Wall clock time and date at job start Wed Apr 1 2020 02:16:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42900 * 114.00164 * 2 1 4 4 H 1.09002 * 110.78222 * 26.75904 * 3 2 1 5 5 C 1.54324 * 110.71987 * 263.52092 * 3 2 1 6 6 N 1.47022 * 107.27600 * 219.44432 * 5 3 2 7 7 C 1.36937 * 125.65212 * 178.90504 * 6 5 3 8 8 H 1.08001 * 119.99585 * 180.02562 * 7 6 5 9 9 C 1.38811 * 119.99659 * 0.02562 * 7 6 5 10 10 N 1.31612 * 120.00325 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 119.99598 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.47236 * 359.97438 * 11 9 7 13 13 H 1.48497 * 109.47316 * 120.00047 * 11 9 7 14 14 H 1.48507 * 109.46919 * 240.00022 * 11 9 7 15 15 C 1.47470 * 108.71804 * 358.97387 * 6 5 3 16 16 C 1.54913 * 104.80994 * 24.07346 * 15 6 5 17 17 H 1.08996 * 111.00725 * 81.13531 * 16 15 6 18 18 N 1.46499 * 111.00061 * 204.94431 * 16 15 6 19 19 C 1.34771 * 120.00560 * 270.41451 * 18 16 15 20 20 O 1.21663 * 119.99633 * 0.02562 * 19 18 16 21 21 C 1.46977 * 120.00360 * 180.27697 * 19 18 16 22 22 O 1.34940 * 125.13485 * 359.75165 * 21 19 18 23 23 C 1.34714 * 110.86722 * 179.97438 * 22 21 19 24 24 C 1.39029 * 133.24478 * 179.97438 * 23 22 21 25 25 C 1.37793 * 119.85519 * 180.02562 * 24 23 22 26 26 C 1.38837 * 120.74601 * 0.02562 * 25 24 23 27 27 C 1.36623 * 120.44149 * 0.02562 * 26 25 24 28 28 C 1.39711 * 119.71033 * 359.95380 * 27 26 25 29 29 C 1.35810 * 125.13061 * 179.44799 * 21 19 18 30 30 C 1.50696 * 126.96231 * 0.02562 * 29 21 19 31 31 H 1.09007 * 109.47074 * 300.00417 * 1 2 3 32 32 H 1.09006 * 109.47265 * 59.99640 * 1 2 3 33 33 H 1.08998 * 109.47351 * 180.02562 * 1 2 3 34 34 H 1.09001 * 109.88373 * 338.86419 * 5 3 2 35 35 H 1.09008 * 109.88114 * 100.02246 * 5 3 2 36 36 H 0.97000 * 120.00105 * 179.97438 * 10 9 7 37 37 H 1.08997 * 110.35272 * 265.25532 * 15 6 5 38 38 H 1.09006 * 110.40321 * 142.91406 * 15 6 5 39 39 H 0.97000 * 120.00069 * 90.42181 * 18 16 15 40 40 H 1.08000 * 120.07235 * 0.02562 * 24 23 22 41 41 H 1.08002 * 119.62948 * 179.97438 * 25 24 23 42 42 H 1.07996 * 119.78347 * 179.97438 * 26 25 24 43 43 H 1.07997 * 120.14931 * 179.97438 * 27 26 25 44 44 H 1.09000 * 109.47608 * 90.02344 * 30 29 21 45 45 H 1.09008 * 109.47475 * 210.02803 * 30 29 21 46 46 H 1.09006 * 109.47338 * 330.02295 * 30 29 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3363 2.0289 0.4588 5 6 2.3811 1.7380 -1.4342 6 7 3.6686 2.4438 -1.3582 7 6 4.3548 2.9690 -2.4205 8 1 5.2974 3.4711 -2.2594 9 6 3.8388 2.8561 -3.7042 10 7 2.6900 2.2448 -3.9003 11 14 4.7753 3.5720 -5.1534 12 1 6.0292 4.2034 -4.6693 13 1 5.1049 2.4884 -6.1137 14 1 3.9359 4.5939 -5.8291 15 6 4.0998 2.4913 0.0512 16 6 3.3817 1.2957 0.7255 17 1 3.9155 0.3638 0.5395 18 7 3.2169 1.5251 2.1630 19 6 4.1768 1.1307 3.0228 20 8 5.1805 0.5845 2.6051 21 6 4.0087 1.3554 4.4656 22 8 2.9415 1.9487 5.0400 23 6 3.0863 2.0050 6.3781 24 6 2.2903 2.5057 7.4021 25 6 2.7176 2.4170 8.7091 26 6 3.9383 1.8322 9.0186 27 6 4.7380 1.3343 8.0291 28 6 4.3228 1.4139 6.6974 29 6 4.9014 0.9919 5.4223 30 6 6.2226 0.2981 5.2123 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 -0.3634 -1.0276 0.0005 34 1 2.4768 0.8601 -2.0731 35 1 1.6153 2.4052 -1.8299 36 1 2.3293 2.1662 -4.7973 37 1 3.7888 3.4291 0.5114 38 1 5.1811 2.3732 0.1220 39 1 2.4168 1.9608 2.4961 40 1 1.3389 2.9631 7.1737 41 1 2.0965 2.8074 9.5016 42 1 4.2582 1.7713 10.0483 43 1 5.6867 0.8808 8.2751 44 1 7.0064 1.0429 5.0746 45 1 6.4534 -0.3155 6.0833 46 1 6.1637 -0.3353 4.3271 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001082357003.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:16:38 Heat of formation + Delta-G solvation = -16.582012 kcal Electronic energy + Delta-G solvation = -29808.419879 eV Core-core repulsion = 25665.758344 eV Total energy + Delta-G solvation = -4142.661535 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.73916 -39.72553 -38.29008 -37.99135 -35.95878 -34.45608 -33.83372 -31.85995 -30.86085 -30.22329 -28.90018 -27.93681 -26.95454 -26.12482 -24.70674 -23.72745 -22.96446 -21.24477 -20.62044 -20.24681 -20.05890 -18.45279 -17.32118 -17.07489 -16.63951 -16.50812 -16.33127 -15.53362 -15.25713 -14.81187 -14.58217 -14.48916 -14.31087 -14.19107 -13.95552 -13.69520 -13.28623 -13.21049 -12.98322 -12.76221 -12.57133 -12.50601 -12.28535 -12.04385 -11.90979 -11.62096 -11.25491 -11.25170 -11.02611 -10.83335 -10.77693 -10.22124 -10.15446 -10.04980 -9.99719 -9.80990 -9.20923 -8.97369 -8.84953 -8.63089 -8.38490 -6.90623 -5.74502 -3.09650 0.33766 1.02344 1.62857 2.28313 3.12140 3.12747 3.36824 3.40021 3.45749 3.48228 4.10671 4.19288 4.27691 4.50148 4.55710 4.66462 4.80623 4.92815 5.04861 5.09356 5.16864 5.36146 5.36876 5.47196 5.56450 5.58237 5.61495 5.67505 5.71177 5.76312 5.80910 5.87676 5.90774 5.99414 6.00811 6.08506 6.10476 6.22330 6.25215 6.43336 6.58191 6.72322 6.83265 7.23357 7.45584 7.53286 7.70087 7.84497 8.11252 8.19650 9.16218 9.76150 10.38901 11.37036 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.017377 B = 0.002472 C = 0.002324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1610.921246 B =11325.565995 C =12043.085606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.377 6.377 3 C 0.056 3.944 4 H 0.064 0.936 5 C 0.166 3.834 6 N -0.600 5.600 7 C -0.228 4.228 8 H 0.082 0.918 9 C -0.008 4.008 10 N -0.922 5.922 11 Si 0.915 3.085 12 H -0.279 1.279 13 H -0.290 1.290 14 H -0.291 1.291 15 C 0.130 3.870 16 C 0.130 3.870 17 H 0.110 0.890 18 N -0.701 5.701 19 C 0.599 3.401 20 O -0.508 6.508 21 C -0.027 4.027 22 O -0.183 6.183 23 C 0.071 3.929 24 C -0.111 4.111 25 C -0.086 4.086 26 C -0.142 4.142 27 C -0.059 4.059 28 C -0.140 4.140 29 C -0.084 4.084 30 C -0.093 4.093 31 H 0.033 0.967 32 H 0.046 0.954 33 H 0.080 0.920 34 H 0.064 0.936 35 H 0.050 0.950 36 H 0.253 0.747 37 H 0.024 0.976 38 H 0.053 0.947 39 H 0.402 0.598 40 H 0.135 0.865 41 H 0.136 0.864 42 H 0.130 0.870 43 H 0.129 0.871 44 H 0.078 0.922 45 H 0.067 0.933 46 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.505 -1.813 25.490 25.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.296 6.296 3 C -0.003 4.003 4 H 0.082 0.918 5 C 0.040 3.960 6 N -0.328 5.328 7 C -0.356 4.356 8 H 0.100 0.900 9 C -0.204 4.204 10 N -0.570 5.570 11 Si 0.745 3.255 12 H -0.204 1.204 13 H -0.217 1.217 14 H -0.218 1.218 15 C 0.003 3.997 16 C 0.026 3.974 17 H 0.128 0.872 18 N -0.350 5.350 19 C 0.384 3.616 20 O -0.386 6.386 21 C -0.077 4.077 22 O -0.085 6.085 23 C 0.022 3.978 24 C -0.129 4.129 25 C -0.104 4.104 26 C -0.160 4.160 27 C -0.077 4.077 28 C -0.141 4.141 29 C -0.087 4.087 30 C -0.150 4.150 31 H 0.052 0.948 32 H 0.064 0.936 33 H 0.098 0.902 34 H 0.082 0.918 35 H 0.068 0.932 36 H 0.063 0.937 37 H 0.042 0.958 38 H 0.071 0.929 39 H 0.237 0.763 40 H 0.153 0.847 41 H 0.154 0.846 42 H 0.148 0.852 43 H 0.147 0.853 44 H 0.096 0.904 45 H 0.086 0.914 46 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -1.936 -2.264 24.752 24.931 hybrid contribution -0.321 0.859 -0.523 1.055 sum -2.257 -1.405 24.230 24.375 Atomic orbital electron populations 1.22719 0.81649 1.02115 0.99787 1.87907 1.19166 1.27444 1.95040 1.23848 0.92770 0.84209 0.99507 0.91773 1.21570 0.88259 0.97320 0.88847 1.44277 1.21358 1.66531 1.00624 1.19124 1.02330 1.29490 0.84622 0.90040 1.24824 0.97430 1.00695 0.97425 1.69941 1.19173 1.47284 1.20566 0.85999 0.78813 0.78192 0.82486 1.20413 1.21653 1.21754 1.21842 0.97870 0.93707 0.86281 1.22533 0.96924 1.01376 0.76596 0.87221 1.45877 1.21562 1.60081 1.07494 1.16597 0.83875 0.79281 0.81896 1.90870 1.28605 1.42869 1.76213 1.21903 0.88223 1.03778 0.93810 1.84020 1.40150 1.66072 1.18262 1.19735 0.95912 1.00129 0.81981 1.20006 1.00163 1.03147 0.89621 1.20996 0.96347 0.98068 0.94990 1.20788 0.95015 1.00675 0.99483 1.20361 0.99659 0.97789 0.89885 1.19835 0.95758 1.04317 0.94194 1.21397 0.97772 0.99963 0.89557 1.20453 0.90947 1.00043 1.03530 0.94817 0.93575 0.90186 0.91825 0.93231 0.93680 0.95791 0.92908 0.76329 0.84727 0.84616 0.85169 0.85270 0.90379 0.91435 0.88784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 10.85 101.05 1.10 1.58 16 2 O -0.38 -6.98 10.43 -35.23 -0.37 -7.35 16 3 C 0.06 1.06 3.08 -24.90 -0.08 0.98 16 4 H 0.06 1.08 7.69 -51.93 -0.40 0.68 16 5 C 0.17 4.01 5.15 -3.06 -0.02 3.99 16 6 N -0.60 -15.43 3.40 -170.03 -0.58 -16.00 16 7 C -0.23 -6.37 10.28 -15.06 -0.15 -6.52 16 8 H 0.08 2.21 7.83 -52.49 -0.41 1.80 16 9 C -0.01 -0.21 5.49 -17.43 -0.10 -0.31 16 10 N -0.92 -26.95 10.31 55.49 0.57 -26.38 16 11 Si 0.91 22.17 29.55 -169.99 -5.02 17.15 16 12 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 13 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 14 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 15 C 0.13 2.79 6.93 -2.50 -0.02 2.77 16 16 C 0.13 2.46 3.09 -65.78 -0.20 2.26 16 17 H 0.11 2.30 7.63 -51.93 -0.40 1.91 16 18 N -0.70 -10.98 5.21 -52.94 -0.28 -11.26 16 19 C 0.60 9.69 7.79 -12.72 -0.10 9.59 16 20 O -0.51 -9.45 14.31 5.22 0.07 -9.37 16 21 C -0.03 -0.39 7.07 -36.91 -0.26 -0.65 16 22 O -0.18 -2.44 10.28 2.80 0.03 -2.41 16 23 C 0.07 0.84 7.41 -38.35 -0.28 0.56 16 24 C -0.11 -0.99 10.07 -39.45 -0.40 -1.39 16 25 C -0.09 -0.60 10.01 -39.52 -0.40 -1.00 16 26 C -0.14 -1.00 9.98 -39.94 -0.40 -1.40 16 27 C -0.06 -0.52 10.06 -39.61 -0.40 -0.92 16 28 C -0.14 -1.63 6.37 -105.19 -0.67 -2.30 16 29 C -0.08 -1.09 6.39 -102.28 -0.65 -1.74 16 30 C -0.09 -1.05 9.81 36.00 0.35 -0.70 16 31 H 0.03 0.41 8.12 -51.93 -0.42 -0.01 16 32 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 34 H 0.06 1.75 7.30 -51.93 -0.38 1.37 16 35 H 0.05 1.30 7.51 -51.92 -0.39 0.91 16 36 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 37 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 39 H 0.40 5.39 8.25 -40.82 -0.34 5.05 16 40 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 41 H 0.14 0.55 8.06 -52.49 -0.42 0.13 16 42 H 0.13 0.57 8.06 -52.49 -0.42 0.15 16 43 H 0.13 0.87 8.06 -52.49 -0.42 0.44 16 44 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 45 H 0.07 0.59 8.14 -51.92 -0.42 0.17 16 46 H 0.09 1.22 6.38 -51.93 -0.33 0.89 16 LS Contribution 384.71 15.07 5.80 5.80 Total: -1.00 -32.81 384.71 -8.87 -41.68 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: -6.43 Total: 3.33 kcal Atomic # 6 Polarization: 7.49 SS G_CDS: -2.67 Total: 4.81 kcal Atomic # 7 Polarization: -53.36 SS G_CDS: -0.28 Total: -53.64 kcal Atomic # 8 Polarization: -18.86 SS G_CDS: -0.26 Total: -19.13 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -32.81 -8.87 -41.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082357003.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.094 kcal (2) G-P(sol) polarization free energy of solvation -32.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds