Wall clock time and date at job start Wed Apr 1 2020 02:43:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42902 * 114.00049 * 2 1 4 4 H 1.08996 * 110.77568 * 26.76126 * 3 2 1 5 5 C 1.54327 * 110.71952 * 263.52409 * 3 2 1 6 6 N 1.47024 * 107.26774 * 219.44251 * 5 3 2 7 7 C 1.36941 * 125.64618 * 179.20447 * 6 5 3 8 8 H 1.08005 * 119.99780 * 179.68989 * 7 6 5 9 9 C 1.38813 * 119.99913 * 359.69358 * 7 6 5 10 10 N 1.31616 * 119.99926 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 119.99719 * 180.02562 * 9 7 6 12 12 H 1.48493 * 109.47341 * 89.99896 * 11 9 7 13 13 H 1.48503 * 109.46756 * 209.99724 * 11 9 7 14 14 H 1.48496 * 109.46957 * 329.99498 * 11 9 7 15 15 C 1.47426 * 108.70449 * 358.94057 * 6 5 3 16 16 C 1.54912 * 104.83261 * 24.12870 * 15 6 5 17 17 H 1.08997 * 111.00012 * 81.06132 * 16 15 6 18 18 N 1.46494 * 111.00232 * 204.91520 * 16 15 6 19 19 C 1.34774 * 120.00193 * 273.54394 * 18 16 15 20 20 O 1.21653 * 119.99852 * 0.02562 * 19 18 16 21 21 C 1.47079 * 120.00282 * 180.02562 * 19 18 16 22 22 C 1.36054 * 127.13815 * 359.68766 * 21 19 18 23 23 O 1.33801 * 109.86094 * 179.86282 * 22 21 19 24 24 C 1.34910 * 111.35080 * 0.42161 * 23 22 21 25 25 C 1.40268 * 107.62208 * 359.74583 * 24 23 22 26 26 C 1.39070 * 120.29054 * 179.97438 * 25 24 23 27 27 C 1.37885 * 119.62323 * 0.02562 * 26 25 24 28 28 C 1.38644 * 120.20296 * 0.02562 * 27 26 25 29 29 C 1.37882 * 120.65678 * 359.97411 * 28 27 26 30 30 C 1.50695 * 120.01383 * 180.02562 * 29 28 27 31 31 H 1.09007 * 109.46716 * 60.00154 * 1 2 3 32 32 H 1.09001 * 109.46773 * 179.97438 * 1 2 3 33 33 H 1.08993 * 109.47024 * 299.99860 * 1 2 3 34 34 H 1.08995 * 109.88184 * 100.02675 * 5 3 2 35 35 H 1.09002 * 109.88385 * 338.85682 * 5 3 2 36 36 H 0.97001 * 119.99407 * 180.02562 * 10 9 7 37 37 H 1.09002 * 110.36518 * 142.96440 * 15 6 5 38 38 H 1.08995 * 110.36673 * 265.17549 * 15 6 5 39 39 H 0.97002 * 119.99809 * 93.54560 * 18 16 15 40 40 H 1.08008 * 125.07029 * 0.02562 * 22 21 19 41 41 H 1.07987 * 120.18821 * 180.02562 * 26 25 24 42 42 H 1.08005 * 119.89934 * 179.97438 * 27 26 25 43 43 H 1.08001 * 119.66976 * 179.97438 * 28 27 26 44 44 H 1.09003 * 109.46941 * 90.00273 * 30 29 28 45 45 H 1.08998 * 109.47153 * 209.99899 * 30 29 28 46 46 H 1.08993 * 109.47227 * 329.99984 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3362 2.0288 0.4589 5 6 2.3811 1.7380 -1.4342 6 7 3.6685 2.4439 -1.3581 7 6 4.3519 2.9743 -2.4197 8 1 5.2921 3.4806 -2.2580 9 6 3.8362 2.8611 -3.7035 10 7 2.6906 2.2437 -3.9004 11 14 4.7688 3.5839 -5.1517 12 1 5.6966 2.5635 -5.7020 13 1 3.8059 3.9965 -6.2043 14 1 5.5450 4.7665 -4.6999 15 6 4.0988 2.4918 0.0512 16 6 3.3816 1.2958 0.7256 17 1 3.9158 0.3642 0.5389 18 7 3.2168 1.5251 2.1631 19 6 4.2041 1.1890 3.0167 20 8 5.2323 0.6954 2.5935 21 6 4.0384 1.4187 4.4600 22 6 2.9602 1.9627 5.0867 23 8 3.1762 2.0073 6.4064 24 6 4.3911 1.5130 6.7223 25 6 5.0101 1.1128 5.5289 26 6 6.2862 0.5604 5.5515 27 6 6.9413 0.4072 6.7551 28 6 6.3313 0.8010 7.9362 29 6 5.0665 1.3498 7.9253 30 6 4.4174 1.7733 9.2177 31 1 -0.3633 0.5139 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8899 34 1 1.6153 2.4052 -1.8298 35 1 2.4769 0.8601 -2.0732 36 1 2.3305 2.1643 -4.7976 37 1 5.1802 2.3745 0.1218 38 1 3.7889 3.4303 0.5107 39 1 2.3971 1.9190 2.5005 40 1 2.0627 2.3049 4.5929 41 1 6.7613 0.2532 4.6317 42 1 7.9323 -0.0217 6.7779 43 1 6.8521 0.6766 8.8742 44 1 4.6686 2.8132 9.4267 45 1 3.3356 1.6712 9.1315 46 1 4.7784 1.1421 10.0296 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001081803208.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:43:38 Heat of formation + Delta-G solvation = -42.260000 kcal Electronic energy + Delta-G solvation = -29673.617177 eV Core-core repulsion = 25529.842161 eV Total energy + Delta-G solvation = -4143.775016 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.65467 -41.00017 -39.54175 -39.08003 -37.51407 -35.69252 -34.65678 -33.74882 -32.48790 -30.92587 -30.29203 -28.81841 -27.79313 -27.51860 -26.27231 -24.77886 -23.40317 -23.29919 -22.27821 -21.91861 -20.90474 -19.25292 -18.84132 -18.23311 -17.80775 -17.40082 -17.30092 -16.91775 -16.69289 -16.31696 -15.90634 -15.81098 -15.72302 -15.32316 -15.17757 -15.01106 -14.54157 -14.32503 -14.31675 -14.05951 -13.78105 -13.62269 -13.24256 -13.21602 -13.01178 -12.87043 -12.76495 -12.61708 -12.54992 -12.31786 -12.08500 -11.99030 -11.88102 -11.66021 -11.24783 -11.06624 -10.78930 -10.59837 -10.19588 -9.66846 -9.16743 -8.98319 -7.89097 -5.27145 -0.27471 0.27334 0.66982 1.44532 1.47321 1.55575 1.59853 1.91142 2.15494 2.45296 2.70031 2.75964 3.30144 3.37841 3.41881 3.49965 3.70705 3.79233 3.89795 3.96657 4.04082 4.19428 4.30510 4.32241 4.36717 4.44651 4.45284 4.58705 4.60048 4.66056 4.80468 4.81427 4.83884 4.89329 4.95375 4.99714 5.27372 5.28527 5.31262 5.35248 5.40623 5.41938 5.48758 5.57071 5.64834 6.02517 6.12238 6.31481 6.46907 7.03483 7.14820 7.68029 8.30355 9.20391 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.017000 B = 0.002457 C = 0.002258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1646.674078 B =11394.024928 C =12395.365574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.398 6.398 3 C 0.079 3.921 4 H 0.104 0.896 5 C 0.174 3.826 6 N -0.622 5.622 7 C -0.247 4.247 8 H 0.081 0.919 9 C -0.062 4.062 10 N -0.948 5.948 11 Si 0.981 3.019 12 H -0.288 1.288 13 H -0.289 1.289 14 H -0.268 1.268 15 C 0.132 3.868 16 C 0.153 3.847 17 H 0.072 0.928 18 N -0.693 5.693 19 C 0.588 3.412 20 O -0.580 6.580 21 C -0.264 4.264 22 C 0.105 3.895 23 O -0.177 6.177 24 C 0.027 3.973 25 C -0.115 4.115 26 C -0.103 4.103 27 C -0.121 4.121 28 C -0.097 4.097 29 C -0.072 4.072 30 C -0.110 4.110 31 H 0.035 0.965 32 H 0.099 0.901 33 H 0.069 0.931 34 H 0.025 0.975 35 H 0.017 0.983 36 H 0.249 0.751 37 H 0.031 0.969 38 H 0.044 0.956 39 H 0.416 0.584 40 H 0.267 0.733 41 H 0.112 0.888 42 H 0.154 0.846 43 H 0.172 0.828 44 H 0.082 0.918 45 H 0.067 0.933 46 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.476 -0.814 28.478 28.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.317 6.317 3 C 0.019 3.981 4 H 0.122 0.878 5 C 0.048 3.952 6 N -0.350 5.350 7 C -0.376 4.376 8 H 0.099 0.901 9 C -0.255 4.255 10 N -0.597 5.597 11 Si 0.809 3.191 12 H -0.215 1.215 13 H -0.215 1.215 14 H -0.193 1.193 15 C 0.005 3.995 16 C 0.047 3.953 17 H 0.090 0.910 18 N -0.345 5.345 19 C 0.378 3.622 20 O -0.460 6.460 21 C -0.269 4.269 22 C 0.037 3.963 23 O -0.076 6.076 24 C -0.019 4.019 25 C -0.117 4.117 26 C -0.121 4.121 27 C -0.138 4.138 28 C -0.114 4.114 29 C -0.073 4.073 30 C -0.166 4.166 31 H 0.054 0.946 32 H 0.117 0.883 33 H 0.087 0.913 34 H 0.043 0.957 35 H 0.035 0.965 36 H 0.059 0.941 37 H 0.049 0.951 38 H 0.061 0.939 39 H 0.254 0.746 40 H 0.282 0.718 41 H 0.131 0.869 42 H 0.171 0.829 43 H 0.190 0.810 44 H 0.101 0.899 45 H 0.086 0.914 46 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -2.859 -1.217 28.189 28.360 hybrid contribution 0.128 0.406 -1.885 1.932 sum -2.731 -0.812 26.304 26.458 Atomic orbital electron populations 1.23016 0.79160 1.03919 1.00979 1.87909 1.21918 1.26927 1.94923 1.23485 0.93345 0.85444 0.95781 0.87846 1.21309 0.87117 0.94736 0.91989 1.44525 1.22153 1.66323 1.01954 1.19431 1.02882 1.29357 0.85923 0.90113 1.25671 0.98472 1.01419 0.99929 1.70152 1.20639 1.48144 1.20718 0.85044 0.77317 0.78073 0.78675 1.21519 1.21521 1.19288 1.21912 0.97155 0.95747 0.84699 1.21821 0.96046 0.98240 0.79205 0.90983 1.45417 1.19606 1.64096 1.05428 1.17451 0.82827 0.76937 0.85019 1.90781 1.29854 1.45992 1.79395 1.20852 0.98538 1.14920 0.92569 1.25293 0.98821 0.92724 0.79484 1.83849 1.31878 1.67168 1.24728 1.19632 0.84782 1.02223 0.95289 1.19714 0.96441 1.03555 0.91951 1.20754 0.93102 0.98814 0.99431 1.21425 1.01176 1.00034 0.91207 1.21283 0.93007 0.97410 0.99712 1.19281 0.94560 1.01347 0.92090 1.20810 1.00546 1.02769 0.92491 0.94579 0.88298 0.91255 0.95653 0.96474 0.94140 0.95056 0.93853 0.74605 0.71785 0.86942 0.82852 0.81022 0.89914 0.91439 0.88818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.63 10.85 113.37 1.23 1.86 16 2 O -0.40 -14.06 10.43 -148.98 -1.55 -15.61 16 3 C 0.08 2.86 3.07 31.78 0.10 2.96 16 4 H 0.10 2.95 7.68 -2.39 -0.02 2.93 16 5 C 0.17 8.68 5.15 86.73 0.45 9.13 16 6 N -0.62 -33.11 3.39 -691.97 -2.35 -35.46 16 7 C -0.25 -14.33 10.28 84.03 0.86 -13.47 16 8 H 0.08 4.53 7.83 -2.91 -0.02 4.51 16 9 C -0.06 -3.57 5.49 84.86 0.47 -3.10 16 10 N -0.95 -57.38 10.31 21.65 0.22 -57.16 16 11 Si 0.98 46.62 29.55 68.60 2.03 48.65 16 12 H -0.29 -13.63 7.11 99.48 0.71 -12.93 16 13 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 14 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 15 C 0.13 5.78 6.93 86.86 0.60 6.38 16 16 C 0.15 5.80 3.04 46.38 0.14 5.94 16 17 H 0.07 3.25 7.73 -2.39 -0.02 3.24 16 18 N -0.69 -19.44 5.22 -439.55 -2.29 -21.74 16 19 C 0.59 19.11 7.80 86.56 0.68 19.79 16 20 O -0.58 -24.66 16.03 -4.20 -0.07 -24.73 16 21 C -0.26 -6.83 6.31 -18.98 -0.12 -6.95 16 22 C 0.11 1.70 11.52 67.31 0.78 2.47 16 23 O -0.18 -3.30 10.53 -3.80 -0.04 -3.34 16 24 C 0.03 0.59 7.05 22.93 0.16 0.75 16 25 C -0.12 -3.15 6.29 -20.10 -0.13 -3.27 16 26 C -0.10 -2.76 9.88 22.39 0.22 -2.54 16 27 C -0.12 -2.27 10.04 22.28 0.22 -2.04 16 28 C -0.10 -1.41 9.66 22.28 0.22 -1.19 16 29 C -0.07 -1.21 5.89 -19.78 -0.12 -1.33 16 30 C -0.11 -1.08 10.01 71.23 0.71 -0.37 16 31 H 0.04 0.97 8.14 -2.38 -0.02 0.95 16 32 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 33 H 0.07 1.25 8.11 -2.39 -0.02 1.23 16 34 H 0.03 1.36 7.51 -2.39 -0.02 1.34 16 35 H 0.02 0.99 7.29 -2.39 -0.02 0.98 16 36 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 37 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 39 H 0.42 7.50 7.44 -92.71 -0.69 6.82 16 40 H 0.27 1.17 7.41 -2.91 -0.02 1.15 16 41 H 0.11 3.49 7.54 -2.92 -0.02 3.47 16 42 H 0.15 2.05 8.06 -2.91 -0.02 2.03 16 43 H 0.17 1.17 8.06 -2.91 -0.02 1.15 16 44 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 45 H 0.07 0.70 8.09 -2.39 -0.02 0.68 16 46 H 0.09 0.52 8.08 -2.39 -0.02 0.51 16 Total: -1.00 -83.55 385.88 2.73 -80.81 By element: Atomic # 1 Polarization: 13.25 SS G_CDS: 0.32 Total: 13.57 kcal Atomic # 6 Polarization: 8.54 SS G_CDS: 6.47 Total: 15.01 kcal Atomic # 7 Polarization: -109.94 SS G_CDS: -4.42 Total: -114.36 kcal Atomic # 8 Polarization: -42.02 SS G_CDS: -1.66 Total: -43.68 kcal Atomic # 14 Polarization: 46.62 SS G_CDS: 2.03 Total: 48.65 kcal Total: -83.55 2.73 -80.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001081803208.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.554 kcal (2) G-P(sol) polarization free energy of solvation -83.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds