Wall clock time and date at job start Wed Apr 1 2020 02:43:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42902 * 114.00049 * 2 1 4 4 H 1.08996 * 110.77568 * 26.76126 * 3 2 1 5 5 C 1.54327 * 110.71952 * 263.52409 * 3 2 1 6 6 N 1.47024 * 107.26774 * 219.44251 * 5 3 2 7 7 C 1.36941 * 125.64618 * 179.20447 * 6 5 3 8 8 H 1.08005 * 119.99780 * 179.68989 * 7 6 5 9 9 C 1.38813 * 119.99913 * 359.69358 * 7 6 5 10 10 N 1.31616 * 119.99926 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 119.99719 * 180.02562 * 9 7 6 12 12 H 1.48493 * 109.47341 * 89.99896 * 11 9 7 13 13 H 1.48503 * 109.46756 * 209.99724 * 11 9 7 14 14 H 1.48496 * 109.46957 * 329.99498 * 11 9 7 15 15 C 1.47426 * 108.70449 * 358.94057 * 6 5 3 16 16 C 1.54912 * 104.83261 * 24.12870 * 15 6 5 17 17 H 1.08997 * 111.00012 * 81.06132 * 16 15 6 18 18 N 1.46494 * 111.00232 * 204.91520 * 16 15 6 19 19 C 1.34774 * 120.00193 * 273.54394 * 18 16 15 20 20 O 1.21653 * 119.99852 * 0.02562 * 19 18 16 21 21 C 1.47079 * 120.00282 * 180.02562 * 19 18 16 22 22 C 1.36054 * 127.13815 * 359.68766 * 21 19 18 23 23 O 1.33801 * 109.86094 * 179.86282 * 22 21 19 24 24 C 1.34910 * 111.35080 * 0.42161 * 23 22 21 25 25 C 1.40268 * 107.62208 * 359.74583 * 24 23 22 26 26 C 1.39070 * 120.29054 * 179.97438 * 25 24 23 27 27 C 1.37885 * 119.62323 * 0.02562 * 26 25 24 28 28 C 1.38644 * 120.20296 * 0.02562 * 27 26 25 29 29 C 1.37882 * 120.65678 * 359.97411 * 28 27 26 30 30 C 1.50695 * 120.01383 * 180.02562 * 29 28 27 31 31 H 1.09007 * 109.46716 * 60.00154 * 1 2 3 32 32 H 1.09001 * 109.46773 * 179.97438 * 1 2 3 33 33 H 1.08993 * 109.47024 * 299.99860 * 1 2 3 34 34 H 1.08995 * 109.88184 * 100.02675 * 5 3 2 35 35 H 1.09002 * 109.88385 * 338.85682 * 5 3 2 36 36 H 0.97001 * 119.99407 * 180.02562 * 10 9 7 37 37 H 1.09002 * 110.36518 * 142.96440 * 15 6 5 38 38 H 1.08995 * 110.36673 * 265.17549 * 15 6 5 39 39 H 0.97002 * 119.99809 * 93.54560 * 18 16 15 40 40 H 1.08008 * 125.07029 * 0.02562 * 22 21 19 41 41 H 1.07987 * 120.18821 * 180.02562 * 26 25 24 42 42 H 1.08005 * 119.89934 * 179.97438 * 27 26 25 43 43 H 1.08001 * 119.66976 * 179.97438 * 28 27 26 44 44 H 1.09003 * 109.46941 * 90.00273 * 30 29 28 45 45 H 1.08998 * 109.47153 * 209.99899 * 30 29 28 46 46 H 1.08993 * 109.47227 * 329.99984 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3362 2.0288 0.4589 5 6 2.3811 1.7380 -1.4342 6 7 3.6685 2.4439 -1.3581 7 6 4.3519 2.9743 -2.4197 8 1 5.2921 3.4806 -2.2580 9 6 3.8362 2.8611 -3.7035 10 7 2.6906 2.2437 -3.9004 11 14 4.7688 3.5839 -5.1517 12 1 5.6966 2.5635 -5.7020 13 1 3.8059 3.9965 -6.2043 14 1 5.5450 4.7665 -4.6999 15 6 4.0988 2.4918 0.0512 16 6 3.3816 1.2958 0.7256 17 1 3.9158 0.3642 0.5389 18 7 3.2168 1.5251 2.1631 19 6 4.2041 1.1890 3.0167 20 8 5.2323 0.6954 2.5935 21 6 4.0384 1.4187 4.4600 22 6 2.9602 1.9627 5.0867 23 8 3.1762 2.0073 6.4064 24 6 4.3911 1.5130 6.7223 25 6 5.0101 1.1128 5.5289 26 6 6.2862 0.5604 5.5515 27 6 6.9413 0.4072 6.7551 28 6 6.3313 0.8010 7.9362 29 6 5.0665 1.3498 7.9253 30 6 4.4174 1.7733 9.2177 31 1 -0.3633 0.5139 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8899 34 1 1.6153 2.4052 -1.8298 35 1 2.4769 0.8601 -2.0732 36 1 2.3305 2.1643 -4.7976 37 1 5.1802 2.3745 0.1218 38 1 3.7889 3.4303 0.5107 39 1 2.3971 1.9190 2.5005 40 1 2.0627 2.3049 4.5929 41 1 6.7613 0.2532 4.6317 42 1 7.9323 -0.0217 6.7779 43 1 6.8521 0.6766 8.8742 44 1 4.6686 2.8132 9.4267 45 1 3.3356 1.6712 9.1315 46 1 4.7784 1.1421 10.0296 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001081803208.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:43:39 Heat of formation + Delta-G solvation = -17.879602 kcal Electronic energy + Delta-G solvation = -29672.559964 eV Core-core repulsion = 25529.842161 eV Total energy + Delta-G solvation = -4142.717803 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.82142 -39.59578 -38.32972 -38.06771 -35.92060 -34.13375 -33.79870 -32.07530 -31.44355 -29.87211 -28.72976 -27.18309 -27.11985 -26.14335 -24.61859 -23.60137 -22.58366 -22.34202 -20.60033 -20.32852 -19.67178 -18.11205 -17.44288 -17.01794 -16.56926 -16.46014 -15.97163 -15.73765 -15.47937 -14.81979 -14.57506 -14.55080 -14.44506 -14.20244 -13.91338 -13.77378 -13.50073 -13.24859 -12.99118 -12.77675 -12.63107 -12.31048 -12.13031 -11.94321 -11.89493 -11.60822 -11.25057 -11.19535 -11.02573 -10.80869 -10.78053 -10.19254 -10.17004 -10.03849 -9.90738 -9.79099 -9.15016 -8.87658 -8.81969 -8.61403 -8.34646 -6.89901 -5.74148 -3.09075 0.53598 1.08420 1.57923 2.37651 3.16251 3.22602 3.40824 3.45773 3.47366 3.58668 4.09722 4.13679 4.32572 4.49573 4.50817 4.60896 4.95943 4.99325 5.07711 5.13159 5.18856 5.22201 5.27620 5.34187 5.47192 5.50697 5.53661 5.60895 5.62490 5.68907 5.82259 5.89033 5.94716 6.03184 6.06198 6.12784 6.15780 6.26476 6.36248 6.48594 6.63213 6.81063 6.82867 7.23115 7.45950 7.61151 7.69954 7.84235 8.19133 8.33769 9.16858 9.76836 10.39684 11.37381 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.017000 B = 0.002457 C = 0.002258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1646.674078 B =11394.024928 C =12395.365574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.377 6.377 3 C 0.056 3.944 4 H 0.063 0.937 5 C 0.165 3.835 6 N -0.600 5.600 7 C -0.228 4.228 8 H 0.081 0.919 9 C -0.007 4.007 10 N -0.923 5.923 11 Si 0.915 3.085 12 H -0.288 1.288 13 H -0.290 1.290 14 H -0.281 1.281 15 C 0.131 3.869 16 C 0.135 3.865 17 H 0.106 0.894 18 N -0.712 5.712 19 C 0.586 3.414 20 O -0.528 6.528 21 C -0.218 4.218 22 C 0.060 3.940 23 O -0.182 6.182 24 C 0.046 3.954 25 C -0.088 4.088 26 C -0.064 4.064 27 C -0.130 4.130 28 C -0.098 4.098 29 C -0.075 4.075 30 C -0.112 4.112 31 H 0.045 0.955 32 H 0.079 0.921 33 H 0.033 0.967 34 H 0.049 0.951 35 H 0.063 0.937 36 H 0.253 0.747 37 H 0.052 0.948 38 H 0.023 0.977 39 H 0.392 0.608 40 H 0.216 0.784 41 H 0.139 0.861 42 H 0.132 0.868 43 H 0.135 0.865 44 H 0.072 0.928 45 H 0.067 0.933 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.110 -1.898 25.029 25.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.295 6.295 3 C -0.003 4.003 4 H 0.081 0.919 5 C 0.040 3.960 6 N -0.328 5.328 7 C -0.356 4.356 8 H 0.099 0.901 9 C -0.204 4.204 10 N -0.570 5.570 11 Si 0.745 3.255 12 H -0.215 1.215 13 H -0.217 1.217 14 H -0.206 1.206 15 C 0.003 3.997 16 C 0.030 3.970 17 H 0.124 0.876 18 N -0.362 5.362 19 C 0.373 3.627 20 O -0.405 6.405 21 C -0.223 4.223 22 C -0.008 4.008 23 O -0.082 6.082 24 C -0.001 4.001 25 C -0.089 4.089 26 C -0.082 4.082 27 C -0.148 4.148 28 C -0.116 4.116 29 C -0.075 4.075 30 C -0.168 4.168 31 H 0.064 0.936 32 H 0.098 0.902 33 H 0.051 0.949 34 H 0.067 0.933 35 H 0.081 0.919 36 H 0.063 0.937 37 H 0.070 0.930 38 H 0.041 0.959 39 H 0.226 0.774 40 H 0.233 0.767 41 H 0.157 0.843 42 H 0.150 0.850 43 H 0.153 0.847 44 H 0.090 0.910 45 H 0.086 0.914 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -1.460 -2.317 24.677 24.828 hybrid contribution -0.299 0.777 -0.915 1.237 sum -1.759 -1.539 23.762 23.876 Atomic orbital electron populations 1.22715 0.81715 1.02111 0.99730 1.87922 1.19091 1.27497 1.95038 1.23849 0.92800 0.84097 0.99596 0.91869 1.21562 0.88260 0.97303 0.88881 1.44262 1.21456 1.66390 1.00706 1.19079 1.02529 1.29281 0.84693 0.90129 1.24820 0.97444 1.00699 0.97407 1.69935 1.19358 1.47126 1.20613 0.86072 0.78618 0.78613 0.82188 1.21472 1.21675 1.20641 1.21826 0.97964 0.93710 0.86176 1.22418 0.96566 1.01101 0.76901 0.87599 1.45783 1.18705 1.64168 1.07551 1.17047 0.83682 0.78228 0.83769 1.90807 1.27712 1.43588 1.78349 1.21095 0.96216 1.10666 0.94301 1.24450 0.99157 0.97021 0.80175 1.83818 1.32317 1.67651 1.24402 1.19359 0.84416 1.01189 0.95124 1.19412 0.95894 1.02799 0.90823 1.20756 0.92212 0.96102 0.99086 1.21108 1.00524 1.01372 0.91767 1.20842 0.93223 0.98610 0.98878 1.18764 0.94423 1.02758 0.91566 1.20732 1.00768 1.01771 0.93554 0.93600 0.90205 0.94866 0.93314 0.91873 0.93654 0.93008 0.95940 0.77396 0.76744 0.84270 0.85011 0.84746 0.90954 0.91376 0.91053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 10.85 101.05 1.10 1.56 16 2 O -0.38 -6.79 10.43 -35.23 -0.37 -7.16 16 3 C 0.06 1.03 3.07 -24.90 -0.08 0.95 16 4 H 0.06 1.00 7.68 -51.93 -0.40 0.60 16 5 C 0.17 3.98 5.15 -3.06 -0.02 3.96 16 6 N -0.60 -15.44 3.39 -170.07 -0.58 -16.01 16 7 C -0.23 -6.40 10.28 -15.06 -0.15 -6.55 16 8 H 0.08 2.20 7.83 -52.48 -0.41 1.78 16 9 C -0.01 -0.21 5.49 -17.43 -0.10 -0.31 16 10 N -0.92 -26.95 10.31 55.49 0.57 -26.38 16 11 Si 0.91 22.21 29.55 -169.99 -5.02 17.19 16 12 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 13 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 14 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 15 C 0.13 2.80 6.93 -2.53 -0.02 2.79 16 16 C 0.14 2.52 3.04 -65.78 -0.20 2.32 16 17 H 0.11 2.26 7.73 -51.93 -0.40 1.86 16 18 N -0.71 -10.37 5.22 -52.91 -0.28 -10.64 16 19 C 0.59 9.37 7.80 -12.68 -0.10 9.27 16 20 O -0.53 -10.49 16.03 5.23 0.08 -10.41 16 21 C -0.22 -2.88 6.31 -103.25 -0.65 -3.53 16 22 C 0.06 0.58 11.52 29.95 0.34 0.92 16 23 O -0.18 -1.96 10.53 5.34 0.06 -1.90 16 24 C 0.05 0.54 7.05 -38.56 -0.27 0.26 16 25 C -0.09 -1.19 6.29 -104.98 -0.66 -1.85 16 26 C -0.06 -0.81 9.88 -39.40 -0.39 -1.20 16 27 C -0.13 -1.26 10.04 -39.56 -0.40 -1.66 16 28 C -0.10 -0.84 9.66 -39.56 -0.38 -1.22 16 29 C -0.07 -0.72 5.89 -104.50 -0.62 -1.33 16 30 C -0.11 -0.75 10.01 36.00 0.36 -0.39 16 31 H 0.05 0.64 8.14 -51.92 -0.42 0.22 16 32 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.03 0.37 8.11 -51.93 -0.42 -0.05 16 34 H 0.05 1.26 7.51 -51.93 -0.39 0.87 16 35 H 0.06 1.73 7.29 -51.93 -0.38 1.36 16 36 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 37 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 39 H 0.39 4.21 7.44 -40.82 -0.30 3.91 16 40 H 0.22 1.08 7.41 -52.48 -0.39 0.69 16 41 H 0.14 1.89 7.54 -52.49 -0.40 1.50 16 42 H 0.13 0.95 8.06 -52.48 -0.42 0.53 16 43 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 44 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 45 H 0.07 0.47 8.09 -51.93 -0.42 0.05 16 46 H 0.07 0.36 8.08 -51.93 -0.42 -0.06 16 LS Contribution 385.88 15.07 5.82 5.82 Total: -1.00 -34.93 385.88 -8.37 -43.30 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: -6.42 Total: 2.21 kcal Atomic # 6 Polarization: 6.21 SS G_CDS: -2.22 Total: 3.99 kcal Atomic # 7 Polarization: -52.75 SS G_CDS: -0.28 Total: -53.03 kcal Atomic # 8 Polarization: -19.24 SS G_CDS: -0.23 Total: -19.47 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -34.93 -8.37 -43.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001081803208.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.418 kcal (2) G-P(sol) polarization free energy of solvation -34.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds