Wall clock time and date at job start Wed Apr 1 2020 03:13:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35368 * 126.38663 * 2 1 4 4 C 1.41504 * 105.50067 * 180.13995 * 3 2 1 5 5 C 1.47716 * 126.51593 * 179.84284 * 4 3 2 6 6 O 1.21570 * 120.00041 * 359.71237 * 5 4 3 7 7 N 1.34778 * 119.99818 * 179.70809 * 5 4 3 8 8 C 1.46499 * 119.99859 * 179.97438 * 7 5 4 9 9 C 1.53000 * 109.46893 * 180.02562 * 8 7 5 10 10 H 1.09001 * 109.67817 * 300.77256 * 9 8 7 11 11 C 1.53299 * 109.67780 * 180.25705 * 9 8 7 12 12 O 1.42967 * 109.21870 * 187.97565 * 11 9 8 13 13 C 1.42955 * 114.16865 * 62.58058 * 12 11 9 14 14 C 1.53298 * 109.22631 * 297.41876 * 13 12 11 15 15 N 1.47151 * 109.68284 * 61.29571 * 9 8 7 16 16 C 1.36936 * 120.97787 * 350.22733 * 15 9 8 17 17 H 1.07993 * 120.00434 * 31.06604 * 16 15 9 18 18 C 1.38819 * 119.99735 * 211.05999 * 16 15 9 19 19 N 1.31617 * 120.00205 * 10.78467 * 18 16 15 20 20 Si 1.86799 * 119.99852 * 190.77885 * 18 16 15 21 21 H 1.48495 * 109.47184 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.46960 * 120.00409 * 20 18 16 23 23 H 1.48499 * 109.47192 * 239.99901 * 20 18 16 24 24 N 1.31805 * 106.96441 * 359.57697 * 4 3 2 25 25 N 1.28468 * 110.07622 * 0.26452 * 24 4 3 26 26 C 1.46498 * 124.88636 * 179.97438 * 25 24 4 27 27 F 1.39897 * 109.46848 * 120.02759 * 26 25 24 28 28 F 1.39901 * 109.47186 * 240.02393 * 26 25 24 29 29 H 1.09004 * 109.47099 * 270.33207 * 1 2 3 30 30 H 1.08998 * 109.46635 * 30.32394 * 1 2 3 31 31 H 1.09001 * 109.47091 * 150.32764 * 1 2 3 32 32 H 1.07996 * 127.25337 * 359.97438 * 3 2 1 33 33 H 0.97003 * 119.99939 * 0.02562 * 7 5 4 34 34 H 1.08996 * 109.46942 * 60.00376 * 8 7 5 35 35 H 1.08996 * 109.47353 * 300.00358 * 8 7 5 36 36 H 1.08994 * 109.51304 * 307.89522 * 11 9 8 37 37 H 1.08995 * 109.51264 * 68.00282 * 11 9 8 38 38 H 1.09006 * 109.51550 * 57.34403 * 13 12 11 39 39 H 1.09005 * 109.51470 * 177.49176 * 13 12 11 40 40 H 1.09000 * 109.68658 * 172.02637 * 14 13 12 41 41 H 1.09000 * 109.67900 * 292.58356 * 14 13 12 42 42 H 0.96998 * 120.00306 * 180.02562 * 19 18 16 43 43 H 1.08994 * 109.47391 * 0.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3100 1.0898 0.0000 4 6 3.6321 0.5853 -0.0033 5 6 4.8765 1.3811 -0.0079 6 8 4.8214 2.5955 -0.0144 7 7 6.0731 0.7608 -0.0048 8 6 7.3073 1.5500 -0.0098 9 6 8.5140 0.6095 -0.0055 10 1 8.4813 -0.0255 0.8798 11 6 9.8085 1.4307 -0.0043 12 8 10.9225 0.5535 -0.1876 13 6 10.9209 -0.1413 -1.4370 14 6 9.6834 -1.0430 -1.5116 15 7 8.4951 -0.2266 -1.2163 16 6 7.4041 -0.2442 -2.0436 17 1 6.7900 0.6381 -2.1465 18 6 7.0875 -1.3964 -2.7504 19 7 7.6982 -2.5284 -2.4712 20 14 5.7947 -1.3401 -4.0975 21 1 5.2618 0.0409 -4.2148 22 1 6.4069 -1.7453 -5.3883 23 1 4.6880 -2.2713 -3.7607 24 7 3.5420 -0.7297 0.0042 25 7 2.3080 -1.0871 0.0063 26 6 1.8376 -2.4745 0.0138 27 9 1.0629 -2.6980 1.1570 28 9 1.0636 -2.7106 -1.1275 29 1 -0.3633 0.0060 1.0277 30 1 -0.3632 0.8871 -0.5189 31 1 -0.3633 -0.8929 -0.5087 32 1 2.0058 2.1260 -0.0004 33 1 6.1170 -0.2082 0.0001 34 1 7.3369 2.1837 0.8765 35 1 7.3362 2.1735 -0.9034 36 1 9.7797 2.1570 -0.8165 37 1 9.9078 1.9524 0.9475 38 1 10.8961 0.5794 -2.2544 39 1 11.8210 -0.7512 -1.5156 40 1 9.5980 -1.4673 -2.5120 41 1 9.7687 -1.8448 -0.7782 42 1 7.4773 -3.3334 -2.9652 43 1 2.6941 -3.1486 0.0177 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001050940138.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:13:18 Heat of formation + Delta-G solvation = -80.853143 kcal Electronic energy + Delta-G solvation = -31517.192698 eV Core-core repulsion = 26849.807379 eV Total energy + Delta-G solvation = -4667.385319 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.145 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -50.57666 -48.63505 -43.83616 -40.74084 -39.78386 -36.95678 -35.35274 -34.23818 -33.84381 -33.16494 -32.10431 -29.06137 -28.34105 -28.09837 -26.60085 -25.24064 -24.38098 -23.12762 -22.36006 -21.43111 -20.89554 -19.17385 -19.15219 -18.90337 -18.51341 -17.78456 -17.57292 -17.27424 -16.83507 -16.44642 -16.25961 -16.05553 -15.65657 -15.48121 -15.37903 -15.23899 -15.07093 -14.95809 -14.79012 -14.64659 -14.39661 -14.18427 -13.90758 -13.65705 -13.54553 -13.12672 -12.93890 -12.92786 -12.77619 -12.50841 -12.16333 -12.06067 -11.98767 -11.85670 -11.38913 -11.23267 -10.75843 -10.65969 -10.56333 -10.12419 -9.90925 -8.61607 -7.88275 -5.37598 0.24706 0.62743 0.89226 1.33378 1.39427 1.45909 2.15960 2.30658 2.34234 2.42634 2.95213 3.05314 3.28337 3.39300 3.41129 3.43621 3.53875 3.85458 4.02427 4.21627 4.29243 4.37563 4.42225 4.49579 4.60353 4.61016 4.65547 4.67811 4.75987 4.82568 4.87258 5.02030 5.09411 5.12705 5.31198 5.44112 5.48120 5.64431 5.69000 6.30917 6.36282 6.42122 6.69919 7.11210 7.16682 7.76446 8.32064 9.16429 Molecular weight = 344.14amu Principal moments of inertia in cm(-1) A = 0.012926 B = 0.003928 C = 0.003420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2165.682777 B = 7127.435989 C = 8185.444599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.031 3.969 3 C -0.187 4.187 4 C -0.006 4.006 5 C 0.594 3.406 6 O -0.572 6.572 7 N -0.681 5.681 8 C 0.138 3.862 9 C 0.125 3.875 10 H 0.037 0.963 11 C 0.059 3.941 12 O -0.397 6.397 13 C 0.047 3.953 14 C 0.150 3.850 15 N -0.605 5.605 16 C -0.236 4.236 17 H 0.065 0.935 18 C -0.024 4.024 19 N -0.922 5.922 20 Si 0.936 3.064 21 H -0.284 1.284 22 H -0.290 1.290 23 H -0.292 1.292 24 N -0.260 5.260 25 N -0.350 5.350 26 C 0.494 3.506 27 F -0.169 7.169 28 F -0.176 7.176 29 H 0.101 0.899 30 H 0.110 0.890 31 H 0.076 0.924 32 H 0.181 0.819 33 H 0.415 0.585 34 H 0.089 0.911 35 H 0.057 0.943 36 H 0.051 0.949 37 H 0.120 0.880 38 H 0.044 0.956 39 H 0.104 0.896 40 H 0.066 0.934 41 H 0.006 0.994 42 H 0.250 0.750 43 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.730 1.926 6.646 12.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.090 4.090 3 C -0.214 4.214 4 C -0.169 4.169 5 C 0.378 3.622 6 O -0.451 6.451 7 N -0.331 5.331 8 C 0.015 3.985 9 C 0.019 3.981 10 H 0.054 0.946 11 C -0.020 4.020 12 O -0.315 6.315 13 C -0.031 4.031 14 C 0.024 3.976 15 N -0.331 5.331 16 C -0.366 4.366 17 H 0.082 0.918 18 C -0.221 4.221 19 N -0.568 5.568 20 Si 0.767 3.233 21 H -0.210 1.210 22 H -0.217 1.217 23 H -0.219 1.219 24 N -0.093 5.093 25 N -0.148 5.148 26 C 0.362 3.638 27 F -0.150 7.150 28 F -0.158 7.158 29 H 0.120 0.880 30 H 0.128 0.872 31 H 0.095 0.905 32 H 0.198 0.802 33 H 0.252 0.748 34 H 0.107 0.893 35 H 0.075 0.925 36 H 0.070 0.930 37 H 0.138 0.862 38 H 0.063 0.937 39 H 0.122 0.878 40 H 0.084 0.916 41 H 0.025 0.975 42 H 0.059 0.941 43 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -10.067 1.450 6.711 12.185 hybrid contribution -1.347 -0.228 -1.287 1.877 sum -11.414 1.222 5.424 12.696 Atomic orbital electron populations 1.20632 0.83109 1.05503 1.05167 1.22188 0.97446 0.85688 1.03690 1.21836 0.89408 1.00867 1.09266 1.22170 0.96019 0.89756 1.08923 1.17023 0.82305 0.86123 0.76733 1.90712 1.87332 1.13565 1.53485 1.45950 1.04658 1.11764 1.70686 1.21267 0.82197 0.93268 1.01800 1.21578 0.94049 0.92463 0.90035 0.94553 1.22983 0.85188 0.91114 1.02703 1.87805 1.45263 1.60015 1.38450 1.23213 0.99411 0.95195 0.85304 1.21248 0.84863 0.91468 1.00011 1.44302 1.14233 1.51071 1.23506 1.19222 1.04033 0.94897 1.18479 0.91751 1.25463 0.99659 0.95062 1.01945 1.70080 1.45274 0.99072 1.42402 0.85684 0.80075 0.76957 0.80616 1.20958 1.21703 1.21916 1.73604 1.00985 1.15479 1.19216 1.46809 1.04115 1.08056 1.55791 1.21487 0.89016 0.81160 0.72134 1.93143 1.77953 1.93460 1.50454 1.93130 1.78074 1.93309 1.51265 0.88036 0.87179 0.90504 0.80167 0.74794 0.89322 0.92509 0.93030 0.86221 0.93747 0.87759 0.91579 0.97545 0.94082 0.79074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.33 9.96 71.24 0.71 -0.62 16 2 C 0.03 0.79 6.79 41.40 0.28 1.07 16 3 C -0.19 -5.52 10.73 22.41 0.24 -5.27 16 4 C -0.01 -0.20 7.13 42.46 0.30 0.10 16 5 C 0.59 23.69 7.83 86.75 0.68 24.37 16 6 O -0.57 -24.45 16.93 -3.94 -0.07 -24.52 16 7 N -0.68 -27.02 3.80 -466.10 -1.77 -28.79 16 8 C 0.14 5.04 4.44 86.38 0.38 5.42 16 9 C 0.12 4.76 3.20 44.97 0.14 4.90 16 10 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 11 C 0.06 1.91 6.29 72.08 0.45 2.36 16 12 O -0.40 -14.39 10.74 -148.98 -1.60 -15.99 16 13 C 0.05 1.71 6.98 72.08 0.50 2.22 16 14 C 0.15 6.80 5.38 86.35 0.46 7.27 16 15 N -0.61 -27.89 3.03 -673.68 -2.04 -29.93 16 16 C -0.24 -11.90 7.11 84.04 0.60 -11.30 16 17 H 0.06 3.35 5.81 -2.91 -0.02 3.34 16 18 C -0.02 -1.28 5.06 84.86 0.43 -0.85 16 19 N -0.92 -50.65 11.13 21.65 0.24 -50.41 16 20 Si 0.94 44.55 29.57 68.60 2.03 46.58 16 21 H -0.28 -13.71 7.11 99.48 0.71 -13.00 16 22 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 23 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 24 N -0.26 -9.13 11.67 -48.17 -0.56 -9.69 16 25 N -0.35 -9.87 3.56 -351.21 -1.25 -11.12 16 26 C 0.49 10.50 5.86 127.77 0.75 11.25 16 27 F -0.17 -3.23 17.30 44.97 0.78 -2.45 16 28 F -0.18 -3.88 16.42 44.97 0.74 -3.14 16 29 H 0.10 1.23 8.14 -2.38 -0.02 1.21 16 30 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.08 1.14 6.90 -2.39 -0.02 1.13 16 32 H 0.18 4.61 8.06 -2.91 -0.02 4.58 16 33 H 0.41 17.78 7.10 -92.71 -0.66 17.12 16 34 H 0.09 2.77 8.14 -2.39 -0.02 2.75 16 35 H 0.06 2.24 7.53 -2.39 -0.02 2.22 16 36 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.12 3.06 8.14 -2.39 -0.02 3.04 16 38 H 0.04 1.61 8.14 -2.38 -0.02 1.59 16 39 H 0.10 3.31 8.14 -2.38 -0.02 3.29 16 40 H 0.07 3.35 6.33 -2.39 -0.02 3.34 16 41 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 42 H 0.25 13.45 8.31 -92.71 -0.77 12.68 16 43 H 0.19 3.33 8.14 -2.39 -0.02 3.31 16 Total: -1.00 -66.38 363.66 2.83 -63.55 By element: Atomic # 1 Polarization: 24.59 SS G_CDS: 0.41 Total: 25.00 kcal Atomic # 6 Polarization: 34.97 SS G_CDS: 5.94 Total: 40.90 kcal Atomic # 7 Polarization: -124.55 SS G_CDS: -5.39 Total: -129.93 kcal Atomic # 8 Polarization: -38.84 SS G_CDS: -1.67 Total: -40.51 kcal Atomic # 9 Polarization: -7.11 SS G_CDS: 1.52 Total: -5.59 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -66.38 2.83 -63.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050940138.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.302 kcal (2) G-P(sol) polarization free energy of solvation -66.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds