Wall clock time and date at job start Wed Apr 1 2020 02:23:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38746 * 119.79046 * 2 1 4 4 C 1.37841 * 120.68691 * 180.02562 * 3 2 1 5 5 C 1.38943 * 119.81774 * 359.97438 * 4 3 2 6 6 O 1.34803 * 133.49781 * 180.02562 * 5 4 3 7 7 C 1.34446 * 110.89608 * 179.97438 * 6 5 4 8 8 C 1.34004 * 110.14982 * 359.97438 * 7 6 5 9 9 C 1.50699 * 126.90448 * 179.97438 * 8 7 6 10 10 C 1.50697 * 109.47328 * 265.02584 * 9 8 7 11 11 O 1.21280 * 119.99882 * 0.02562 * 10 9 8 12 12 N 1.34773 * 120.00213 * 180.02562 * 10 9 8 13 13 C 1.46497 * 120.00358 * 180.02562 * 12 10 9 14 14 H 1.09002 * 110.88566 * 37.42312 * 13 12 10 15 15 C 1.54908 * 111.00508 * 273.54558 * 13 12 10 16 16 N 1.47414 * 104.83427 * 204.87567 * 15 13 12 17 17 C 1.36941 * 125.65304 * 204.08670 * 16 15 13 18 18 H 1.08008 * 119.99381 * 6.65072 * 17 16 15 19 19 C 1.38812 * 120.00565 * 186.64665 * 17 16 15 20 20 N 1.31618 * 119.99440 * 7.38012 * 19 17 16 21 21 Si 1.86793 * 120.00104 * 187.37813 * 19 17 16 22 22 H 1.48507 * 109.47081 * 84.99136 * 21 19 17 23 23 H 1.48502 * 109.47308 * 324.99111 * 21 19 17 24 24 H 1.48499 * 109.47100 * 204.98882 * 21 19 17 25 25 C 1.47021 * 108.70498 * 24.35841 * 16 15 13 26 26 C 1.54340 * 107.26384 * 358.57942 * 25 16 15 27 27 H 1.09001 * 110.50937 * 96.45359 * 26 25 16 28 28 O 1.42896 * 111.00357 * 219.60371 * 26 25 16 29 29 C 1.40491 * 119.22264 * 0.27253 * 5 4 3 30 30 C 1.36738 * 119.79314 * 179.97438 * 2 1 3 31 31 H 1.08998 * 109.47119 * 90.00490 * 1 2 3 32 32 H 1.08996 * 109.47051 * 210.00259 * 1 2 3 33 33 H 1.08999 * 109.47151 * 330.00525 * 1 2 3 34 34 H 1.08000 * 119.65473 * 359.96966 * 3 2 1 35 35 H 1.08006 * 120.09470 * 180.02562 * 4 3 2 36 36 H 1.07999 * 124.92778 * 180.02562 * 7 6 5 37 37 H 1.09008 * 109.46674 * 145.02674 * 9 8 7 38 38 H 1.08996 * 109.47211 * 25.03273 * 9 8 7 39 39 H 0.97001 * 120.00113 * 359.97438 * 12 10 9 40 40 H 1.09003 * 110.36417 * 86.03498 * 15 13 12 41 41 H 1.09002 * 110.36545 * 323.71864 * 15 13 12 42 42 H 0.97004 * 119.99432 * 179.97438 * 20 19 17 43 43 H 1.09000 * 109.88851 * 118.12853 * 25 16 15 44 44 H 1.09007 * 109.88284 * 239.29575 * 25 16 15 45 45 H 0.96698 * 114.00012 * 293.78373 * 28 26 25 46 46 H 1.08000 * 120.13490 * 359.97438 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1963 1.2041 0.0000 4 6 3.5745 1.2257 -0.0005 5 6 4.2842 0.0311 -0.0005 6 8 5.5988 -0.2671 -0.0005 7 6 5.7885 -1.5981 0.0000 8 6 4.6082 -2.2327 0.0010 9 6 4.3818 -3.7225 0.0013 10 6 4.1835 -4.2009 -1.4139 11 8 4.2226 -3.4099 -2.3324 12 7 3.9625 -5.5076 -1.6589 13 6 3.7703 -5.9727 -3.0347 14 1 4.4206 -5.4318 -3.7222 15 6 2.2861 -5.8484 -3.4606 16 7 2.1139 -6.8522 -4.5263 17 6 1.1604 -6.8179 -5.5087 18 1 0.5215 -5.9531 -5.6110 19 6 1.0151 -7.8944 -6.3729 20 7 1.6901 -9.0042 -6.1608 21 14 -0.1383 -7.7679 -7.8367 22 1 0.5739 -7.1330 -8.9748 23 1 -1.3170 -6.9431 -7.4684 24 1 -0.5888 -9.1269 -8.2309 25 6 3.1313 -7.8998 -4.3562 26 6 3.9981 -7.5036 -3.1421 27 1 3.6487 -8.0096 -2.2421 28 8 5.3767 -7.7942 -3.3805 29 6 3.5804 -1.1848 -0.0058 30 6 2.1864 -1.1866 0.0005 31 1 -0.3633 -0.0001 -1.0276 32 1 -0.3633 -0.8899 0.5139 33 1 -0.3633 0.8900 0.5137 34 1 1.6473 2.1341 -0.0005 35 1 4.1014 2.1685 -0.0001 36 1 6.7524 -2.0853 0.0005 37 1 3.4950 -3.9551 0.5911 38 1 5.2480 -4.2216 0.4355 39 1 3.9316 -6.1403 -0.9243 40 1 2.0842 -4.8486 -3.8449 41 1 1.6301 -6.0720 -2.6193 42 1 1.5882 -9.7566 -6.7646 43 1 2.6483 -8.8594 -4.1719 44 1 3.7534 -7.9610 -5.2492 45 1 5.5724 -8.7382 -3.4557 46 1 1.6452 -2.1213 0.0014 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001077076594.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:23:48 Heat of formation + Delta-G solvation = -56.631571 kcal Electronic energy + Delta-G solvation = -29570.471419 eV Core-core repulsion = 25426.073205 eV Total energy + Delta-G solvation = -4144.398214 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.41125 -40.97576 -39.38852 -39.16055 -36.69264 -35.55557 -34.91333 -33.64169 -33.05725 -31.34879 -30.29147 -29.23838 -28.21807 -27.65885 -26.25017 -23.98594 -22.79025 -22.49786 -22.20827 -21.67928 -20.77878 -19.13209 -18.45696 -18.16232 -18.00218 -17.82292 -17.31006 -16.95937 -16.53160 -16.35531 -15.98656 -15.76703 -15.37438 -15.08642 -14.85745 -14.62814 -14.50943 -14.47781 -14.34284 -13.98837 -13.78272 -13.58841 -13.27098 -13.14021 -13.02217 -12.84042 -12.79044 -12.75150 -12.56293 -12.46164 -12.11723 -11.90778 -11.77697 -11.51329 -11.25702 -11.02551 -10.80411 -10.67449 -10.14918 -9.37906 -9.09145 -8.98462 -7.90726 -5.29947 -0.01332 0.37139 1.29300 1.43657 1.46766 1.54223 1.67394 1.89505 2.20337 2.46591 2.73270 3.11997 3.27936 3.48921 3.53691 3.59329 3.79874 3.88976 3.95175 4.01670 4.04139 4.14258 4.24903 4.37948 4.39364 4.43799 4.52792 4.56050 4.59787 4.62209 4.80063 4.83077 4.85357 4.97303 5.02205 5.16117 5.28174 5.29150 5.32914 5.42773 5.46913 5.48974 5.61796 5.62332 5.74418 6.11957 6.20699 6.60328 6.86170 7.01896 7.32115 7.66519 8.29248 9.17339 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.012530 B = 0.002674 C = 0.002310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2234.097520 B =10470.031853 C =12119.929714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.108 4.108 3 C -0.097 4.097 4 C -0.111 4.111 5 C 0.014 3.986 6 O -0.206 6.206 7 C 0.019 3.981 8 C -0.181 4.181 9 C -0.055 4.055 10 C 0.509 3.491 11 O -0.582 6.582 12 N -0.701 5.701 13 C 0.156 3.844 14 H 0.066 0.934 15 C 0.132 3.868 16 N -0.621 5.621 17 C -0.252 4.252 18 H 0.077 0.923 19 C -0.058 4.058 20 N -0.944 5.944 21 Si 0.979 3.021 22 H -0.288 1.288 23 H -0.269 1.269 24 H -0.288 1.288 25 C 0.155 3.845 26 C 0.095 3.905 27 H 0.098 0.902 28 O -0.568 6.568 29 C -0.132 4.132 30 C -0.093 4.093 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.087 0.913 34 H 0.164 0.836 35 H 0.151 0.849 36 H 0.242 0.758 37 H 0.127 0.873 38 H 0.146 0.854 39 H 0.419 0.581 40 H 0.027 0.973 41 H 0.040 0.960 42 H 0.250 0.750 43 H 0.044 0.956 44 H 0.004 0.996 45 H 0.397 0.603 46 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.134 13.170 20.868 25.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.108 4.108 3 C -0.115 4.115 4 C -0.129 4.129 5 C -0.033 4.033 6 O -0.107 6.107 7 C -0.045 4.045 8 C -0.183 4.183 9 C -0.094 4.094 10 C 0.297 3.703 11 O -0.461 6.461 12 N -0.354 5.354 13 C 0.049 3.951 14 H 0.084 0.916 15 C 0.005 3.995 16 N -0.349 5.349 17 C -0.380 4.380 18 H 0.095 0.905 19 C -0.252 4.252 20 N -0.592 5.592 21 Si 0.806 3.194 22 H -0.215 1.215 23 H -0.194 1.194 24 H -0.214 1.214 25 C 0.029 3.971 26 C 0.034 3.966 27 H 0.116 0.884 28 O -0.376 6.376 29 C -0.133 4.133 30 C -0.111 4.111 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.106 0.894 34 H 0.182 0.818 35 H 0.169 0.831 36 H 0.258 0.742 37 H 0.145 0.855 38 H 0.164 0.836 39 H 0.257 0.743 40 H 0.045 0.955 41 H 0.057 0.943 42 H 0.060 0.940 43 H 0.062 0.938 44 H 0.023 0.977 45 H 0.247 0.753 46 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 5.336 14.442 20.102 25.321 hybrid contribution -0.609 -1.278 -1.209 1.862 sum 4.727 13.164 18.893 23.507 Atomic orbital electron populations 1.20809 0.88932 1.04045 1.02844 1.19907 0.97839 0.92547 1.00480 1.21186 0.92300 0.98930 0.99099 1.20285 0.93725 0.94876 1.04021 1.20019 0.81561 0.96450 1.05265 1.83964 1.24537 1.25625 1.76604 1.24431 1.00915 0.79077 1.00123 1.20724 0.92016 0.95185 1.10333 1.20030 1.07718 0.89731 0.91949 1.21354 0.74975 0.81513 0.92422 1.90736 1.51786 1.55300 1.48281 1.45683 1.72806 1.08962 1.07943 1.21638 0.95563 0.93659 0.84280 0.91610 1.21899 0.94125 0.92262 0.91169 1.44504 1.35104 1.24425 1.30817 1.19399 1.10627 1.01128 1.06884 0.90522 1.25629 1.01872 0.95353 1.02326 1.70096 1.46281 1.03802 1.39053 0.85100 0.78472 0.76736 0.79047 1.21516 1.19410 1.21366 1.21715 0.89122 0.92281 0.93952 1.23106 0.82030 0.93757 0.97684 0.88448 1.86426 1.23931 1.31842 1.95382 1.20073 0.94969 0.93122 1.05114 1.20347 0.91481 0.99034 1.00262 0.91196 0.91055 0.89383 0.81823 0.83095 0.74213 0.85517 0.83576 0.74292 0.95457 0.94251 0.94022 0.93838 0.97728 0.75285 0.85667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.66 10.00 71.23 0.71 -0.95 16 2 C -0.11 -2.25 5.85 -20.10 -0.12 -2.37 16 3 C -0.10 -1.80 9.66 22.30 0.22 -1.59 16 4 C -0.11 -2.35 10.07 22.34 0.23 -2.13 16 5 C 0.01 0.36 7.42 22.99 0.17 0.53 16 6 O -0.21 -5.26 10.58 -8.84 -0.09 -5.35 16 7 C 0.02 0.40 11.89 66.86 0.79 1.20 16 8 C -0.18 -4.24 4.85 -18.59 -0.09 -4.33 16 9 C -0.06 -0.97 6.25 29.10 0.18 -0.79 16 10 C 0.51 14.35 7.82 87.66 0.69 15.04 16 11 O -0.58 -23.27 15.78 -3.03 -0.05 -23.32 16 12 N -0.70 -18.47 5.23 -435.98 -2.28 -20.75 16 13 C 0.16 5.75 3.04 46.38 0.14 5.89 16 14 H 0.07 2.93 7.73 -2.39 -0.02 2.91 16 15 C 0.13 5.78 6.92 86.86 0.60 6.38 16 16 N -0.62 -32.76 3.39 -691.96 -2.35 -35.11 16 17 C -0.25 -14.54 10.26 84.03 0.86 -13.68 16 18 H 0.08 4.33 7.84 -2.91 -0.02 4.30 16 19 C -0.06 -3.32 5.45 84.86 0.46 -2.86 16 20 N -0.94 -55.85 10.48 21.65 0.23 -55.62 16 21 Si 0.98 46.20 29.56 68.60 2.03 48.22 16 22 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 23 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 24 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 25 C 0.16 7.46 5.21 86.73 0.45 7.92 16 26 C 0.09 3.29 3.94 31.79 0.13 3.41 16 27 H 0.10 2.71 8.00 -2.39 -0.02 2.69 16 28 O -0.57 -18.05 13.40 -148.98 -2.00 -20.04 16 29 C -0.13 -3.58 6.38 -20.21 -0.13 -3.71 16 30 C -0.09 -2.33 9.68 22.20 0.21 -2.11 16 31 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.07 1.01 8.08 -2.39 -0.02 0.99 16 33 H 0.09 0.93 8.08 -2.39 -0.02 0.91 16 34 H 0.16 1.87 8.06 -2.91 -0.02 1.85 16 35 H 0.15 2.39 8.06 -2.91 -0.02 2.36 16 36 H 0.24 2.84 8.06 -2.91 -0.02 2.82 16 37 H 0.13 1.68 8.14 -2.38 -0.02 1.66 16 38 H 0.15 1.36 8.14 -2.39 -0.02 1.34 16 39 H 0.42 7.38 8.52 -92.71 -0.79 6.59 16 40 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 41 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 42 H 0.25 14.33 8.31 -92.71 -0.77 13.56 16 43 H 0.04 2.27 6.99 -2.39 -0.02 2.25 16 44 H 0.00 0.25 7.83 -2.38 -0.02 0.23 16 45 H 0.40 9.13 9.12 -74.06 -0.68 8.45 16 46 H 0.13 2.91 8.06 -2.91 -0.02 2.89 16 Total: -1.00 -83.80 387.86 0.56 -83.25 By element: Atomic # 1 Polarization: 23.30 SS G_CDS: -0.44 Total: 22.86 kcal Atomic # 6 Polarization: 0.35 SS G_CDS: 5.51 Total: 5.85 kcal Atomic # 7 Polarization: -107.08 SS G_CDS: -4.40 Total: -111.48 kcal Atomic # 8 Polarization: -46.57 SS G_CDS: -2.14 Total: -48.71 kcal Atomic # 14 Polarization: 46.20 SS G_CDS: 2.03 Total: 48.22 kcal Total: -83.80 0.56 -83.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077076594.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.617 kcal (2) G-P(sol) polarization free energy of solvation -83.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds