Wall clock time and date at job start Wed Apr 1 2020 02:15:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.46242 * 126.96073 * 2 1 4 4 C 1.39704 * 134.19373 * 359.97438 * 3 2 1 5 5 C 1.36629 * 119.71077 * 179.97438 * 4 3 2 6 6 C 1.38837 * 120.44424 * 359.97438 * 5 4 3 7 7 C 1.37793 * 120.74500 * 0.02562 * 6 5 4 8 8 C 1.39034 * 119.85159 * 359.97438 * 7 6 5 9 9 O 1.34719 * 133.23594 * 180.34290 * 8 7 6 10 10 C 1.34947 * 110.86117 * 180.02562 * 9 8 7 11 11 C 1.46975 * 125.13310 * 179.85458 * 10 9 8 12 12 O 1.21650 * 119.99953 * 179.69433 * 11 10 9 13 13 N 1.34783 * 119.99744 * 359.69066 * 11 10 9 14 14 C 1.46501 * 119.99866 * 180.02562 * 13 11 10 15 15 C 1.52997 * 109.46971 * 179.97438 * 14 13 11 16 16 H 1.08998 * 109.68096 * 299.90923 * 15 14 13 17 17 C 1.53300 * 109.68086 * 179.34954 * 15 14 13 18 18 O 1.42961 * 109.22065 * 187.97717 * 17 15 14 19 19 C 1.42963 * 114.16754 * 62.58455 * 18 17 15 20 20 C 1.53714 * 109.14561 * 297.28319 * 19 18 17 21 21 N 1.47152 * 109.68050 * 60.42621 * 15 14 13 22 22 C 1.36934 * 120.98309 * 350.23099 * 21 15 14 23 23 H 1.08002 * 119.99990 * 31.02787 * 22 21 15 24 24 C 1.38810 * 120.00285 * 211.02054 * 22 21 15 25 25 N 1.31617 * 119.99844 * 11.84793 * 24 22 21 26 26 Si 1.86804 * 120.00040 * 191.84370 * 24 22 21 27 27 H 1.48502 * 109.46961 * 179.97438 * 26 24 22 28 28 H 1.48493 * 109.47492 * 300.00204 * 26 24 22 29 29 H 1.48503 * 109.46831 * 60.00631 * 26 24 22 30 30 H 1.08999 * 109.47067 * 270.00433 * 1 2 3 31 31 H 1.08997 * 109.46722 * 30.00325 * 1 2 3 32 32 H 1.08997 * 109.47238 * 150.00203 * 1 2 3 33 33 H 1.07994 * 120.14625 * 359.95184 * 4 3 2 34 34 H 1.07997 * 119.77485 * 179.97438 * 5 4 3 35 35 H 1.08000 * 119.62465 * 180.02562 * 6 5 4 36 36 H 1.07997 * 120.07349 * 179.97438 * 7 6 5 37 37 H 0.97000 * 120.00078 * 0.02562 * 13 11 10 38 38 H 1.09003 * 109.46915 * 60.00333 * 14 13 11 39 39 H 1.08997 * 109.46836 * 300.00310 * 14 13 11 40 40 H 1.09005 * 109.51230 * 307.90473 * 17 15 14 41 41 H 1.09001 * 109.51081 * 68.05052 * 17 15 14 42 42 H 1.09003 * 109.51142 * 57.33879 * 19 18 17 43 43 H 1.09000 * 109.50910 * 177.49394 * 19 18 17 44 44 H 1.08997 * 109.84062 * 292.86280 * 20 19 18 45 45 H 1.08997 * 109.74436 * 172.16320 * 20 19 18 46 46 H 0.96998 * 119.99832 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3863 1.1685 0.0000 4 6 2.1715 2.5490 -0.0004 5 6 3.2399 3.4006 0.0002 6 6 4.5361 2.9030 0.0019 7 6 4.7693 1.5450 0.0024 8 6 3.6980 0.6588 0.0017 9 8 3.6125 -0.6857 0.0078 10 6 2.3236 -1.0852 0.0032 11 6 1.8716 -2.4838 0.0047 12 8 0.6820 -2.7385 0.0058 13 7 2.7750 -3.4839 0.0047 14 6 2.3245 -4.8780 0.0055 15 6 3.5403 -5.8068 0.0047 16 1 4.1418 -5.6233 -0.8855 17 6 3.0743 -7.2671 0.0220 18 8 4.2063 -8.1202 0.2085 19 6 4.8847 -7.9289 1.4523 20 6 5.4470 -6.4993 1.5052 21 7 4.3504 -5.5638 1.2089 22 6 4.0949 -4.4956 2.0266 23 1 3.0862 -4.1239 2.1303 24 6 5.1324 -3.8904 2.7225 25 7 6.3813 -4.1818 2.4265 26 14 4.7560 -2.6625 4.0790 27 1 6.0274 -2.1641 4.6623 28 1 3.9888 -1.5225 3.5159 29 1 3.9526 -3.3252 5.1376 30 1 -0.3633 0.0001 1.0277 31 1 -0.3633 0.8900 -0.5139 32 1 -0.3633 -0.8900 -0.5138 33 1 1.1653 2.9413 -0.0017 34 1 3.0751 4.4679 -0.0005 35 1 5.3709 3.5882 0.0028 36 1 5.7821 1.1698 0.0033 37 1 3.7235 -3.2808 0.0041 38 1 1.7235 -5.0661 -0.8841 39 1 1.7243 -5.0652 0.8959 40 1 2.3687 -7.4145 0.8397 41 1 2.5904 -7.5061 -0.9250 42 1 4.1857 -8.0787 2.2751 43 1 5.7033 -8.6440 1.5341 44 1 6.2374 -6.3849 0.7634 45 1 5.8441 -6.2963 2.4997 46 1 7.1063 -3.7586 2.9126 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001051237689.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:15:38 Heat of formation + Delta-G solvation = -20.572386 kcal Electronic energy + Delta-G solvation = -30946.635515 eV Core-core repulsion = 26803.800944 eV Total energy + Delta-G solvation = -4142.834571 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.38157 -39.34686 -38.34854 -37.76406 -35.49105 -33.94867 -33.47326 -31.69555 -30.59725 -30.46891 -29.81462 -27.70539 -27.15336 -25.64392 -23.62285 -23.45475 -22.64442 -21.74850 -20.51039 -19.96233 -19.64759 -18.05742 -16.98856 -16.69602 -16.32894 -16.11730 -15.82318 -15.70105 -15.03743 -14.67365 -14.64031 -14.34513 -14.10202 -13.85599 -13.75451 -13.59411 -13.34134 -13.03447 -12.94324 -12.72119 -12.56736 -12.27918 -12.22870 -11.92088 -11.78384 -11.59316 -11.07135 -10.94796 -10.87750 -10.80571 -10.45718 -10.29331 -10.07835 -9.88524 -9.79817 -9.67133 -9.03247 -8.74767 -8.64603 -8.45250 -8.03641 -6.76276 -5.93430 -3.42653 0.66127 1.33408 1.94815 2.68271 3.29971 3.34654 3.38126 3.46089 3.59607 3.66946 4.32958 4.49194 4.54318 4.60598 4.83292 4.97941 5.08860 5.13031 5.24478 5.27122 5.36301 5.46056 5.52372 5.64792 5.69032 5.78617 5.81012 5.94640 5.97869 6.01083 6.03115 6.11797 6.16050 6.20521 6.27563 6.29412 6.36179 6.47370 6.49303 6.56674 6.69301 6.89723 7.04106 7.15006 7.46238 7.66803 7.83787 8.02424 8.25988 8.53464 9.02782 9.63379 10.22067 11.13036 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.012960 B = 0.003881 C = 0.003328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2159.965344 B = 7212.880490 C = 8411.643322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.100 4.100 3 C -0.139 4.139 4 C -0.063 4.063 5 C -0.143 4.143 6 C -0.090 4.090 7 C -0.108 4.108 8 C 0.072 3.928 9 O -0.172 6.172 10 C -0.013 4.013 11 C 0.589 3.411 12 O -0.536 6.536 13 N -0.677 5.677 14 C 0.134 3.866 15 C 0.124 3.876 16 H 0.042 0.958 17 C 0.057 3.943 18 O -0.392 6.392 19 C 0.034 3.966 20 C 0.145 3.855 21 N -0.592 5.592 22 C -0.260 4.260 23 H 0.072 0.928 24 C 0.015 3.985 25 N -0.897 5.897 26 Si 0.893 3.107 27 H -0.288 1.288 28 H -0.280 1.280 29 H -0.282 1.282 30 H 0.073 0.927 31 H 0.063 0.937 32 H 0.091 0.909 33 H 0.127 0.873 34 H 0.128 0.872 35 H 0.134 0.866 36 H 0.136 0.864 37 H 0.422 0.578 38 H 0.064 0.936 39 H 0.072 0.928 40 H 0.047 0.953 41 H 0.083 0.917 42 H 0.041 0.959 43 H 0.079 0.921 44 H 0.030 0.970 45 H 0.092 0.908 46 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.571 8.925 -5.750 11.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.103 4.103 3 C -0.140 4.140 4 C -0.081 4.081 5 C -0.162 4.162 6 C -0.108 4.108 7 C -0.126 4.126 8 C 0.023 3.977 9 O -0.072 6.072 10 C -0.063 4.063 11 C 0.374 3.626 12 O -0.417 6.417 13 N -0.327 5.327 14 C 0.010 3.990 15 C 0.017 3.983 16 H 0.060 0.940 17 C -0.022 4.022 18 O -0.310 6.310 19 C -0.043 4.043 20 C 0.019 3.981 21 N -0.317 5.317 22 C -0.389 4.389 23 H 0.089 0.911 24 C -0.185 4.185 25 N -0.540 5.540 26 Si 0.723 3.277 27 H -0.214 1.214 28 H -0.206 1.206 29 H -0.208 1.208 30 H 0.092 0.908 31 H 0.082 0.918 32 H 0.110 0.890 33 H 0.145 0.855 34 H 0.146 0.854 35 H 0.152 0.848 36 H 0.154 0.846 37 H 0.262 0.738 38 H 0.083 0.917 39 H 0.090 0.910 40 H 0.066 0.934 41 H 0.102 0.898 42 H 0.060 0.940 43 H 0.098 0.902 44 H 0.048 0.952 45 H 0.110 0.890 46 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -5.917 8.441 -5.800 11.827 hybrid contribution 0.463 1.089 1.144 1.646 sum -5.453 9.530 -4.656 11.926 Atomic orbital electron populations 1.20368 0.87643 1.03459 1.02873 1.21300 0.96893 0.89438 1.02716 1.19823 0.92447 0.94298 1.07459 1.20292 0.99565 0.90283 0.97975 1.20733 0.92300 0.99790 1.03336 1.20948 0.97417 0.93675 0.98807 1.20062 0.97099 0.91200 1.04263 1.19771 0.95481 0.81444 1.00975 1.84146 1.27061 1.20547 1.75479 1.21965 0.80973 0.95145 1.08235 1.16625 0.85898 0.81809 0.78242 1.90778 1.15442 1.82552 1.52899 1.46020 1.11104 1.05451 1.70098 1.21284 0.96507 0.79807 1.01402 1.21444 0.92067 0.92797 0.92022 0.94008 1.22854 0.88110 0.90724 1.00534 1.87802 1.44011 1.60013 1.39222 1.23433 0.95726 1.00065 0.85118 1.21496 0.89491 0.84823 1.02247 1.44100 1.35824 1.28659 1.23155 1.19134 0.92718 1.06900 1.20190 0.91074 1.25092 0.95245 0.97919 1.00231 1.69966 0.97807 1.44890 1.41322 0.86503 0.77236 0.81579 0.82430 1.21400 1.20595 1.20849 0.90826 0.91774 0.89030 0.85523 0.85396 0.84777 0.84641 0.73841 0.91736 0.90956 0.93422 0.89844 0.94038 0.90240 0.95193 0.88994 0.93339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.19 9.81 36.01 0.35 -0.84 16 2 C -0.10 -1.66 6.39 -102.28 -0.65 -2.32 16 3 C -0.14 -2.17 6.37 -105.20 -0.67 -2.84 16 4 C -0.06 -0.77 10.06 -39.62 -0.40 -1.17 16 5 C -0.14 -1.51 9.98 -39.94 -0.40 -1.90 16 6 C -0.09 -0.99 10.01 -39.52 -0.40 -1.38 16 7 C -0.11 -1.49 10.07 -39.45 -0.40 -1.89 16 8 C 0.07 1.22 7.41 -38.35 -0.28 0.94 16 9 O -0.17 -3.32 10.28 2.76 0.03 -3.29 16 10 C -0.01 -0.25 7.07 -36.91 -0.26 -0.51 16 11 C 0.59 11.49 7.79 -12.72 -0.10 11.40 16 12 O -0.54 -10.80 14.62 5.23 0.08 -10.72 16 13 N -0.68 -13.23 3.76 -61.53 -0.23 -13.46 16 14 C 0.13 2.43 4.45 -4.04 -0.02 2.42 16 15 C 0.12 2.39 3.21 -67.42 -0.22 2.18 16 16 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 17 C 0.06 0.99 6.29 37.31 0.23 1.22 16 18 O -0.39 -7.52 10.74 -35.23 -0.38 -7.90 16 19 C 0.03 0.66 7.00 37.53 0.26 0.92 16 20 C 0.14 3.28 5.41 -3.31 -0.02 3.26 16 21 N -0.59 -13.60 3.03 -164.05 -0.50 -14.10 16 22 C -0.26 -6.49 7.05 -15.06 -0.11 -6.60 16 23 H 0.07 1.81 5.80 -52.49 -0.30 1.51 16 24 C 0.02 0.40 5.04 -17.43 -0.09 0.31 16 25 N -0.90 -24.33 11.17 55.49 0.62 -23.71 16 26 Si 0.89 21.44 29.57 -169.99 -5.03 16.41 16 27 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 28 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 29 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 30 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.09 1.35 6.38 -51.93 -0.33 1.02 16 33 H 0.13 1.22 8.06 -52.49 -0.42 0.79 16 34 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 35 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 36 H 0.14 1.69 8.06 -52.49 -0.42 1.27 16 37 H 0.42 8.94 7.01 -40.82 -0.29 8.65 16 38 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.07 1.40 7.58 -51.93 -0.39 1.00 16 40 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 41 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 42 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.08 1.34 8.14 -51.93 -0.42 0.91 16 44 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 45 H 0.09 2.29 6.33 -51.93 -0.33 1.96 16 46 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 LS Contribution 374.79 15.07 5.65 5.65 Total: -1.00 -29.69 374.79 -9.19 -38.87 By element: Atomic # 1 Polarization: 15.34 SS G_CDS: -6.28 Total: 9.06 kcal Atomic # 6 Polarization: 6.34 SS G_CDS: -3.15 Total: 3.19 kcal Atomic # 7 Polarization: -51.16 SS G_CDS: -0.11 Total: -51.27 kcal Atomic # 8 Polarization: -21.64 SS G_CDS: -0.27 Total: -21.91 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.03 Total: 16.41 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -29.69 -9.19 -38.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051237689.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.302 kcal (2) G-P(sol) polarization free energy of solvation -29.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds