Wall clock time and date at job start Wed Apr 1 2020 02:12:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86796 * 120.00225 * 2 1 4 4 H 1.48503 * 109.47286 * 240.00399 * 3 2 1 5 5 H 1.48503 * 109.47292 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47059 * 120.00093 * 3 2 1 7 7 C 1.38816 * 119.99950 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00236 * 186.21896 * 7 2 1 9 9 N 1.36938 * 119.99919 * 6.22520 * 7 2 1 10 10 C 1.47159 * 120.98219 * 34.55222 * 9 7 2 11 11 C 1.53291 * 108.38149 * 129.48939 * 10 9 7 12 12 O 1.42968 * 109.22318 * 52.30574 * 11 10 9 13 13 C 1.42964 * 114.16470 * 297.41420 * 12 11 10 14 14 C 1.47148 * 120.98109 * 214.58275 * 9 7 2 15 15 H 1.09004 * 109.68147 * 110.75244 * 14 9 7 16 16 C 1.52995 * 109.68110 * 350.23332 * 14 9 7 17 17 N 1.46499 * 109.47330 * 60.56083 * 16 14 9 18 18 C 1.34773 * 119.99822 * 180.02562 * 17 16 14 19 19 O 1.21634 * 120.00443 * 354.74358 * 18 17 16 20 20 C 1.47165 * 119.99920 * 174.74811 * 18 17 16 21 21 C 1.38411 * 126.88416 * 5.20451 * 20 18 17 22 22 C 1.39665 * 105.36100 * 179.91858 * 21 20 18 23 23 N 1.30865 * 107.86064 * 0.35397 * 22 21 20 24 24 N 1.28437 * 110.92996 * 359.77395 * 23 22 21 25 25 C 1.46501 * 125.19507 * 180.02562 * 24 23 22 26 26 C 1.52999 * 109.47171 * 274.84312 * 25 24 23 27 27 F 1.39894 * 109.47294 * 174.99606 * 26 25 24 28 28 F 1.39901 * 109.47017 * 294.99756 * 26 25 24 29 29 H 0.97003 * 119.99640 * 359.97438 * 1 2 3 30 30 H 1.08998 * 109.68369 * 249.21337 * 10 9 7 31 31 H 1.08999 * 109.68066 * 9.73102 * 10 9 7 32 32 H 1.09002 * 109.51414 * 172.22828 * 11 10 9 33 33 H 1.09001 * 109.51654 * 292.33184 * 11 10 9 34 34 H 1.08994 * 109.51459 * 302.66047 * 13 12 11 35 35 H 1.08998 * 109.51099 * 182.50440 * 13 12 11 36 36 H 1.09006 * 109.46883 * 180.56273 * 16 14 9 37 37 H 1.09002 * 109.46854 * 300.55624 * 16 14 9 38 38 H 0.96993 * 119.99760 * 359.97438 * 17 16 14 39 39 H 1.08005 * 127.31432 * 0.03766 * 21 20 18 40 40 H 1.07999 * 126.07285 * 180.09561 * 22 21 20 41 41 H 1.09008 * 109.46800 * 34.84199 * 25 24 23 42 42 H 1.08997 * 109.47552 * 154.83872 * 25 24 23 43 43 H 1.09002 * 109.47027 * 54.99737 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6964 -1.2126 5 1 1.2853 2.7465 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0855 -1.2050 0.1008 9 7 1.3316 -2.3845 -0.1297 10 6 0.1262 -2.4784 -0.9685 11 6 0.2870 -3.6742 -1.9140 12 8 0.6214 -4.8360 -1.1508 13 6 1.8658 -4.7400 -0.4535 14 6 1.7858 -3.5986 0.5668 15 1 1.0769 -3.8576 1.3533 16 6 3.1673 -3.3558 1.1778 17 7 3.0882 -2.2564 2.1428 18 6 4.1920 -1.8636 2.8088 19 8 5.2317 -2.4819 2.6810 20 6 4.1395 -0.6867 3.6908 21 6 3.0188 0.0567 4.0181 22 6 3.4771 1.0581 4.8772 23 7 4.7682 0.9019 5.0230 24 7 5.1879 -0.1053 4.3456 25 6 6.5787 -0.5617 4.2850 26 6 7.3276 0.2264 3.2084 27 9 8.6808 -0.1278 3.2278 28 9 6.7861 -0.0691 1.9528 29 1 -0.4850 0.8401 0.0004 30 1 -0.7501 -2.6249 -0.3370 31 1 0.0111 -1.5633 -1.5494 32 1 -0.6483 -3.8455 -2.4468 33 1 1.0818 -3.4674 -2.6307 34 1 2.6668 -4.5373 -1.1643 35 1 2.0662 -5.6779 0.0644 36 1 3.5047 -4.2602 1.6841 37 1 3.8731 -3.0965 0.3886 38 1 2.2415 -1.8107 2.3018 39 1 2.0051 -0.1046 3.6823 40 1 2.8739 1.8274 5.3361 41 1 7.0564 -0.4007 5.2515 42 1 6.6024 -1.6236 4.0405 43 1 7.2286 1.2940 3.4047 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050920106.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:12:17 Heat of formation + Delta-G solvation = -67.541949 kcal Electronic energy + Delta-G solvation = -32105.920401 eV Core-core repulsion = 27439.112299 eV Total energy + Delta-G solvation = -4666.808102 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.145 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.06347 -47.05532 -42.43999 -39.23405 -38.26120 -35.46223 -34.20648 -33.52944 -31.88397 -30.79402 -30.20096 -28.98750 -27.26081 -25.75211 -23.92664 -23.49338 -22.81140 -21.84733 -21.01709 -19.94804 -19.64084 -18.21278 -17.54119 -17.42116 -16.84939 -16.43229 -15.97501 -15.92308 -15.49132 -15.05715 -14.87470 -14.62487 -14.30403 -14.14903 -14.00187 -13.86572 -13.73312 -13.59254 -13.40518 -13.31529 -13.04018 -12.73073 -12.69433 -12.26707 -11.94625 -11.60835 -11.35462 -11.04962 -10.92849 -10.82019 -10.78545 -10.46102 -10.29446 -10.14211 -9.78281 -9.67137 -9.19672 -9.03019 -8.94793 -8.73098 -8.36717 -6.73271 -5.96006 -3.50039 1.38124 2.20310 2.68536 3.28439 3.33506 3.38676 3.43736 3.51434 3.73401 4.01282 4.21673 4.30860 4.49464 4.57880 4.76351 4.90798 5.10720 5.15423 5.20360 5.23179 5.40554 5.52311 5.66671 5.72164 5.80971 5.94022 5.98337 6.02594 6.11651 6.17051 6.29846 6.48170 6.57034 6.67583 6.69305 6.92010 7.03380 7.45855 7.66026 7.82843 7.93389 8.10649 8.26438 8.57162 9.01279 9.59879 10.20977 11.09794 Molecular weight = 344.14amu Principal moments of inertia in cm(-1) A = 0.012418 B = 0.004349 C = 0.003830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2254.175816 B = 6436.074138 C = 7308.373202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.018 3.982 3 Si 0.891 3.109 4 H -0.284 1.284 5 H -0.289 1.289 6 H -0.275 1.275 7 C -0.259 4.259 8 H 0.069 0.931 9 N -0.591 5.591 10 C 0.145 3.855 11 C 0.034 3.966 12 O -0.392 6.392 13 C 0.056 3.944 14 C 0.125 3.875 15 H 0.043 0.957 16 C 0.138 3.862 17 N -0.673 5.673 18 C 0.583 3.417 19 O -0.560 6.560 20 C -0.015 4.015 21 C -0.174 4.174 22 C 0.007 3.993 23 N -0.289 5.289 24 N -0.272 5.272 25 C 0.070 3.930 26 C 0.255 3.745 27 F -0.196 7.196 28 F -0.187 7.187 29 H 0.257 0.743 30 H 0.030 0.970 31 H 0.091 0.909 32 H 0.079 0.921 33 H 0.040 0.960 34 H 0.047 0.953 35 H 0.083 0.917 36 H 0.063 0.937 37 H 0.070 0.930 38 H 0.419 0.581 39 H 0.168 0.832 40 H 0.188 0.812 41 H 0.125 0.875 42 H 0.145 0.855 43 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.687 -1.535 7.348 10.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.182 4.182 3 Si 0.720 3.280 4 H -0.210 1.210 5 H -0.215 1.215 6 H -0.200 1.200 7 C -0.389 4.389 8 H 0.087 0.913 9 N -0.317 5.317 10 C 0.020 3.980 11 C -0.044 4.044 12 O -0.311 6.311 13 C -0.023 4.023 14 C 0.017 3.983 15 H 0.061 0.939 16 C 0.014 3.986 17 N -0.323 5.323 18 C 0.367 3.633 19 O -0.440 6.440 20 C -0.143 4.143 21 C -0.203 4.203 22 C -0.171 4.171 23 N -0.120 5.120 24 N -0.060 5.060 25 C -0.052 4.052 26 C 0.200 3.800 27 F -0.177 7.177 28 F -0.168 7.168 29 H 0.067 0.933 30 H 0.048 0.952 31 H 0.109 0.891 32 H 0.097 0.903 33 H 0.059 0.941 34 H 0.065 0.935 35 H 0.101 0.899 36 H 0.081 0.919 37 H 0.088 0.912 38 H 0.258 0.742 39 H 0.185 0.815 40 H 0.205 0.795 41 H 0.143 0.857 42 H 0.162 0.838 43 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 8.248 -1.595 7.729 11.416 hybrid contribution -0.513 1.257 -0.556 1.467 sum 7.735 -0.338 7.173 10.554 Atomic orbital electron populations 1.69946 1.05175 1.25904 1.52970 1.25193 0.95271 0.98085 0.99675 0.86543 0.79144 0.83510 0.78831 1.21014 1.21489 1.20035 1.19101 0.90491 0.82827 1.46432 0.91317 1.44043 1.30487 1.05235 1.51910 1.21409 0.88751 0.95709 0.92159 1.23365 0.99125 0.87684 0.94221 1.87807 1.39039 1.39169 1.65036 1.22855 0.86484 0.98309 0.94640 1.21452 0.93376 0.89669 0.93760 0.93948 1.21236 0.97885 0.88311 0.91164 1.45700 1.11506 1.35534 1.39581 1.16828 0.84461 0.82297 0.79683 1.90700 1.30485 1.56525 1.66332 1.21547 0.88581 1.00704 1.03422 1.22447 0.99404 0.96803 1.01615 1.23580 0.90396 1.01401 1.01716 1.73122 1.15342 1.06217 1.17328 1.45113 1.06924 1.20579 1.33350 1.23109 0.77696 1.03294 1.01118 1.22072 0.75680 1.00437 0.81770 1.92999 1.34011 1.94107 1.96603 1.93104 1.85403 1.95053 1.43244 0.93279 0.95171 0.89100 0.90253 0.94131 0.93482 0.89879 0.91857 0.91166 0.74212 0.81471 0.79513 0.85720 0.83758 0.86895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.18 11.14 55.49 0.62 -22.56 16 2 C 0.02 0.45 5.14 -17.43 -0.09 0.36 16 3 Si 0.89 20.47 29.56 -169.99 -5.02 15.44 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 7 C -0.26 -6.18 6.90 -15.06 -0.10 -6.28 16 8 H 0.07 1.70 5.98 -52.49 -0.31 1.39 16 9 N -0.59 -13.02 3.02 -164.30 -0.50 -13.52 16 10 C 0.15 3.17 5.35 -3.53 -0.02 3.16 16 11 C 0.03 0.63 6.98 37.31 0.26 0.89 16 12 O -0.39 -7.38 10.74 -35.23 -0.38 -7.76 16 13 C 0.06 0.95 6.29 37.31 0.23 1.19 16 14 C 0.12 2.31 3.21 -67.42 -0.22 2.10 16 15 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 16 C 0.14 2.42 4.46 -4.04 -0.02 2.41 16 17 N -0.67 -12.21 3.82 -61.47 -0.24 -12.45 16 18 C 0.58 10.68 7.79 -12.64 -0.10 10.58 16 19 O -0.56 -10.90 14.45 5.25 0.08 -10.82 16 20 C -0.02 -0.26 6.96 -82.05 -0.57 -0.83 16 21 C -0.17 -2.75 10.50 -38.98 -0.41 -3.16 16 22 C 0.01 0.09 12.03 -17.43 -0.21 -0.12 16 23 N -0.29 -4.30 11.90 30.59 0.36 -3.94 16 24 N -0.27 -4.16 3.33 -57.13 -0.19 -4.35 16 25 C 0.07 0.89 6.18 -4.04 -0.02 0.86 16 26 C 0.26 3.35 5.55 37.16 0.21 3.55 16 27 F -0.20 -2.50 17.34 2.25 0.04 -2.46 16 28 F -0.19 -3.27 17.18 2.25 0.04 -3.23 16 29 H 0.26 6.57 8.31 -40.82 -0.34 6.23 16 30 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.09 2.20 6.45 -51.93 -0.33 1.87 16 32 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 33 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 36 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.07 1.35 7.55 -51.93 -0.39 0.95 16 38 H 0.42 7.91 6.34 -40.82 -0.26 7.65 16 39 H 0.17 2.54 7.58 -52.48 -0.40 2.14 16 40 H 0.19 1.98 8.06 -52.49 -0.42 1.55 16 41 H 0.12 1.15 8.14 -51.92 -0.42 0.73 16 42 H 0.14 1.99 5.95 -51.93 -0.31 1.68 16 43 H 0.11 1.26 8.14 -51.93 -0.42 0.84 16 LS Contribution 360.66 15.07 5.44 5.44 Total: -1.00 -29.27 360.66 -6.18 -35.45 By element: Atomic # 1 Polarization: 15.40 SS G_CDS: -5.37 Total: 10.03 kcal Atomic # 6 Polarization: 15.77 SS G_CDS: -1.06 Total: 14.71 kcal Atomic # 7 Polarization: -56.87 SS G_CDS: 0.06 Total: -56.81 kcal Atomic # 8 Polarization: -18.28 SS G_CDS: -0.30 Total: -18.58 kcal Atomic # 9 Polarization: -5.77 SS G_CDS: 0.08 Total: -5.69 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -29.27 -6.18 -35.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050920106.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.091 kcal (2) G-P(sol) polarization free energy of solvation -29.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds