Wall clock time and date at job start Wed Apr 1 2020 02:15:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.46249 * 126.96094 * 2 1 4 4 C 1.39711 * 134.18874 * 0.82073 * 3 2 1 5 5 C 1.36623 * 119.70981 * 179.51671 * 4 3 2 6 6 C 1.38837 * 120.44580 * 359.70187 * 5 4 3 7 7 C 1.37803 * 120.74184 * 359.97438 * 6 5 4 8 8 C 1.39025 * 119.85508 * 0.02562 * 7 6 5 9 9 O 1.34709 * 133.23923 * 180.02562 * 8 7 6 10 10 C 1.34952 * 110.86339 * 179.97438 * 9 8 7 11 11 C 1.46973 * 125.13225 * 179.97438 * 10 9 8 12 12 O 1.21656 * 120.00296 * 180.02562 * 11 10 9 13 13 N 1.34777 * 120.00425 * 0.03687 * 11 10 9 14 14 C 1.46498 * 120.00554 * 180.02562 * 13 11 10 15 15 C 1.53002 * 109.47075 * 180.02562 * 14 13 11 16 16 H 1.08999 * 109.67982 * 59.10648 * 15 14 13 17 17 C 1.53300 * 109.67908 * 179.61780 * 15 14 13 18 18 O 1.42961 * 109.22111 * 172.02390 * 17 15 14 19 19 C 1.42963 * 114.17051 * 297.42178 * 18 17 15 20 20 C 1.53297 * 109.22059 * 62.58032 * 19 18 17 21 21 N 1.47145 * 109.68217 * 298.58279 * 15 14 13 22 22 C 1.36939 * 120.98270 * 9.71405 * 21 15 14 23 23 H 1.07993 * 120.00042 * 329.55133 * 22 21 15 24 24 C 1.38816 * 119.99859 * 149.55312 * 22 21 15 25 25 N 1.31616 * 120.00219 * 163.24430 * 24 22 21 26 26 Si 1.86804 * 119.99976 * 343.23760 * 24 22 21 27 27 H 1.48497 * 109.46844 * 88.92459 * 26 24 22 28 28 H 1.48506 * 109.47058 * 208.92651 * 26 24 22 29 29 H 1.48494 * 109.47164 * 328.92495 * 26 24 22 30 30 H 1.09004 * 109.47062 * 269.71207 * 1 2 3 31 31 H 1.08990 * 109.47169 * 149.71466 * 1 2 3 32 32 H 1.08999 * 109.47083 * 29.71004 * 1 2 3 33 33 H 1.07999 * 120.14314 * 359.21892 * 4 3 2 34 34 H 1.07997 * 119.77424 * 179.67017 * 5 4 3 35 35 H 1.07992 * 119.62864 * 179.97438 * 6 5 4 36 36 H 1.07998 * 120.07212 * 180.02562 * 7 6 5 37 37 H 0.97007 * 119.99276 * 0.02562 * 13 11 10 38 38 H 1.09001 * 109.46851 * 300.00139 * 14 13 11 39 39 H 1.09004 * 109.46961 * 60.00187 * 14 13 11 40 40 H 1.08995 * 109.51179 * 291.95485 * 17 15 14 41 41 H 1.09005 * 109.51074 * 52.05645 * 17 15 14 42 42 H 1.08994 * 109.51581 * 182.50321 * 19 18 17 43 43 H 1.09003 * 109.51205 * 302.66186 * 19 18 17 44 44 H 1.09001 * 109.68509 * 67.42039 * 20 19 18 45 45 H 1.09001 * 109.68008 * 187.97888 * 20 19 18 46 46 H 0.96993 * 120.00734 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3863 1.1686 0.0000 4 6 2.1715 2.5490 0.0143 5 6 3.2398 3.4006 0.0195 6 6 4.5360 2.9031 0.0167 7 6 4.7693 1.5450 0.0094 8 6 3.6980 0.6588 0.0040 9 8 3.6125 -0.6856 -0.0029 10 6 2.3235 -1.0852 -0.0053 11 6 1.8716 -2.4837 -0.0132 12 8 0.6821 -2.7385 -0.0153 13 7 2.7750 -3.4839 -0.0180 14 6 2.3245 -4.8778 -0.0264 15 6 3.5404 -5.8067 -0.0298 16 1 4.1506 -5.6157 0.8529 17 6 3.0743 -7.2671 -0.0290 18 8 4.2043 -8.1218 -0.2195 19 6 4.8700 -7.9419 -1.4718 20 6 5.4279 -6.5160 -1.5464 21 7 4.3384 -5.5740 -1.2440 22 6 4.0740 -4.5133 -2.0688 23 1 3.0656 -4.1375 -2.1587 24 6 5.1023 -3.9213 -2.7893 25 7 4.8247 -3.1405 -3.8119 26 14 6.8801 -4.2327 -2.3075 27 1 7.3810 -5.4379 -3.0158 28 1 7.7076 -3.0581 -2.6829 29 1 6.9648 -4.4494 -0.8409 30 1 -0.3633 -0.0052 1.0277 31 1 -0.3633 -0.8873 -0.5182 32 1 -0.3633 0.8926 -0.5093 33 1 1.1652 2.9413 0.0165 34 1 3.0749 4.4679 0.0252 35 1 5.3708 3.5882 0.0204 36 1 5.7820 1.1698 0.0077 37 1 3.7235 -3.2806 -0.0158 38 1 1.7229 -5.0706 0.8618 39 1 1.7248 -5.0605 -0.9182 40 1 2.6002 -7.4974 0.9250 41 1 2.3597 -7.4217 -0.8375 42 1 5.6877 -8.6576 -1.5557 43 1 4.1625 -8.0990 -2.2860 44 1 6.2288 -6.3965 -0.8167 45 1 5.8118 -6.3239 -2.5484 46 1 5.5431 -2.7266 -4.3152 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001051237690.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:15:41 Heat of formation + Delta-G solvation = -14.556261 kcal Electronic energy + Delta-G solvation = -30912.980175 eV Core-core repulsion = 26770.406484 eV Total energy + Delta-G solvation = -4142.573692 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.32464 -39.41686 -38.55178 -37.72089 -35.60636 -33.99391 -33.48432 -31.83106 -31.14214 -30.49292 -29.79472 -27.79587 -27.35216 -25.68398 -23.69694 -23.40481 -22.61110 -22.14725 -20.49807 -20.06422 -19.72796 -18.02574 -16.94958 -16.76866 -16.31643 -16.19117 -15.91282 -15.82569 -15.18142 -15.02035 -14.73341 -14.44461 -14.07589 -13.98534 -13.94363 -13.66971 -13.45758 -13.03401 -12.92167 -12.59702 -12.57254 -12.30239 -12.17312 -12.12276 -11.89889 -11.73115 -11.62529 -11.17996 -10.89968 -10.81714 -10.58137 -10.36869 -9.88471 -9.81566 -9.75566 -9.64966 -9.34424 -8.74966 -8.60758 -8.47542 -7.98859 -7.05751 -6.06142 -3.50161 0.71775 1.38797 2.00606 2.73117 3.20591 3.38449 3.39639 3.47838 3.64095 3.72377 4.25133 4.39791 4.55952 4.62334 4.66607 4.88302 5.02868 5.15780 5.19568 5.30581 5.36538 5.39853 5.48513 5.52765 5.61603 5.70250 5.75593 5.82626 5.85422 5.87526 5.93948 6.01839 6.06221 6.10008 6.17023 6.25281 6.31720 6.33090 6.41245 6.47032 6.54190 6.61550 6.66706 6.88989 7.19603 7.56238 7.77538 8.01847 8.21216 8.55173 8.75368 9.55824 9.91974 11.07833 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.013270 B = 0.003847 C = 0.003214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2109.480079 B = 7276.023016 C = 8711.062774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.099 4.099 3 C -0.138 4.138 4 C -0.063 4.063 5 C -0.144 4.144 6 C -0.091 4.091 7 C -0.108 4.108 8 C 0.073 3.927 9 O -0.173 6.173 10 C -0.009 4.009 11 C 0.595 3.405 12 O -0.534 6.534 13 N -0.678 5.678 14 C 0.135 3.865 15 C 0.127 3.873 16 H 0.047 0.953 17 C 0.055 3.945 18 O -0.388 6.388 19 C 0.046 3.954 20 C 0.091 3.909 21 N -0.607 5.607 22 C -0.272 4.272 23 H 0.096 0.904 24 C 0.034 3.966 25 N -0.898 5.898 26 Si 0.881 3.119 27 H -0.287 1.287 28 H -0.303 1.303 29 H -0.271 1.271 30 H 0.072 0.928 31 H 0.092 0.908 32 H 0.064 0.936 33 H 0.127 0.873 34 H 0.128 0.872 35 H 0.134 0.866 36 H 0.134 0.866 37 H 0.418 0.582 38 H 0.067 0.933 39 H 0.076 0.924 40 H 0.089 0.911 41 H 0.053 0.947 42 H 0.085 0.915 43 H 0.052 0.948 44 H 0.034 0.966 45 H 0.082 0.918 46 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.989 6.523 9.046 11.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.103 4.103 3 C -0.139 4.139 4 C -0.081 4.081 5 C -0.162 4.162 6 C -0.109 4.109 7 C -0.126 4.126 8 C 0.025 3.975 9 O -0.074 6.074 10 C -0.059 4.059 11 C 0.380 3.620 12 O -0.415 6.415 13 N -0.328 5.328 14 C 0.011 3.989 15 C 0.020 3.980 16 H 0.065 0.935 17 C -0.024 4.024 18 O -0.306 6.306 19 C -0.032 4.032 20 C -0.035 4.035 21 N -0.334 5.334 22 C -0.400 4.400 23 H 0.113 0.887 24 C -0.167 4.167 25 N -0.539 5.539 26 Si 0.712 3.288 27 H -0.215 1.215 28 H -0.231 1.231 29 H -0.196 1.196 30 H 0.090 0.910 31 H 0.110 0.890 32 H 0.083 0.917 33 H 0.145 0.855 34 H 0.146 0.854 35 H 0.151 0.849 36 H 0.152 0.848 37 H 0.256 0.744 38 H 0.085 0.915 39 H 0.094 0.906 40 H 0.107 0.893 41 H 0.072 0.928 42 H 0.103 0.897 43 H 0.070 0.930 44 H 0.052 0.948 45 H 0.100 0.900 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.460 6.101 9.035 11.437 hybrid contribution 1.684 0.300 -0.307 1.738 sum -1.776 6.401 8.728 10.968 Atomic orbital electron populations 1.20366 0.87682 1.03700 1.02600 1.21281 0.96868 0.89423 1.02690 1.19818 0.92443 0.94276 1.07334 1.20292 0.99548 0.90307 0.97924 1.20720 0.92299 0.99762 1.03410 1.20930 0.97396 0.93654 0.98891 1.20026 0.96982 0.91217 1.04416 1.19739 0.95470 0.81418 1.00915 1.84116 1.27156 1.20576 1.75526 1.21894 0.80913 0.95048 1.08067 1.16564 0.85805 0.81783 0.77862 1.90779 1.15450 1.82537 1.52716 1.45886 1.10822 1.05395 1.70651 1.21252 0.96100 0.79785 1.01766 1.21458 0.92341 0.93324 0.90827 0.93531 1.22900 0.88123 0.90204 1.01177 1.87829 1.44556 1.60290 1.37932 1.23071 0.96456 0.97875 0.85800 1.22065 0.91472 0.89332 1.00585 1.44430 1.36706 1.28766 1.23457 1.18962 0.95242 1.06814 1.18960 0.88687 1.25326 0.97590 0.96617 0.97176 1.69786 1.32370 1.33619 1.18159 0.87019 0.86543 0.76025 0.79238 1.21459 1.23081 1.19573 0.90977 0.88965 0.91732 0.85537 0.85439 0.84858 0.84827 0.74393 0.91509 0.90560 0.89299 0.92830 0.89725 0.92959 0.94806 0.89993 0.92587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.23 9.81 36.00 0.35 -0.88 16 2 C -0.10 -1.69 6.39 -102.28 -0.65 -2.34 16 3 C -0.14 -2.19 6.37 -105.19 -0.67 -2.86 16 4 C -0.06 -0.78 10.06 -39.61 -0.40 -1.18 16 5 C -0.14 -1.55 9.98 -39.94 -0.40 -1.95 16 6 C -0.09 -1.01 10.01 -39.52 -0.40 -1.41 16 7 C -0.11 -1.51 10.07 -39.45 -0.40 -1.91 16 8 C 0.07 1.26 7.41 -38.35 -0.28 0.97 16 9 O -0.17 -3.37 10.28 2.78 0.03 -3.34 16 10 C -0.01 -0.17 7.07 -36.92 -0.26 -0.44 16 11 C 0.59 11.76 7.79 -12.72 -0.10 11.66 16 12 O -0.53 -10.96 14.62 5.23 0.08 -10.88 16 13 N -0.68 -13.16 3.79 -61.52 -0.23 -13.40 16 14 C 0.13 2.39 4.44 -4.04 -0.02 2.37 16 15 C 0.13 2.31 3.20 -67.42 -0.22 2.09 16 16 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 17 C 0.05 0.88 6.29 37.31 0.23 1.11 16 18 O -0.39 -6.82 10.74 -35.23 -0.38 -7.20 16 19 C 0.05 0.80 6.99 37.31 0.26 1.06 16 20 C 0.09 1.87 4.38 -3.52 -0.02 1.86 16 21 N -0.61 -13.27 2.78 -164.29 -0.46 -13.73 16 22 C -0.27 -6.91 7.59 -15.06 -0.11 -7.03 16 23 H 0.10 2.63 5.98 -52.49 -0.31 2.32 16 24 C 0.03 0.91 5.29 -17.43 -0.09 0.82 16 25 N -0.90 -26.32 13.97 55.49 0.78 -25.54 16 26 Si 0.88 21.31 24.28 -169.99 -4.13 17.18 16 27 H -0.29 -6.72 6.54 56.52 0.37 -6.35 16 28 H -0.30 -7.57 7.11 56.52 0.40 -7.17 16 29 H -0.27 -6.43 6.65 56.52 0.38 -6.05 16 30 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 31 H 0.09 1.46 6.37 -51.93 -0.33 1.13 16 32 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 34 H 0.13 0.98 8.06 -52.49 -0.42 0.55 16 35 H 0.13 1.07 8.06 -52.49 -0.42 0.64 16 36 H 0.13 1.68 8.06 -52.49 -0.42 1.26 16 37 H 0.42 8.60 7.10 -40.82 -0.29 8.31 16 38 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.08 1.49 7.52 -51.93 -0.39 1.10 16 40 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 41 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 43 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 44 H 0.03 0.71 6.82 -51.93 -0.35 0.36 16 45 H 0.08 1.82 4.89 -51.93 -0.25 1.57 16 46 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 368.23 15.07 5.55 5.55 Total: -1.00 -31.29 368.23 -8.13 -39.42 By element: Atomic # 1 Polarization: 16.16 SS G_CDS: -6.20 Total: 9.96 kcal Atomic # 6 Polarization: 5.14 SS G_CDS: -3.16 Total: 1.98 kcal Atomic # 7 Polarization: -52.75 SS G_CDS: 0.08 Total: -52.67 kcal Atomic # 8 Polarization: -21.14 SS G_CDS: -0.27 Total: -21.42 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.13 Total: 17.18 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -31.29 -8.13 -39.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051237690.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.861 kcal (2) G-P(sol) polarization free energy of solvation -31.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds