Wall clock time and date at job start Wed Apr 1 2020 02:21:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.33803 * 125.07775 * 2 1 4 4 C 1.34915 * 111.34889 * 180.02562 * 3 2 1 5 5 C 1.38970 * 133.11400 * 180.02562 * 4 3 2 6 6 C 1.37842 * 119.97194 * 180.02562 * 5 4 3 7 7 C 1.38687 * 120.64997 * 359.91364 * 6 5 4 8 8 C 1.37839 * 120.20869 * 0.07169 * 7 6 5 9 9 C 1.39114 * 119.62332 * 359.96633 * 8 7 6 10 10 C 1.36055 * 125.06824 * 180.02562 * 2 1 3 11 11 C 1.47082 * 127.14209 * 359.73653 * 10 2 1 12 12 O 1.21649 * 119.99659 * 90.03150 * 11 10 2 13 13 N 1.34767 * 120.00236 * 270.02311 * 11 10 2 14 14 C 1.46502 * 119.99811 * 0.02562 * 13 11 10 15 15 C 1.46504 * 120.00072 * 179.97438 * 13 11 10 16 16 H 1.09000 * 110.64131 * 3.15258 * 15 13 11 17 17 C 1.54323 * 110.71558 * 126.48205 * 15 13 11 18 18 N 1.47022 * 107.27122 * 140.56021 * 17 15 13 19 19 C 1.36941 * 125.64952 * 181.10855 * 18 17 15 20 20 H 1.07999 * 120.00114 * 359.96457 * 19 18 17 21 21 C 1.38818 * 119.99858 * 179.97438 * 19 18 17 22 22 N 1.31618 * 119.99801 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 119.99805 * 179.97438 * 21 19 18 24 24 H 1.48508 * 109.47197 * 89.99756 * 23 21 19 25 25 H 1.48498 * 109.47033 * 209.99360 * 23 21 19 26 26 H 1.48500 * 109.47143 * 329.99647 * 23 21 19 27 27 C 1.47425 * 108.70172 * 1.05546 * 18 17 15 28 28 C 1.54904 * 104.83481 * 335.87405 * 27 18 17 29 29 H 1.09000 * 111.00716 * 278.93302 * 28 27 18 30 30 O 1.42900 * 111.04212 * 155.09257 * 28 27 18 31 31 H 1.08995 * 109.46912 * 270.00431 * 1 2 3 32 32 H 1.09005 * 109.46413 * 30.00213 * 1 2 3 33 33 H 1.09001 * 109.47586 * 149.99332 * 1 2 3 34 34 H 1.07997 * 120.01538 * 359.97438 * 5 4 3 35 35 H 1.07999 * 119.67226 * 179.97438 * 6 5 4 36 36 H 1.08007 * 119.89185 * 180.02562 * 7 6 5 37 37 H 1.07999 * 120.18501 * 179.97438 * 8 7 6 38 38 H 1.08997 * 109.47323 * 89.99964 * 14 13 11 39 39 H 1.09004 * 109.47022 * 209.99516 * 14 13 11 40 40 H 1.08992 * 109.47252 * 329.99173 * 14 13 11 41 41 H 1.08994 * 109.88616 * 259.97490 * 17 15 13 42 42 H 1.09001 * 109.88747 * 21.14451 * 17 15 13 43 43 H 0.97008 * 119.99740 * 180.02562 * 22 21 19 44 44 H 1.08996 * 110.36949 * 217.03506 * 27 18 17 45 45 H 1.08998 * 110.45946 * 94.76161 * 27 18 17 46 46 H 0.96707 * 113.99772 * 67.78278 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2760 1.0950 0.0000 4 6 3.5866 0.7748 -0.0006 5 6 4.7500 1.5349 -0.0003 6 6 5.9796 0.9119 -0.0016 7 6 6.0710 -0.4720 -0.0013 8 6 4.9281 -1.2425 -0.0013 9 6 3.6819 -0.6242 -0.0008 10 6 2.2887 -1.1136 -0.0005 11 6 1.8394 -2.5140 0.0043 12 8 1.6501 -3.0956 -1.0473 13 7 1.6374 -3.1530 1.1735 14 6 1.8650 -2.4524 2.4399 15 6 1.1893 -4.5478 1.1782 16 1 1.1215 -4.9331 0.1608 17 6 2.1303 -5.4206 2.0350 18 7 1.2896 -6.3754 2.7720 19 6 1.7398 -7.3140 3.6618 20 1 2.7960 -7.3968 3.8711 21 6 0.8384 -8.1592 4.2945 22 7 -0.4489 -8.0580 4.0395 23 14 1.4525 -9.4399 5.5076 24 1 1.4813 -8.8553 6.8725 25 1 0.5430 -10.6137 5.4911 26 1 2.8214 -9.8690 5.1239 27 6 -0.1184 -6.1541 2.3954 28 6 -0.1726 -4.6845 1.9089 29 1 -0.2347 -3.9960 2.7517 30 8 -1.2611 -4.4829 1.0053 31 1 -0.3633 0.0001 1.0276 32 1 -0.3632 0.8900 -0.5139 33 1 -0.3634 -0.8899 -0.5139 34 1 4.6908 2.6132 0.0000 35 1 6.8806 1.5073 -0.0019 36 1 7.0408 -0.9474 -0.0019 37 1 4.9997 -2.3201 -0.0015 38 1 0.9428 -1.9651 2.7563 39 1 2.1769 -3.1684 3.2003 40 1 2.6445 -1.7027 2.3054 41 1 2.8254 -5.9591 1.3909 42 1 2.6813 -4.7938 2.7362 43 1 -1.0788 -8.6483 4.4820 44 1 -0.7684 -6.2919 3.2594 45 1 -0.4087 -6.8307 1.5916 46 1 -2.1330 -4.5587 1.4167 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047392639.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:21:02 Heat of formation + Delta-G solvation = -10.420082 kcal Electronic energy + Delta-G solvation = -30686.734175 eV Core-core repulsion = 26544.339841 eV Total energy + Delta-G solvation = -4142.394334 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.78612 -39.77724 -38.13205 -37.76853 -35.22438 -34.75505 -33.50990 -31.87566 -31.48286 -30.61889 -28.77005 -27.58214 -27.20488 -26.56960 -24.62483 -23.32744 -22.97392 -21.79246 -20.49764 -20.11627 -18.91713 -17.85635 -17.22497 -17.14994 -16.91462 -16.58263 -15.96871 -15.75159 -15.40650 -14.97480 -14.74998 -14.23184 -13.99880 -13.92398 -13.72738 -13.46271 -13.33216 -13.22618 -12.90777 -12.71411 -12.55935 -12.44516 -12.26039 -12.18141 -11.94518 -11.73155 -11.52687 -11.24989 -11.17618 -10.98497 -10.85610 -10.31498 -10.20684 -9.96200 -9.84355 -9.74548 -9.29245 -8.86568 -8.75770 -8.38261 -8.32003 -6.96733 -5.75627 -3.19169 0.62979 1.09306 1.89110 2.34985 2.58579 3.14180 3.34625 3.40189 3.42183 3.47411 4.11175 4.32404 4.39788 4.62635 4.69311 4.75932 4.88837 4.95251 5.05316 5.13533 5.19827 5.23097 5.30197 5.34021 5.38148 5.48209 5.52758 5.62095 5.64866 5.67397 5.82709 5.87798 5.96270 5.97667 6.06142 6.12653 6.15448 6.20789 6.39075 6.43596 6.58078 6.87532 6.89933 7.31186 7.47111 7.54080 7.69191 8.12824 8.23204 8.28346 9.09371 9.69870 10.32124 11.27972 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.016247 B = 0.002950 C = 0.002640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1722.959913 B = 9488.890570 C =10602.751932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.083 3.917 3 O -0.185 6.185 4 C 0.050 3.950 5 C -0.105 4.105 6 C -0.096 4.096 7 C -0.130 4.130 8 C -0.069 4.069 9 C -0.097 4.097 10 C -0.215 4.215 11 C 0.592 3.408 12 O -0.528 6.528 13 N -0.589 5.589 14 C 0.074 3.926 15 C 0.135 3.865 16 H 0.113 0.887 17 C 0.130 3.870 18 N -0.598 5.598 19 C -0.225 4.225 20 H 0.080 0.920 21 C -0.009 4.009 22 N -0.922 5.922 23 Si 0.918 3.082 24 H -0.288 1.288 25 H -0.290 1.290 26 H -0.281 1.281 27 C 0.129 3.871 28 C 0.066 3.934 29 H 0.060 0.940 30 O -0.563 6.563 31 H 0.093 0.907 32 H 0.086 0.914 33 H 0.098 0.902 34 H 0.133 0.867 35 H 0.136 0.864 36 H 0.132 0.868 37 H 0.129 0.871 38 H 0.054 0.946 39 H 0.085 0.915 40 H 0.068 0.932 41 H 0.032 0.968 42 H 0.035 0.965 43 H 0.254 0.746 44 H 0.112 0.888 45 H 0.025 0.975 46 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.090 20.497 -5.020 21.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.033 3.967 3 O -0.086 6.086 4 C 0.004 3.996 5 C -0.123 4.123 6 C -0.114 4.114 7 C -0.148 4.148 8 C -0.087 4.087 9 C -0.098 4.098 10 C -0.219 4.219 11 C 0.379 3.621 12 O -0.404 6.404 13 N -0.321 5.321 14 C -0.069 4.069 15 C 0.032 3.968 16 H 0.131 0.869 17 C 0.003 3.997 18 N -0.326 5.326 19 C -0.353 4.353 20 H 0.098 0.902 21 C -0.205 4.205 22 N -0.570 5.570 23 Si 0.748 3.252 24 H -0.215 1.215 25 H -0.216 1.216 26 H -0.206 1.206 27 C 0.003 3.997 28 C 0.005 3.995 29 H 0.077 0.923 30 O -0.367 6.367 31 H 0.111 0.889 32 H 0.105 0.895 33 H 0.117 0.883 34 H 0.150 0.850 35 H 0.154 0.846 36 H 0.150 0.850 37 H 0.147 0.853 38 H 0.073 0.927 39 H 0.104 0.896 40 H 0.087 0.913 41 H 0.050 0.950 42 H 0.052 0.948 43 H 0.064 0.936 44 H 0.129 0.871 45 H 0.043 0.957 46 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 6.310 20.355 -5.871 22.104 hybrid contribution -0.040 -0.866 1.076 1.382 sum 6.269 19.489 -4.795 21.027 Atomic orbital electron populations 1.20591 0.83760 1.05212 1.04594 1.22551 0.93830 0.82424 0.97855 1.83781 1.15210 1.33686 1.75928 1.19503 0.82919 0.93177 1.04050 1.19924 0.88022 0.99655 1.04703 1.20920 0.96358 0.94758 0.99376 1.21067 0.98322 0.93690 1.01708 1.20585 0.89981 1.00464 0.97711 1.19475 0.92606 0.92641 1.05083 1.20597 0.92238 0.94052 1.15045 1.17131 0.77004 0.84289 0.83694 1.90818 1.51257 1.67139 1.31215 1.47727 1.65848 1.12764 1.05751 1.21809 1.01075 0.97668 0.86319 1.22201 0.92977 0.79458 1.02140 0.86946 1.21556 0.93283 0.91399 0.93466 1.44266 1.01609 1.38451 1.48286 1.19086 0.92704 1.08608 1.14911 0.90185 1.24808 0.95473 0.99691 1.00485 1.69753 1.00584 1.40738 1.45963 0.86027 0.77691 0.80745 0.80751 1.21505 1.21568 1.20630 1.22554 0.88116 0.88441 1.00583 1.23718 0.85704 0.99649 0.90457 0.92254 1.86447 1.16748 1.94648 1.38899 0.88863 0.89524 0.88307 0.84954 0.84648 0.85026 0.85305 0.92723 0.89649 0.91325 0.94963 0.94750 0.93561 0.87064 0.95683 0.77930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.82 10.20 36.01 0.37 -0.45 16 2 C 0.08 1.04 7.30 -35.09 -0.26 0.79 16 3 O -0.18 -2.30 10.53 5.32 0.06 -2.24 16 4 C 0.05 0.61 7.39 -38.56 -0.28 0.33 16 5 C -0.10 -0.98 10.06 -39.46 -0.40 -1.38 16 6 C -0.10 -0.79 10.01 -39.56 -0.40 -1.18 16 7 C -0.13 -1.21 10.04 -39.56 -0.40 -1.61 16 8 C -0.07 -0.84 10.09 -39.40 -0.40 -1.23 16 9 C -0.10 -1.31 6.14 -104.98 -0.64 -1.96 16 10 C -0.21 -3.15 4.25 -103.25 -0.44 -3.59 16 11 C 0.59 10.25 7.06 -12.68 -0.09 10.16 16 12 O -0.53 -11.10 16.48 5.23 0.09 -11.01 16 13 N -0.59 -9.71 2.89 -173.23 -0.50 -10.21 16 14 C 0.07 1.00 9.12 59.85 0.55 1.54 16 15 C 0.14 2.62 3.10 -66.09 -0.20 2.42 16 16 H 0.11 2.45 6.99 -51.93 -0.36 2.09 16 17 C 0.13 2.71 6.80 -3.06 -0.02 2.69 16 18 N -0.60 -14.92 3.39 -170.08 -0.58 -15.50 16 19 C -0.23 -6.08 10.27 -15.06 -0.15 -6.23 16 20 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 21 C -0.01 -0.24 5.49 -17.43 -0.10 -0.34 16 22 N -0.92 -25.96 10.09 55.49 0.56 -25.40 16 23 Si 0.92 21.47 29.55 -169.99 -5.02 16.44 16 24 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 25 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 26 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 27 C 0.13 3.05 5.62 -2.53 -0.01 3.04 16 28 C 0.07 1.26 4.00 -24.58 -0.10 1.16 16 29 H 0.06 1.08 7.29 -51.93 -0.38 0.70 16 30 O -0.56 -10.14 13.47 -35.23 -0.47 -10.61 16 31 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.10 1.08 7.87 -51.93 -0.41 0.68 16 34 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 35 H 0.14 0.69 8.06 -52.49 -0.42 0.27 16 36 H 0.13 0.91 8.06 -52.48 -0.42 0.49 16 37 H 0.13 1.55 8.06 -52.49 -0.42 1.13 16 38 H 0.05 0.66 8.08 -51.93 -0.42 0.24 16 39 H 0.08 1.20 6.08 -51.93 -0.32 0.88 16 40 H 0.07 0.84 6.68 -51.93 -0.35 0.50 16 41 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.03 0.68 5.94 -51.93 -0.31 0.37 16 43 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 44 H 0.11 2.88 5.87 -51.93 -0.30 2.58 16 45 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 46 H 0.37 5.14 9.12 45.56 0.42 5.55 16 LS Contribution 379.52 15.07 5.72 5.72 Total: -1.00 -33.67 379.52 -8.49 -42.16 By element: Atomic # 1 Polarization: 11.86 SS G_CDS: -5.36 Total: 6.50 kcal Atomic # 6 Polarization: 7.13 SS G_CDS: -2.98 Total: 4.15 kcal Atomic # 7 Polarization: -50.59 SS G_CDS: -0.52 Total: -51.11 kcal Atomic # 8 Polarization: -23.53 SS G_CDS: -0.33 Total: -23.86 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -33.67 -8.49 -42.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047392639.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.736 kcal (2) G-P(sol) polarization free energy of solvation -33.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds