86477 1.21027 0.90601 0.93342 0.92066 1.44329 1.01017 1.04443 1.82928 1.19538 1.03789 0.83447 1.32712 0.90501 1.25830 0.99293 1.02081 0.96937 1.70177 1.15449 1.36198 1.36113 0.85260 0.76570 0.80471 0.78086 1.21518 1.22135 1.18970 1.20567 0.89422 0.94085 0.90788 1.23094 0.96155 0.98454 1.03026 1.21022 0.98860 0.82880 0.70814 1.92969 1.97667 1.79355 1.48719 1.92953 1.97304 1.73163 1.55555 1.18060 0.88927 0.85994 1.10856 1.84831 1.88600 1.19506 1.34459 0.88309 0.88274 0.89309 0.74753 0.90737 0.91631 0.96454 0.90439 0.93923 0.90738 0.97651 0.88229 0.88780 0.74255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.43 10.44 71.24 0.74 0.31 16 2 C 0.01 0.18 7.27 41.37 0.30 0.48 16 3 N -0.35 -4.93 6.87 -47.27 -0.32 -5.25 16 4 H 0.47 2.54 8.96 -220.00 -1.97 0.57 16 5 N -0.25 -5.61 11.91 -48.09 -0.57 -6.18 16 6 C -0.06 -1.61 7.13 42.45 0.30 -1.31 16 7 C 0.60 19.29 7.82 86.69 0.68 19.97 16 8 O -0.56 -21.41 16.53 -1.91 -0.03 -21.44 16 9 N -0.70 -20.76 5.33 -466.29 -2.49 -23.25 16 10 C 0.14 4.28 4.83 86.38 0.42 4.70 16 11 C -0.14 -4.60 2.04 -10.57 -0.02 -4.62 16 12 H 0.12 3.60 8.14 -2.39 -0.02 3.58 16 13 C 0.16 6.12 5.42 86.51 0.47 6.58 16 14 N -0.60 -28.44 2.99 -698.26 -2.09 -30.53 16 15 C -0.27 -13.54 9.58 84.03 0.80 -12.73 16 16 H 0.08 3.73 7.89 -2.91 -0.02 3.71 16 17 C -0.05 -2.40 4.91 84.86 0.42 -1.99 16 18 N -0.93 -52.95 11.21 21.65 0.24 -52.71 16 19 Si 0.97 42.38 29.59 68.60 2.03 44.41 16 20 H -0.29 -12.59 7.11 99.48 0.71 -11.89 16 21 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 22 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 23 C 0.18 8.17 5.09 86.36 0.44 8.61 16 24 C -0.17 -6.06 5.62 30.67 0.17 -5.89 16 25 C 0.30 10.59 1.63 30.62 0.05 10.64 16 26 F -0.21 -6.93 16.40 44.97 0.74 -6.19 16 27 F -0.21 -8.11 15.73 44.97 0.71 -7.40 16 28 C 0.02 0.40 7.28 22.57 0.16 0.56 16 29 O -0.47 -10.57 13.20 -92.46 -1.22 -11.79 16 30 H 0.10 0.25 8.14 -2.39 -0.02 0.23 16 31 H 0.10 0.08 8.14 -2.38 -0.02 0.06 16 32 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.42 11.21 7.44 -92.71 -0.69 10.52 16 34 H 0.07 2.39 7.63 -2.39 -0.02 2.37 16 35 H 0.07 2.25 7.97 -2.38 -0.02 2.23 16 36 H 0.02 0.74 7.92 -2.38 -0.02 0.73 16 37 H 0.08 2.84 7.16 -2.38 -0.02 2.83 16 38 H 0.25 13.86 8.31 -92.71 -0.77 13.09 16 39 H 0.07 3.82 6.07 -2.39 -0.01 3.80 16 40 H 0.01 0.27 7.93 -2.38 -0.02 0.25 16 41 H 0.10 3.37 8.14 -2.39 -0.02 3.35 16 42 H 0.09 3.06 8.14 -2.38 -0.02 3.04 16 43 H 0.40 5.84 9.07 -74.06 -0.67 5.17 16 Total: -1.00 -73.15 365.34 -0.29 -73.44 By element: Atomic # 1 Polarization: 23.80 SS G_CDS: -2.23 Total: 21.57 kcal Atomic # 6 Polarization: 20.38 SS G_CDS: 4.94 Total: 25.32 kcal Atomic # 7 Polarization: -112.69 SS G_CDS: -5.22 Total: -117.91 kcal Atomic # 8 Polarization: -31.98 SS G_CDS: -1.25 Total: -33.23 kcal Atomic # 9 Polarization: -15.04 SS G_CDS: 1.44 Total: -13.59 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.41 kcal Total: -73.15 -0.29 -73.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046928370.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.828 kcal (2) G-P(sol) polarization free energy of solvation -73.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds