Wall clock time and date at job start Wed Apr 1 2020 02:23:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38746 * 119.79046 * 2 1 4 4 C 1.37841 * 120.68691 * 180.02562 * 3 2 1 5 5 C 1.38943 * 119.81774 * 359.97438 * 4 3 2 6 6 O 1.34803 * 133.49781 * 180.02562 * 5 4 3 7 7 C 1.34446 * 110.89608 * 179.97438 * 6 5 4 8 8 C 1.34004 * 110.14982 * 359.97438 * 7 6 5 9 9 C 1.50699 * 126.90448 * 179.97438 * 8 7 6 10 10 C 1.50697 * 109.47328 * 265.02584 * 9 8 7 11 11 O 1.21280 * 119.99882 * 0.02562 * 10 9 8 12 12 N 1.34773 * 120.00213 * 180.02562 * 10 9 8 13 13 C 1.46497 * 120.00358 * 180.02562 * 12 10 9 14 14 H 1.09002 * 110.88566 * 37.42312 * 13 12 10 15 15 C 1.54908 * 111.00508 * 273.54558 * 13 12 10 16 16 N 1.47414 * 104.83427 * 204.87567 * 15 13 12 17 17 C 1.36941 * 125.65304 * 204.08670 * 16 15 13 18 18 H 1.08008 * 119.99381 * 6.65072 * 17 16 15 19 19 C 1.38812 * 120.00565 * 186.64665 * 17 16 15 20 20 N 1.31618 * 119.99440 * 7.38012 * 19 17 16 21 21 Si 1.86793 * 120.00104 * 187.37813 * 19 17 16 22 22 H 1.48507 * 109.47081 * 84.99136 * 21 19 17 23 23 H 1.48502 * 109.47308 * 324.99111 * 21 19 17 24 24 H 1.48499 * 109.47100 * 204.98882 * 21 19 17 25 25 C 1.47021 * 108.70498 * 24.35841 * 16 15 13 26 26 C 1.54340 * 107.26384 * 358.57942 * 25 16 15 27 27 H 1.09001 * 110.50937 * 96.45359 * 26 25 16 28 28 O 1.42896 * 111.00357 * 219.60371 * 26 25 16 29 29 C 1.40491 * 119.22264 * 0.27253 * 5 4 3 30 30 C 1.36738 * 119.79314 * 179.97438 * 2 1 3 31 31 H 1.08998 * 109.47119 * 90.00490 * 1 2 3 32 32 H 1.08996 * 109.47051 * 210.00259 * 1 2 3 33 33 H 1.08999 * 109.47151 * 330.00525 * 1 2 3 34 34 H 1.08000 * 119.65473 * 359.96966 * 3 2 1 35 35 H 1.08006 * 120.09470 * 180.02562 * 4 3 2 36 36 H 1.07999 * 124.92778 * 180.02562 * 7 6 5 37 37 H 1.09008 * 109.46674 * 145.02674 * 9 8 7 38 38 H 1.08996 * 109.47211 * 25.03273 * 9 8 7 39 39 H 0.97001 * 120.00113 * 359.97438 * 12 10 9 40 40 H 1.09003 * 110.36417 * 86.03498 * 15 13 12 41 41 H 1.09002 * 110.36545 * 323.71864 * 15 13 12 42 42 H 0.97004 * 119.99432 * 179.97438 * 20 19 17 43 43 H 1.09000 * 109.88851 * 118.12853 * 25 16 15 44 44 H 1.09007 * 109.88284 * 239.29575 * 25 16 15 45 45 H 0.96698 * 114.00012 * 293.78373 * 28 26 25 46 46 H 1.08000 * 120.13490 * 359.97438 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1963 1.2041 0.0000 4 6 3.5745 1.2257 -0.0005 5 6 4.2842 0.0311 -0.0005 6 8 5.5988 -0.2671 -0.0005 7 6 5.7885 -1.5981 0.0000 8 6 4.6082 -2.2327 0.0010 9 6 4.3818 -3.7225 0.0013 10 6 4.1835 -4.2009 -1.4139 11 8 4.2226 -3.4099 -2.3324 12 7 3.9625 -5.5076 -1.6589 13 6 3.7703 -5.9727 -3.0347 14 1 4.4206 -5.4318 -3.7222 15 6 2.2861 -5.8484 -3.4606 16 7 2.1139 -6.8522 -4.5263 17 6 1.1604 -6.8179 -5.5087 18 1 0.5215 -5.9531 -5.6110 19 6 1.0151 -7.8944 -6.3729 20 7 1.6901 -9.0042 -6.1608 21 14 -0.1383 -7.7679 -7.8367 22 1 0.5739 -7.1330 -8.9748 23 1 -1.3170 -6.9431 -7.4684 24 1 -0.5888 -9.1269 -8.2309 25 6 3.1313 -7.8998 -4.3562 26 6 3.9981 -7.5036 -3.1421 27 1 3.6487 -8.0096 -2.2421 28 8 5.3767 -7.7942 -3.3805 29 6 3.5804 -1.1848 -0.0058 30 6 2.1864 -1.1866 0.0005 31 1 -0.3633 -0.0001 -1.0276 32 1 -0.3633 -0.8899 0.5139 33 1 -0.3633 0.8900 0.5137 34 1 1.6473 2.1341 -0.0005 35 1 4.1014 2.1685 -0.0001 36 1 6.7524 -2.0853 0.0005 37 1 3.4950 -3.9551 0.5911 38 1 5.2480 -4.2216 0.4355 39 1 3.9316 -6.1403 -0.9243 40 1 2.0842 -4.8486 -3.8449 41 1 1.6301 -6.0720 -2.6193 42 1 1.5882 -9.7566 -6.7646 43 1 2.6483 -8.8594 -4.1719 44 1 3.7534 -7.9610 -5.2492 45 1 5.5724 -8.7382 -3.4557 46 1 1.6452 -2.1213 0.0014 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001077076594.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:23:49 Heat of formation + Delta-G solvation = -29.687335 kcal Electronic energy + Delta-G solvation = -29569.303030 eV Core-core repulsion = 25426.073205 eV Total energy + Delta-G solvation = -4143.229824 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.55519 -39.64258 -38.35179 -37.85648 -35.10663 -34.10250 -33.93426 -32.28362 -31.75689 -30.39721 -28.76969 -27.84780 -26.96072 -26.65990 -24.36983 -23.18121 -21.68099 -21.38802 -20.56948 -20.19445 -19.74453 -17.43361 -17.24643 -17.17853 -16.93006 -16.54750 -15.99671 -15.69116 -15.54747 -14.92795 -14.65210 -14.29298 -14.14204 -14.01846 -13.78435 -13.76797 -13.24047 -13.17500 -12.82195 -12.68959 -12.46225 -12.35568 -12.15237 -12.05235 -11.77955 -11.72451 -11.46002 -11.25251 -10.97599 -10.92268 -10.82218 -10.21212 -10.17657 -9.91813 -9.81402 -9.71590 -9.33209 -8.83471 -8.63968 -8.53016 -8.24275 -6.91309 -5.76942 -3.13121 0.82054 1.23711 2.17404 2.70380 2.81979 3.36350 3.39723 3.44625 3.45862 3.61492 4.28481 4.41337 4.42832 4.60233 4.66941 4.71432 4.85100 4.99942 5.12586 5.14437 5.19384 5.29387 5.30450 5.34023 5.42375 5.47022 5.54901 5.56317 5.66160 5.76208 5.80929 5.82381 6.06750 6.09469 6.11417 6.12850 6.29535 6.42870 6.52889 6.54079 6.62888 6.88910 7.06337 7.28493 7.45294 7.67860 7.73537 8.07023 8.16859 8.44079 9.13391 9.74187 10.37475 11.33573 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.012530 B = 0.002674 C = 0.002310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2234.097520 B =10470.031853 C =12119.929714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.103 4.103 3 C -0.096 4.096 4 C -0.104 4.104 5 C 0.045 3.955 6 O -0.193 6.193 7 C 0.019 3.981 8 C -0.156 4.156 9 C -0.069 4.069 10 C 0.510 3.490 11 O -0.527 6.527 12 N -0.717 5.717 13 C 0.140 3.860 14 H 0.100 0.900 15 C 0.131 3.869 16 N -0.599 5.599 17 C -0.229 4.229 18 H 0.080 0.920 19 C -0.007 4.007 20 N -0.923 5.923 21 Si 0.915 3.085 22 H -0.287 1.287 23 H -0.281 1.281 24 H -0.290 1.290 25 C 0.149 3.851 26 C 0.070 3.930 27 H 0.059 0.941 28 O -0.564 6.564 29 C -0.106 4.106 30 C -0.067 4.067 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.133 0.867 35 H 0.130 0.870 36 H 0.206 0.794 37 H 0.103 0.897 38 H 0.104 0.896 39 H 0.397 0.603 40 H 0.050 0.950 41 H 0.023 0.977 42 H 0.253 0.747 43 H 0.066 0.934 44 H 0.044 0.956 45 H 0.377 0.623 46 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.144 12.841 18.843 23.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.103 4.103 3 C -0.114 4.114 4 C -0.123 4.123 5 C -0.002 4.002 6 O -0.094 6.094 7 C -0.047 4.047 8 C -0.158 4.158 9 C -0.109 4.109 10 C 0.296 3.704 11 O -0.402 6.402 12 N -0.368 5.368 13 C 0.035 3.965 14 H 0.118 0.882 15 C 0.003 3.997 16 N -0.326 5.326 17 C -0.357 4.357 18 H 0.098 0.902 19 C -0.204 4.204 20 N -0.570 5.570 21 Si 0.745 3.255 22 H -0.214 1.214 23 H -0.206 1.206 24 H -0.217 1.217 25 C 0.023 3.977 26 C 0.010 3.990 27 H 0.076 0.924 28 O -0.369 6.369 29 C -0.107 4.107 30 C -0.086 4.086 31 H 0.090 0.910 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.150 0.850 35 H 0.148 0.852 36 H 0.223 0.777 37 H 0.121 0.879 38 H 0.122 0.878 39 H 0.231 0.769 40 H 0.068 0.932 41 H 0.040 0.960 42 H 0.063 0.937 43 H 0.084 0.916 44 H 0.063 0.937 45 H 0.223 0.777 46 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 5.335 14.134 18.013 23.510 hybrid contribution -0.621 -1.237 -0.568 1.496 sum 4.714 12.897 17.445 22.201 Atomic orbital electron populations 1.20761 0.90664 1.02712 1.02651 1.19511 0.96435 0.92644 1.01703 1.20775 0.92458 0.97928 1.00259 1.19872 0.93098 0.94559 1.04757 1.19570 0.81286 0.95532 1.03821 1.83984 1.24493 1.24578 1.76390 1.23673 0.99597 0.79655 1.01727 1.20393 0.91944 0.94231 1.09255 1.19980 1.04798 0.90831 0.95287 1.20475 0.76751 0.82257 0.90967 1.90749 1.49456 1.53931 1.46090 1.45925 1.73265 1.08325 1.09325 1.22206 0.98532 0.93433 0.82339 0.88157 1.21832 0.91622 0.94404 0.91820 1.44237 1.35159 1.22994 1.30231 1.19079 1.09918 1.01039 1.05652 0.90221 1.24812 1.00083 0.95588 0.99869 1.69910 1.45191 1.03462 1.38445 0.86092 0.80106 0.76718 0.82590 1.21430 1.20621 1.21663 1.21869 0.89470 0.93384 0.92955 1.23439 0.82219 0.94300 0.99057 0.92361 1.86460 1.25300 1.29662 1.95482 1.19676 0.94196 0.92207 1.04641 1.20137 0.91454 0.98182 0.98784 0.90972 0.91464 0.91553 0.84954 0.85171 0.77710 0.87855 0.87779 0.76950 0.93185 0.95980 0.93655 0.91612 0.93748 0.77654 0.85745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.92 10.00 36.00 0.36 -0.56 16 2 C -0.10 -1.11 5.85 -104.98 -0.61 -1.73 16 3 C -0.10 -0.95 9.66 -39.54 -0.38 -1.34 16 4 C -0.10 -1.14 10.07 -39.47 -0.40 -1.54 16 5 C 0.04 0.59 7.42 -38.47 -0.29 0.31 16 6 O -0.19 -2.49 10.58 3.93 0.04 -2.45 16 7 C 0.02 0.21 11.89 29.24 0.35 0.55 16 8 C -0.16 -1.92 4.85 -102.66 -0.50 -2.42 16 9 C -0.07 -0.70 6.25 -29.04 -0.18 -0.88 16 10 C 0.51 7.55 7.82 -10.99 -0.09 7.46 16 11 O -0.53 -10.40 15.78 5.56 0.09 -10.31 16 12 N -0.72 -10.21 5.23 -51.73 -0.27 -10.48 16 13 C 0.14 2.62 3.04 -65.79 -0.20 2.42 16 14 H 0.10 2.18 7.73 -51.93 -0.40 1.78 16 15 C 0.13 2.82 6.92 -2.54 -0.02 2.81 16 16 N -0.60 -15.41 3.39 -170.06 -0.58 -15.99 16 17 C -0.23 -6.45 10.26 -15.06 -0.15 -6.60 16 18 H 0.08 2.19 7.84 -52.48 -0.41 1.78 16 19 C -0.01 -0.20 5.45 -17.43 -0.09 -0.30 16 20 N -0.92 -26.69 10.48 55.49 0.58 -26.11 16 21 Si 0.91 22.19 29.56 -169.99 -5.02 17.17 16 22 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 23 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 24 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 25 C 0.15 3.51 5.21 -3.06 -0.02 3.50 16 26 C 0.07 1.26 3.94 -24.89 -0.10 1.17 16 27 H 0.06 0.92 8.00 -51.93 -0.42 0.50 16 28 O -0.56 -9.47 13.40 -35.23 -0.47 -9.94 16 29 C -0.11 -1.44 6.38 -105.16 -0.67 -2.11 16 30 C -0.07 -0.84 9.68 -39.69 -0.38 -1.23 16 31 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.07 0.51 8.08 -51.93 -0.42 0.09 16 33 H 0.07 0.43 8.08 -51.93 -0.42 0.01 16 34 H 0.13 0.93 8.06 -52.49 -0.42 0.50 16 35 H 0.13 1.10 8.06 -52.48 -0.42 0.68 16 36 H 0.21 1.47 8.06 -52.49 -0.42 1.05 16 37 H 0.10 0.85 8.14 -51.92 -0.42 0.43 16 38 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.40 4.26 8.52 -40.82 -0.35 3.92 16 40 H 0.05 1.15 8.14 -51.93 -0.42 0.72 16 41 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 43 H 0.07 1.68 6.99 -51.93 -0.36 1.32 16 44 H 0.04 1.17 7.83 -51.93 -0.41 0.77 16 45 H 0.38 4.74 9.12 45.56 0.42 5.16 16 46 H 0.12 1.43 8.06 -52.49 -0.42 1.00 16 LS Contribution 387.86 15.07 5.85 5.85 Total: -1.00 -36.35 387.86 -8.87 -45.22 By element: Atomic # 1 Polarization: 13.25 SS G_CDS: -5.71 Total: 7.54 kcal Atomic # 6 Polarization: 2.89 SS G_CDS: -3.37 Total: -0.48 kcal Atomic # 7 Polarization: -52.32 SS G_CDS: -0.27 Total: -52.59 kcal Atomic # 8 Polarization: -22.36 SS G_CDS: -0.34 Total: -22.71 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -36.35 -8.87 -45.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077076594.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.532 kcal (2) G-P(sol) polarization free energy of solvation -36.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds