Wall clock time and date at job start Wed Apr 1 2020 02:07:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86803 * 120.00061 * 2 1 4 4 H 1.48500 * 109.47112 * 0.02562 * 3 2 1 5 5 H 1.48505 * 109.46839 * 120.00189 * 3 2 1 6 6 H 1.48501 * 109.47188 * 240.00111 * 3 2 1 7 7 C 1.38810 * 120.00085 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00030 * 208.52572 * 7 2 1 9 9 N 1.36934 * 120.00178 * 28.51874 * 7 2 1 10 10 C 1.47543 * 125.65616 * 19.38783 * 9 7 2 11 11 C 1.55413 * 104.88226 * 155.98416 * 10 9 7 12 12 C 1.53859 * 101.30199 * 35.97636 * 11 10 9 13 13 C 1.52572 * 115.91217 * 95.36853 * 12 11 10 14 14 N 1.47846 * 85.65792 * 94.97690 * 13 12 11 15 15 C 1.34774 * 134.36471 * 203.60495 * 14 13 12 16 16 O 1.21287 * 120.00340 * 180.02562 * 15 14 13 17 17 C 1.50693 * 120.00336 * 0.03561 * 15 14 13 18 18 C 1.54893 * 129.08917 * 299.94050 * 17 15 14 19 19 C 1.57165 * 77.91676 * 180.15876 * 18 17 15 20 20 C 1.53007 * 129.24835 * 179.19137 * 19 18 17 21 21 F 1.39901 * 109.47311 * 301.28630 * 20 19 18 22 22 F 1.39896 * 109.47026 * 61.28960 * 20 19 18 23 23 F 1.39898 * 109.47027 * 181.28342 * 20 19 18 24 24 C 1.54409 * 129.01824 * 179.97438 * 17 15 14 25 25 C 1.54883 * 83.77506 * 317.35528 * 19 18 17 26 26 C 1.47850 * 91.27392 * 23.63058 * 14 13 12 27 27 C 1.47367 * 125.66220 * 199.69949 * 9 7 2 28 28 H 0.96997 * 119.99791 * 185.64247 * 1 2 3 29 29 H 1.08994 * 110.33816 * 274.97696 * 10 9 7 30 30 H 1.09002 * 110.33072 * 37.21540 * 10 9 7 31 31 H 1.09002 * 111.25423 * 277.90494 * 11 10 9 32 32 H 1.09004 * 110.94891 * 153.91171 * 11 10 9 33 33 H 1.08993 * 113.84304 * 209.16212 * 13 12 11 34 34 H 1.09004 * 113.84064 * 340.80011 * 13 12 11 35 35 H 1.09004 * 114.97667 * 291.95196 * 18 17 15 36 36 H 1.08995 * 114.98204 * 67.12454 * 18 17 15 37 37 H 1.09003 * 114.93685 * 293.13100 * 24 17 15 38 38 H 1.08997 * 114.93508 * 68.16007 * 24 17 15 39 39 H 1.09004 * 116.12443 * 290.12160 * 25 19 18 40 40 H 1.09001 * 113.83780 * 154.96270 * 25 19 18 41 41 H 1.08996 * 113.84527 * 222.18225 * 26 14 13 42 42 H 1.08999 * 113.95626 * 90.56129 * 26 14 13 43 43 H 1.09005 * 109.98097 * 301.37434 * 27 9 7 44 44 H 1.09000 * 109.98082 * 62.67566 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2852 2.7465 0.0006 5 1 3.1040 1.6963 1.2125 6 1 3.1040 1.6964 -1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 2.9919 -1.2591 0.4461 9 7 1.4503 -2.3158 -0.5672 10 6 0.3431 -2.3204 -1.5425 11 6 0.4952 -3.6616 -2.3127 12 6 0.9826 -4.5984 -1.1937 13 6 -0.0964 -5.4196 -0.4943 14 7 0.2552 -6.4894 -1.4522 15 6 -0.3941 -7.5614 -1.9479 16 8 0.1583 -8.2901 -2.7447 17 6 -1.8067 -7.8544 -1.5124 18 6 -2.3506 -8.1429 -0.0911 19 6 -3.6520 -8.2384 -0.9670 20 6 -5.0864 -8.5546 -0.5383 21 9 -5.1233 -9.8110 0.0758 22 9 -5.5287 -7.5812 0.3639 23 9 -5.9185 -8.5605 -1.6629 24 6 -2.7362 -9.0103 -1.9416 25 6 -3.0756 -6.9784 -1.6593 26 6 1.6034 -5.9153 -1.6492 27 6 1.8490 -3.7090 -0.2993 28 1 -0.4850 -0.8360 0.0826 29 1 -0.6163 -2.2834 -1.0266 30 1 0.4385 -1.4780 -2.2276 31 1 1.2383 -3.5797 -3.1059 32 1 -0.4639 -3.9934 -2.7106 33 1 0.1370 -5.6621 0.5423 34 1 -1.1042 -5.0251 -0.6249 35 1 -2.0243 -9.0878 0.3436 36 1 -2.3041 -7.3008 0.5993 37 1 -3.0502 -8.9843 -2.9851 38 1 -2.4294 -9.9983 -1.5986 39 1 -3.0744 -6.0634 -1.0669 40 1 -3.4236 -6.8403 -2.6830 41 1 1.9330 -5.9110 -2.6881 42 1 2.3558 -6.3076 -0.9651 43 1 2.9022 -3.8485 -0.5435 44 1 1.6740 -3.9516 0.7488 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073459304.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:07:35 Heat of formation + Delta-G solvation = -22.219149 kcal Electronic energy + Delta-G solvation = -30810.687344 eV Core-core repulsion = 26125.924624 eV Total energy + Delta-G solvation = -4684.762720 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.145 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -50.39164 -47.94271 -47.92450 -42.57416 -40.52994 -38.14202 -35.91059 -32.43974 -29.88400 -29.03695 -28.32826 -26.64075 -26.39549 -26.17294 -25.91220 -24.20920 -23.19591 -20.64594 -20.39778 -18.72438 -18.71376 -18.62812 -18.56019 -17.78627 -17.44913 -16.49512 -15.81554 -15.57400 -15.06166 -14.96415 -14.77584 -14.63769 -14.61798 -14.35892 -14.26273 -14.08385 -14.08290 -13.82550 -13.68718 -13.32952 -13.18882 -12.61568 -12.35483 -12.23289 -12.07496 -12.00337 -11.79593 -11.75664 -11.35819 -10.96391 -10.88319 -10.78663 -10.64446 -10.61959 -10.46595 -10.20003 -10.03539 -9.85493 -9.56523 -8.78449 -8.44299 -6.99607 -6.16011 -3.22175 2.20015 2.24470 2.60656 3.05164 3.16201 3.38252 3.46878 3.51110 3.68609 3.68710 3.83084 4.00961 4.17494 4.24279 4.27799 4.43576 4.54126 4.77896 4.96405 5.00760 5.05374 5.14428 5.24080 5.31815 5.32573 5.33817 5.37421 5.38745 5.45477 5.49127 5.60410 5.63213 5.73215 5.94115 5.95663 6.15574 6.28117 6.49567 6.54675 6.88389 6.94530 7.55462 7.75251 7.98811 8.43582 8.95278 9.74871 10.30605 11.16270 Molecular weight = 344.15amu Principal moments of inertia in cm(-1) A = 0.016026 B = 0.002632 C = 0.002372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1746.747791 B =10635.351929 C =11800.615699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C -0.023 4.023 3 Si 1.063 2.937 4 H -0.285 1.285 5 H -0.293 1.293 6 H -0.293 1.293 7 C -0.339 4.339 8 H 0.063 0.937 9 N -0.601 5.601 10 C 0.145 3.855 11 C -0.110 4.110 12 C -0.103 4.103 13 C 0.118 3.882 14 N -0.632 5.632 15 C 0.597 3.403 16 O -0.536 6.536 17 C -0.146 4.146 18 C -0.072 4.072 19 C -0.224 4.224 20 C 0.523 3.477 21 F -0.176 7.176 22 F -0.174 7.174 23 F -0.176 7.176 24 C -0.063 4.063 25 C -0.072 4.072 26 C 0.126 3.874 27 C 0.150 3.850 28 H 0.268 0.732 29 H 0.027 0.973 30 H 0.050 0.950 31 H 0.071 0.929 32 H 0.064 0.936 33 H 0.090 0.910 34 H 0.084 0.916 35 H 0.092 0.908 36 H 0.095 0.905 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.096 0.904 40 H 0.091 0.909 41 H 0.084 0.916 42 H 0.088 0.912 43 H 0.033 0.967 44 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.606 -17.968 -1.632 19.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.225 4.225 3 Si 0.893 3.107 4 H -0.211 1.211 5 H -0.220 1.220 6 H -0.221 1.221 7 C -0.467 4.467 8 H 0.081 0.919 9 N -0.328 5.328 10 C 0.020 3.980 11 C -0.148 4.148 12 C -0.105 4.105 13 C -0.005 4.005 14 N -0.367 5.367 15 C 0.385 3.615 16 O -0.413 6.413 17 C -0.149 4.149 18 C -0.109 4.109 19 C -0.225 4.225 20 C 0.469 3.531 21 F -0.158 7.158 22 F -0.155 7.155 23 F -0.157 7.157 24 C -0.101 4.101 25 C -0.109 4.109 26 C 0.004 3.996 27 C 0.024 3.976 28 H 0.079 0.921 29 H 0.045 0.955 30 H 0.069 0.931 31 H 0.090 0.910 32 H 0.082 0.918 33 H 0.108 0.892 34 H 0.102 0.898 35 H 0.110 0.890 36 H 0.113 0.887 37 H 0.110 0.890 38 H 0.110 0.890 39 H 0.115 0.885 40 H 0.110 0.890 41 H 0.103 0.897 42 H 0.106 0.894 43 H 0.051 0.949 44 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -7.565 -16.793 -2.147 18.543 hybrid contribution -0.190 -1.798 0.364 1.844 sum -7.755 -18.591 -1.783 20.222 Atomic orbital electron populations 1.70801 1.06689 1.30124 1.47658 1.25761 0.96386 1.01149 0.99210 0.83549 0.74873 0.76075 0.76230 1.21087 1.21978 1.22074 1.19692 0.99778 0.88144 1.39089 0.91871 1.44616 1.40683 1.00220 1.47312 1.21632 0.91732 0.93816 0.90837 1.22537 1.00283 0.96022 0.95982 1.22447 0.96327 0.93642 0.98039 1.23229 1.00269 0.83439 0.93515 1.50046 1.16722 1.25426 1.44456 1.17966 0.84237 0.78724 0.80566 1.90724 1.68131 1.47683 1.34794 1.23613 0.92504 0.99655 0.99152 1.24481 0.88861 1.03480 0.94106 1.25312 0.90636 1.03491 1.03076 1.18377 0.85834 0.74165 0.74709 1.93200 1.96895 1.42160 1.83505 1.93218 1.90777 1.63072 1.68465 1.93205 1.74213 1.96211 1.52069 1.23701 0.90388 0.97190 0.98785 1.24030 0.90647 0.94795 1.01465 1.23087 0.84921 0.89223 1.02396 1.21034 0.95724 0.85541 0.95274 0.92079 0.95487 0.93137 0.90996 0.91780 0.89161 0.89766 0.88998 0.88658 0.89019 0.89048 0.88536 0.89024 0.89741 0.89363 0.94889 0.95409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.47 13.01 55.49 0.72 -25.75 16 2 C -0.02 -0.63 5.10 -17.43 -0.09 -0.71 16 3 Si 1.06 24.56 30.00 -169.99 -5.10 19.46 16 4 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 5 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 6 H -0.29 -6.58 7.11 56.52 0.40 -6.17 16 7 C -0.34 -9.15 10.00 -15.06 -0.15 -9.30 16 8 H 0.06 1.71 7.97 -52.49 -0.42 1.29 16 9 N -0.60 -14.15 3.27 -170.19 -0.56 -14.71 16 10 C 0.15 3.09 5.41 -2.19 -0.01 3.08 16 11 C -0.11 -1.77 6.43 -25.00 -0.16 -1.93 16 12 C -0.10 -1.50 0.97 -154.71 -0.15 -1.65 16 13 C 0.12 1.43 7.85 -3.52 -0.03 1.40 16 14 N -0.63 -7.98 3.62 -185.68 -0.67 -8.66 16 15 C 0.60 7.97 8.17 -10.99 -0.09 7.88 16 16 O -0.54 -9.02 17.82 5.55 0.10 -8.92 16 17 C -0.15 -1.47 3.10 -172.27 -0.53 -2.01 16 18 C -0.07 -0.59 7.95 -24.70 -0.20 -0.79 16 19 C -0.22 -1.90 3.03 -169.85 -0.51 -2.42 16 20 C 0.52 4.82 3.63 37.16 0.13 4.96 16 21 F -0.18 -1.68 17.32 2.25 0.04 -1.64 16 22 F -0.17 -1.75 17.32 2.25 0.04 -1.71 16 23 F -0.18 -1.72 17.32 2.25 0.04 -1.68 16 24 C -0.06 -0.55 7.78 -26.72 -0.21 -0.76 16 25 C -0.07 -0.63 7.84 -26.00 -0.20 -0.83 16 26 C 0.13 1.60 8.16 -3.53 -0.03 1.57 16 27 C 0.15 2.77 6.75 -3.56 -0.02 2.75 16 28 H 0.27 7.73 6.19 -40.82 -0.25 7.47 16 29 H 0.03 0.61 6.80 -51.93 -0.35 0.26 16 30 H 0.05 1.20 8.08 -51.93 -0.42 0.78 16 31 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.06 0.93 8.06 -51.93 -0.42 0.51 16 33 H 0.09 1.00 8.00 -51.93 -0.42 0.58 16 34 H 0.08 0.98 7.63 -51.93 -0.40 0.58 16 35 H 0.09 0.68 7.91 -51.93 -0.41 0.27 16 36 H 0.10 0.73 7.97 -51.93 -0.41 0.31 16 37 H 0.09 0.77 7.94 -51.93 -0.41 0.36 16 38 H 0.09 0.75 7.91 -51.93 -0.41 0.33 16 39 H 0.10 0.81 7.48 -51.93 -0.39 0.42 16 40 H 0.09 0.77 7.93 -51.93 -0.41 0.35 16 41 H 0.08 1.09 8.12 -51.93 -0.42 0.67 16 42 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 43 H 0.03 0.61 8.09 -51.93 -0.42 0.18 16 44 H 0.03 0.52 7.86 -51.93 -0.41 0.11 16 LS Contribution 373.38 15.07 5.63 5.63 Total: -1.00 -31.45 373.38 -8.03 -39.48 By element: Atomic # 1 Polarization: 3.27 SS G_CDS: -6.01 Total: -2.74 kcal Atomic # 6 Polarization: 3.49 SS G_CDS: -2.25 Total: 1.24 kcal Atomic # 7 Polarization: -48.60 SS G_CDS: -0.51 Total: -49.11 kcal Atomic # 8 Polarization: -9.02 SS G_CDS: 0.10 Total: -8.92 kcal Atomic # 9 Polarization: -5.14 SS G_CDS: 0.12 Total: -5.03 kcal Atomic # 14 Polarization: 24.56 SS G_CDS: -5.10 Total: 19.46 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.45 -8.03 -39.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073459304.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.258 kcal (2) G-P(sol) polarization free energy of solvation -31.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds