Wall clock time and date at job start Wed Apr 1 2020 03:13:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35368 * 126.38663 * 2 1 4 4 C 1.41504 * 105.50067 * 180.13995 * 3 2 1 5 5 C 1.47716 * 126.51593 * 179.84284 * 4 3 2 6 6 O 1.21570 * 120.00041 * 359.71237 * 5 4 3 7 7 N 1.34778 * 119.99818 * 179.70809 * 5 4 3 8 8 C 1.46499 * 119.99859 * 179.97438 * 7 5 4 9 9 C 1.53000 * 109.46893 * 180.02562 * 8 7 5 10 10 H 1.09001 * 109.67817 * 300.77256 * 9 8 7 11 11 C 1.53299 * 109.67780 * 180.25705 * 9 8 7 12 12 O 1.42967 * 109.21870 * 187.97565 * 11 9 8 13 13 C 1.42955 * 114.16865 * 62.58058 * 12 11 9 14 14 C 1.53298 * 109.22631 * 297.41876 * 13 12 11 15 15 N 1.47151 * 109.68284 * 61.29571 * 9 8 7 16 16 C 1.36936 * 120.97787 * 350.22733 * 15 9 8 17 17 H 1.07993 * 120.00434 * 31.06604 * 16 15 9 18 18 C 1.38819 * 119.99735 * 211.05999 * 16 15 9 19 19 N 1.31617 * 120.00205 * 10.78467 * 18 16 15 20 20 Si 1.86799 * 119.99852 * 190.77885 * 18 16 15 21 21 H 1.48495 * 109.47184 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.46960 * 120.00409 * 20 18 16 23 23 H 1.48499 * 109.47192 * 239.99901 * 20 18 16 24 24 N 1.31805 * 106.96441 * 359.57697 * 4 3 2 25 25 N 1.28468 * 110.07622 * 0.26452 * 24 4 3 26 26 C 1.46498 * 124.88636 * 179.97438 * 25 24 4 27 27 F 1.39897 * 109.46848 * 120.02759 * 26 25 24 28 28 F 1.39901 * 109.47186 * 240.02393 * 26 25 24 29 29 H 1.09004 * 109.47099 * 270.33207 * 1 2 3 30 30 H 1.08998 * 109.46635 * 30.32394 * 1 2 3 31 31 H 1.09001 * 109.47091 * 150.32764 * 1 2 3 32 32 H 1.07996 * 127.25337 * 359.97438 * 3 2 1 33 33 H 0.97003 * 119.99939 * 0.02562 * 7 5 4 34 34 H 1.08996 * 109.46942 * 60.00376 * 8 7 5 35 35 H 1.08996 * 109.47353 * 300.00358 * 8 7 5 36 36 H 1.08994 * 109.51304 * 307.89522 * 11 9 8 37 37 H 1.08995 * 109.51264 * 68.00282 * 11 9 8 38 38 H 1.09006 * 109.51550 * 57.34403 * 13 12 11 39 39 H 1.09005 * 109.51470 * 177.49176 * 13 12 11 40 40 H 1.09000 * 109.68658 * 172.02637 * 14 13 12 41 41 H 1.09000 * 109.67900 * 292.58356 * 14 13 12 42 42 H 0.96998 * 120.00306 * 180.02562 * 19 18 16 43 43 H 1.08994 * 109.47391 * 0.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3100 1.0898 0.0000 4 6 3.6321 0.5853 -0.0033 5 6 4.8765 1.3811 -0.0079 6 8 4.8214 2.5955 -0.0144 7 7 6.0731 0.7608 -0.0048 8 6 7.3073 1.5500 -0.0098 9 6 8.5140 0.6095 -0.0055 10 1 8.4813 -0.0255 0.8798 11 6 9.8085 1.4307 -0.0043 12 8 10.9225 0.5535 -0.1876 13 6 10.9209 -0.1413 -1.4370 14 6 9.6834 -1.0430 -1.5116 15 7 8.4951 -0.2266 -1.2163 16 6 7.4041 -0.2442 -2.0436 17 1 6.7900 0.6381 -2.1465 18 6 7.0875 -1.3964 -2.7504 19 7 7.6982 -2.5284 -2.4712 20 14 5.7947 -1.3401 -4.0975 21 1 5.2618 0.0409 -4.2148 22 1 6.4069 -1.7453 -5.3883 23 1 4.6880 -2.2713 -3.7607 24 7 3.5420 -0.7297 0.0042 25 7 2.3080 -1.0871 0.0063 26 6 1.8376 -2.4745 0.0138 27 9 1.0629 -2.6980 1.1570 28 9 1.0636 -2.7106 -1.1275 29 1 -0.3633 0.0060 1.0277 30 1 -0.3632 0.8871 -0.5189 31 1 -0.3633 -0.8929 -0.5087 32 1 2.0058 2.1260 -0.0004 33 1 6.1170 -0.2082 0.0001 34 1 7.3369 2.1837 0.8765 35 1 7.3362 2.1735 -0.9034 36 1 9.7797 2.1570 -0.8165 37 1 9.9078 1.9524 0.9475 38 1 10.8961 0.5794 -2.2544 39 1 11.8210 -0.7512 -1.5156 40 1 9.5980 -1.4673 -2.5120 41 1 9.7687 -1.8448 -0.7782 42 1 7.4773 -3.3334 -2.9652 43 1 2.6941 -3.1486 0.0177 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050940138.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:13:19 Heat of formation + Delta-G solvation = -59.938598 kcal Electronic energy + Delta-G solvation = -31516.285776 eV Core-core repulsion = 26849.807379 eV Total energy + Delta-G solvation = -4666.478396 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.145 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.66483 -47.73006 -42.66031 -39.17037 -38.21205 -35.33038 -33.62928 -33.03276 -32.79935 -31.46854 -30.41847 -27.35781 -27.34351 -26.78585 -25.28991 -23.45460 -23.03996 -21.57063 -21.20534 -19.79600 -19.44671 -18.20723 -18.05714 -17.77320 -17.07704 -16.24782 -15.95063 -15.76682 -15.57914 -14.93499 -14.63365 -14.52605 -14.48777 -14.27115 -14.05965 -13.91639 -13.77645 -13.70213 -13.47498 -13.37314 -13.10612 -12.98692 -12.74958 -12.52746 -12.02615 -11.89057 -11.56777 -11.05610 -10.90143 -10.88018 -10.72725 -10.41043 -10.23602 -10.05044 -9.78956 -9.63886 -9.49332 -9.01527 -8.99113 -8.67407 -8.30149 -6.72640 -5.90367 -3.39365 1.50059 1.65413 2.09215 3.22086 3.26959 3.36129 3.40607 3.61159 3.78993 3.88275 4.31538 4.34818 4.36789 4.53197 4.71658 4.86495 5.14552 5.26402 5.28435 5.42778 5.52431 5.58047 5.58870 5.73106 5.83354 5.85922 6.01611 6.06591 6.15597 6.20682 6.32843 6.34237 6.44665 6.52359 6.74840 7.03239 7.07435 7.49148 7.69714 7.71670 7.86897 8.21021 8.29578 8.72623 9.06433 9.66685 10.25296 11.16316 Molecular weight = 344.14amu Principal moments of inertia in cm(-1) A = 0.012926 B = 0.003928 C = 0.003420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2165.682777 B = 7127.435989 C = 8185.444599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.019 3.981 3 C -0.172 4.172 4 C 0.023 3.977 5 C 0.595 3.405 6 O -0.551 6.551 7 N -0.677 5.677 8 C 0.134 3.866 9 C 0.124 3.876 10 H 0.042 0.958 11 C 0.056 3.944 12 O -0.392 6.392 13 C 0.035 3.965 14 C 0.144 3.856 15 N -0.591 5.591 16 C -0.253 4.253 17 H 0.073 0.927 18 C 0.014 3.986 19 N -0.899 5.899 20 Si 0.893 3.107 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.290 1.290 24 N -0.236 5.236 25 N -0.347 5.347 26 C 0.495 3.505 27 F -0.177 7.177 28 F -0.175 7.175 29 H 0.081 0.919 30 H 0.089 0.911 31 H 0.071 0.929 32 H 0.167 0.833 33 H 0.422 0.578 34 H 0.063 0.937 35 H 0.071 0.929 36 H 0.047 0.953 37 H 0.083 0.917 38 H 0.041 0.959 39 H 0.079 0.921 40 H 0.092 0.908 41 H 0.029 0.971 42 H 0.254 0.746 43 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.879 1.248 5.950 11.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.101 4.101 3 C -0.200 4.200 4 C -0.141 4.141 5 C 0.378 3.622 6 O -0.428 6.428 7 N -0.328 5.328 8 C 0.010 3.990 9 C 0.017 3.983 10 H 0.060 0.940 11 C -0.023 4.023 12 O -0.311 6.311 13 C -0.043 4.043 14 C 0.019 3.981 15 N -0.317 5.317 16 C -0.382 4.382 17 H 0.091 0.909 18 C -0.185 4.185 19 N -0.542 5.542 20 Si 0.723 3.277 21 H -0.202 1.202 22 H -0.215 1.215 23 H -0.217 1.217 24 N -0.067 5.067 25 N -0.145 5.145 26 C 0.362 3.638 27 F -0.158 7.158 28 F -0.157 7.157 29 H 0.100 0.900 30 H 0.108 0.892 31 H 0.090 0.910 32 H 0.185 0.815 33 H 0.261 0.739 34 H 0.081 0.919 35 H 0.089 0.911 36 H 0.066 0.934 37 H 0.101 0.899 38 H 0.059 0.941 39 H 0.097 0.903 40 H 0.111 0.889 41 H 0.047 0.953 42 H 0.064 0.936 43 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -9.223 0.761 6.004 11.032 hybrid contribution -1.541 -0.024 -1.131 1.911 sum -10.764 0.737 4.873 11.839 Atomic orbital electron populations 1.20433 0.86371 1.04263 1.03541 1.21531 0.95672 0.86651 1.06279 1.21593 0.90378 0.99544 1.08456 1.22242 0.95716 0.89207 1.06965 1.16778 0.81795 0.86176 0.77475 1.90745 1.86902 1.12759 1.52400 1.45907 1.04102 1.12190 1.70610 1.21249 0.82860 0.93587 1.01298 1.21436 0.92274 0.92673 0.91886 0.94036 1.22858 0.87109 0.91751 1.00549 1.87800 1.44781 1.59882 1.38626 1.23356 1.00381 0.95569 0.85009 1.21416 0.83191 0.91190 1.02309 1.44103 1.14502 1.50747 1.22350 1.19238 1.04243 0.95660 1.19044 0.90925 1.25073 0.98186 0.94973 1.00298 1.69985 1.43986 0.98856 1.41423 0.86353 0.81494 0.77779 0.82084 1.20195 1.21503 1.21658 1.73696 0.99259 1.15555 1.18231 1.46455 1.04654 1.06562 1.56786 1.21187 0.88362 0.82202 0.72100 1.93128 1.78091 1.93713 1.50866 1.93131 1.77997 1.93481 1.51077 0.89998 0.89181 0.91021 0.81523 0.73910 0.91913 0.91109 0.93438 0.89851 0.94101 0.90253 0.88945 0.95277 0.93597 0.80936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.81 9.96 36.00 0.36 -0.45 16 2 C 0.02 0.26 6.79 -82.21 -0.56 -0.30 16 3 C -0.17 -2.62 10.73 -39.36 -0.42 -3.05 16 4 C 0.02 0.42 7.13 -82.76 -0.59 -0.17 16 5 C 0.59 11.78 7.83 -12.39 -0.10 11.68 16 6 O -0.55 -11.76 16.93 5.30 0.09 -11.67 16 7 N -0.68 -13.34 3.80 -61.29 -0.23 -13.57 16 8 C 0.13 2.49 4.44 -4.04 -0.02 2.47 16 9 C 0.12 2.43 3.20 -67.42 -0.22 2.21 16 10 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 11 C 0.06 0.99 6.29 37.31 0.23 1.22 16 12 O -0.39 -7.56 10.74 -35.23 -0.38 -7.94 16 13 C 0.03 0.66 6.98 37.31 0.26 0.92 16 14 C 0.14 3.26 5.38 -3.52 -0.02 3.24 16 15 N -0.59 -13.60 3.03 -164.29 -0.50 -14.10 16 16 C -0.25 -6.30 7.11 -15.06 -0.11 -6.41 16 17 H 0.07 1.87 5.81 -52.49 -0.30 1.56 16 18 C 0.01 0.37 5.06 -17.43 -0.09 0.28 16 19 N -0.90 -24.18 11.13 55.49 0.62 -23.56 16 20 Si 0.89 21.37 29.57 -169.99 -5.03 16.35 16 21 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 22 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 23 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 24 N -0.24 -4.15 11.67 33.42 0.39 -3.76 16 25 N -0.35 -5.09 3.56 -62.36 -0.22 -5.31 16 26 C 0.50 5.64 5.86 59.85 0.35 5.99 16 27 F -0.18 -1.87 17.30 2.25 0.04 -1.83 16 28 F -0.18 -2.08 16.42 2.25 0.04 -2.04 16 29 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.07 0.64 6.90 -51.93 -0.36 0.28 16 32 H 0.17 2.22 8.06 -52.49 -0.42 1.79 16 33 H 0.42 8.88 7.10 -40.82 -0.29 8.59 16 34 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.07 1.41 7.53 -51.93 -0.39 1.02 16 36 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 38 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 39 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 40 H 0.09 2.30 6.33 -51.93 -0.33 1.97 16 41 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.25 6.70 8.31 -40.82 -0.34 6.36 16 43 H 0.17 1.60 8.14 -51.93 -0.42 1.18 16 LS Contribution 363.66 15.07 5.48 5.48 Total: -1.00 -30.71 363.66 -6.07 -36.78 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: -5.46 Total: 7.54 kcal Atomic # 6 Polarization: 18.56 SS G_CDS: -0.91 Total: 17.65 kcal Atomic # 7 Polarization: -60.36 SS G_CDS: 0.05 Total: -60.31 kcal Atomic # 8 Polarization: -19.32 SS G_CDS: -0.29 Total: -19.61 kcal Atomic # 9 Polarization: -3.95 SS G_CDS: 0.08 Total: -3.87 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.03 Total: 16.35 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -30.71 -6.07 -36.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050940138.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.158 kcal (2) G-P(sol) polarization free energy of solvation -30.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds