Wall clock time and date at job start Wed Apr 1 2020 02:35:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42898 * 114.00286 * 2 1 4 4 H 1.09003 * 110.63640 * 26.86462 * 3 2 1 5 5 C 1.54332 * 111.00436 * 263.78494 * 3 2 1 6 6 N 1.47021 * 107.26555 * 219.59720 * 5 3 2 7 7 C 1.36933 * 125.65083 * 178.84852 * 6 5 3 8 8 H 1.07992 * 120.00550 * 189.39056 * 7 6 5 9 9 C 1.38817 * 119.99719 * 9.38726 * 7 6 5 10 10 N 1.31620 * 120.00119 * 209.16582 * 9 7 6 11 11 Si 1.86802 * 119.99832 * 29.16967 * 9 7 6 12 12 H 1.48503 * 109.46877 * 275.35104 * 11 9 7 13 13 H 1.48501 * 109.47185 * 155.35304 * 11 9 7 14 14 H 1.48496 * 109.47348 * 35.35086 * 11 9 7 15 15 C 1.47429 * 108.70372 * 358.58677 * 6 5 3 16 16 C 1.54911 * 104.83029 * 24.35416 * 15 6 5 17 17 H 1.09001 * 111.00755 * 81.06846 * 16 15 6 18 18 N 1.46504 * 111.00185 * 204.87822 * 16 15 6 19 19 C 1.34777 * 119.99842 * 273.54633 * 18 16 15 20 20 O 1.21650 * 120.00362 * 359.97438 * 19 18 16 21 21 C 1.46974 * 119.99667 * 180.02562 * 19 18 16 22 22 C 1.35809 * 125.12976 * 179.97438 * 21 19 18 23 23 C 1.46243 * 106.08379 * 179.97438 * 22 21 19 24 24 C 1.40761 * 105.71864 * 0.02562 * 23 22 21 25 25 C 1.38989 * 119.16227 * 179.97438 * 24 23 22 26 26 C 1.37835 * 119.85482 * 0.06819 * 25 24 23 27 27 C 1.38790 * 120.74244 * 359.95650 * 26 25 24 28 28 C 1.36656 * 120.44618 * 359.97438 * 27 26 25 29 29 C 1.50704 * 120.14634 * 179.97438 * 28 27 26 30 30 O 1.34712 * 107.59249 * 359.77321 * 24 23 22 31 31 H 1.08995 * 109.47027 * 59.99671 * 1 2 3 32 32 H 1.08995 * 109.46821 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.46623 * 299.99535 * 1 2 3 34 34 H 1.09004 * 109.98826 * 100.12472 * 5 3 2 35 35 H 1.08999 * 109.77703 * 338.95421 * 5 3 2 36 36 H 0.96999 * 119.99811 * 4.90321 * 10 9 7 37 37 H 1.08996 * 110.36839 * 143.19487 * 15 6 5 38 38 H 1.09000 * 110.36348 * 265.51636 * 15 6 5 39 39 H 0.97001 * 119.99899 * 93.55322 * 18 16 15 40 40 H 1.07999 * 126.95503 * 359.93170 * 22 21 19 41 41 H 1.08000 * 120.07506 * 180.02562 * 25 24 23 42 42 H 1.08006 * 119.62730 * 179.97438 * 26 25 24 43 43 H 1.08003 * 119.77842 * 180.02562 * 27 26 25 44 44 H 1.08996 * 109.47382 * 270.02710 * 29 28 27 45 45 H 1.08997 * 109.46578 * 30.03087 * 29 28 27 46 46 H 1.09003 * 109.47005 * 150.02404 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3353 2.0265 0.4610 5 6 2.3778 1.7473 -1.4323 6 7 3.6669 2.4500 -1.3549 7 6 4.3516 2.9805 -2.4155 8 1 5.3597 3.3436 -2.2803 9 6 3.7501 3.0514 -3.6645 10 7 4.4868 2.9970 -4.7539 11 14 1.8949 3.2242 -3.7992 12 1 1.2658 1.8812 -3.7218 13 1 1.5497 3.8584 -5.0968 14 1 1.3944 4.0701 -2.6861 15 6 4.0971 2.4946 0.0545 16 6 3.3817 1.2957 0.7256 17 1 3.9172 0.3653 0.5364 18 7 3.2173 1.5205 2.1639 19 6 4.2055 1.1828 3.0160 20 8 5.2337 0.6909 2.5908 21 6 4.0404 1.4077 4.4590 22 6 4.9647 1.1074 5.4076 23 6 4.3748 1.5000 6.6868 24 6 3.1033 2.0186 6.3772 25 6 2.2912 2.4802 7.4064 26 6 2.7377 2.4267 8.7093 27 6 3.9925 1.9149 9.0089 28 6 4.8079 1.4539 8.0138 29 6 6.1694 0.9001 8.3467 30 8 2.9492 1.9482 5.0408 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3633 0.5138 0.8901 34 1 1.6127 2.4182 -1.8231 35 1 2.4706 0.8725 -2.0758 36 1 5.4409 2.8361 -4.6865 37 1 5.1787 2.3788 0.1248 38 1 3.7841 3.4306 0.5172 39 1 2.3973 1.9122 2.5030 40 1 5.9381 0.6671 5.2492 41 1 1.3128 2.8807 7.1857 42 1 2.1037 2.7869 9.5062 43 1 4.3265 1.8800 10.0354 44 1 6.9041 1.7049 8.3258 45 1 6.1470 0.4542 9.3410 46 1 6.4417 0.1404 7.6139 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001082388197.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:35:56 Heat of formation + Delta-G solvation = -12.559834 kcal Electronic energy + Delta-G solvation = -29627.521609 eV Core-core repulsion = 25485.034488 eV Total energy + Delta-G solvation = -4142.487120 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.80275 -39.93131 -38.64035 -38.29670 -36.25139 -34.39960 -33.70277 -32.15128 -31.90695 -30.33103 -29.07450 -27.98883 -27.17039 -26.35198 -24.67834 -23.29257 -23.02039 -21.19854 -21.08999 -20.78776 -20.25412 -18.64746 -17.53812 -17.45847 -16.84772 -16.64595 -16.47959 -16.04799 -15.44616 -15.01567 -14.84247 -14.71486 -14.29906 -14.17266 -14.05879 -13.92952 -13.70304 -13.43785 -13.39355 -13.19593 -12.71622 -12.64757 -12.21387 -12.12014 -12.04344 -11.94971 -11.80967 -11.35595 -11.29183 -11.15953 -10.63695 -10.47914 -10.43666 -10.35334 -9.88556 -9.45172 -9.27701 -9.06625 -8.97112 -8.49701 -8.43582 -7.15025 -6.38993 -3.21134 0.25773 0.96796 1.56869 2.17533 2.95280 3.02283 3.27971 3.39992 3.48332 3.66190 3.79561 4.09713 4.23262 4.43761 4.60241 4.68229 4.70990 4.73360 4.83810 4.94166 5.01290 5.10011 5.13243 5.23580 5.25081 5.27850 5.34923 5.36665 5.41301 5.49006 5.60992 5.64677 5.73168 5.77464 5.80484 5.88120 5.98519 6.11507 6.16133 6.19083 6.25322 6.47901 6.50500 6.62207 6.73130 7.31826 7.36328 7.62449 7.97057 8.31234 8.98707 9.53065 10.17674 11.10200 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.018842 B = 0.002448 C = 0.002322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.702632 B =11434.662470 C =12057.158004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.374 6.374 3 C 0.072 3.928 4 H 0.074 0.926 5 C 0.105 3.895 6 N -0.601 5.601 7 C -0.333 4.333 8 H 0.082 0.918 9 C -0.011 4.011 10 N -0.909 5.909 11 Si 1.049 2.951 12 H -0.292 1.292 13 H -0.296 1.296 14 H -0.294 1.294 15 C 0.129 3.871 16 C 0.133 3.867 17 H 0.113 0.887 18 N -0.702 5.702 19 C 0.599 3.401 20 O -0.507 6.507 21 C -0.019 4.019 22 C -0.113 4.113 23 C -0.143 4.143 24 C 0.073 3.927 25 C -0.117 4.117 26 C -0.080 4.080 27 C -0.144 4.144 28 C -0.025 4.025 29 C -0.119 4.119 30 O -0.184 6.184 31 H 0.044 0.956 32 H 0.085 0.915 33 H 0.039 0.961 34 H 0.032 0.968 35 H 0.058 0.942 36 H 0.266 0.734 37 H 0.060 0.940 38 H 0.028 0.972 39 H 0.404 0.596 40 H 0.170 0.830 41 H 0.135 0.865 42 H 0.137 0.863 43 H 0.131 0.869 44 H 0.076 0.924 45 H 0.071 0.929 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.233 -3.505 29.140 30.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.292 6.292 3 C 0.013 3.987 4 H 0.092 0.908 5 C -0.021 4.021 6 N -0.330 5.330 7 C -0.459 4.459 8 H 0.099 0.901 9 C -0.213 4.213 10 N -0.548 5.548 11 Si 0.882 3.118 12 H -0.220 1.220 13 H -0.224 1.224 14 H -0.222 1.222 15 C 0.001 3.999 16 C 0.029 3.971 17 H 0.131 0.869 18 N -0.352 5.352 19 C 0.384 3.616 20 O -0.384 6.384 21 C -0.069 4.069 22 C -0.134 4.134 23 C -0.144 4.144 24 C 0.025 3.975 25 C -0.136 4.136 26 C -0.098 4.098 27 C -0.162 4.162 28 C -0.025 4.025 29 C -0.176 4.176 30 O -0.086 6.086 31 H 0.063 0.937 32 H 0.104 0.896 33 H 0.058 0.942 34 H 0.050 0.950 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.078 0.922 38 H 0.046 0.954 39 H 0.239 0.761 40 H 0.188 0.812 41 H 0.152 0.848 42 H 0.155 0.845 43 H 0.148 0.852 44 H 0.095 0.905 45 H 0.090 0.910 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -6.784 -3.709 27.472 28.539 hybrid contribution 0.492 0.332 1.328 1.455 sum -6.293 -3.377 28.800 29.672 Atomic orbital electron populations 1.22809 0.81247 1.02671 1.00003 1.87947 1.19515 1.26867 1.94908 1.23396 0.93645 0.84758 0.96919 0.90801 1.22029 0.89472 0.96635 0.93962 1.44616 1.20962 1.65419 1.02032 1.20035 0.97689 1.41241 0.86981 0.90051 1.25734 1.06141 0.98889 0.90518 1.70878 1.08057 1.47588 1.28269 0.84042 0.77184 0.76369 0.74204 1.21989 1.22406 1.22165 1.21874 0.98562 0.93643 0.85774 1.22467 0.96048 1.01646 0.76985 0.86916 1.45803 1.18977 1.63030 1.07348 1.16612 0.84105 0.78884 0.82008 1.90923 1.27568 1.43919 1.75944 1.22066 0.87163 1.03818 0.93830 1.22697 1.00348 1.01308 0.89032 1.19760 0.95143 1.05556 0.93936 1.19737 0.95632 1.00291 0.81841 1.19976 1.00039 1.04009 0.89560 1.20973 0.96014 0.97747 0.95071 1.20687 0.94555 1.01787 0.99193 1.19184 0.96595 0.96456 0.90305 1.20846 0.92953 1.01262 1.02502 1.84021 1.38604 1.67623 1.18354 0.93720 0.89631 0.94240 0.95035 0.92428 0.92403 0.92190 0.95425 0.76144 0.81222 0.84757 0.84545 0.85155 0.90500 0.91018 0.91032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.85 101.05 1.10 1.46 16 2 O -0.37 -6.17 10.45 -35.23 -0.37 -6.54 16 3 C 0.07 1.24 3.06 -24.89 -0.08 1.17 16 4 H 0.07 1.09 7.68 -51.93 -0.40 0.69 16 5 C 0.10 2.32 4.73 -3.06 -0.01 2.31 16 6 N -0.60 -14.99 3.29 -170.07 -0.56 -15.55 16 7 C -0.33 -9.62 10.41 -15.06 -0.16 -9.78 16 8 H 0.08 2.47 8.06 -52.49 -0.42 2.05 16 9 C -0.01 -0.33 5.41 -17.43 -0.09 -0.43 16 10 N -0.91 -28.45 13.70 55.49 0.76 -27.69 16 11 Si 1.05 26.45 24.71 -169.99 -4.20 22.25 16 12 H -0.29 -6.94 6.70 56.52 0.38 -6.56 16 13 H -0.30 -7.55 7.11 56.52 0.40 -7.15 16 14 H -0.29 -7.03 6.84 56.52 0.39 -6.64 16 15 C 0.13 2.69 6.93 -2.53 -0.02 2.67 16 16 C 0.13 2.37 3.04 -65.78 -0.20 2.17 16 17 H 0.11 2.21 7.73 -51.93 -0.40 1.81 16 18 N -0.70 -10.24 5.23 -52.94 -0.28 -10.52 16 19 C 0.60 9.23 7.79 -12.72 -0.10 9.13 16 20 O -0.51 -9.37 16.57 5.23 0.09 -9.28 16 21 C -0.02 -0.25 7.07 -36.91 -0.26 -0.51 16 22 C -0.11 -1.36 10.52 -37.24 -0.39 -1.75 16 23 C -0.14 -1.58 6.15 -105.20 -0.65 -2.22 16 24 C 0.07 0.82 7.41 -38.35 -0.28 0.54 16 25 C -0.12 -1.00 10.07 -39.45 -0.40 -1.39 16 26 C -0.08 -0.54 10.01 -39.52 -0.40 -0.93 16 27 C -0.14 -1.02 9.63 -39.95 -0.38 -1.40 16 28 C -0.03 -0.22 5.88 -104.66 -0.62 -0.83 16 29 C -0.12 -0.76 9.96 36.01 0.36 -0.40 16 30 O -0.18 -2.28 10.28 2.76 0.03 -2.25 16 31 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.04 0.40 8.11 -51.93 -0.42 -0.02 16 34 H 0.03 0.72 3.91 -51.93 -0.20 0.52 16 35 H 0.06 1.38 7.78 -51.93 -0.40 0.97 16 36 H 0.27 8.24 8.73 -40.82 -0.36 7.89 16 37 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 38 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.40 4.87 8.23 -40.82 -0.34 4.53 16 40 H 0.17 1.81 8.06 -52.49 -0.42 1.39 16 41 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 42 H 0.14 0.52 8.06 -52.48 -0.42 0.10 16 43 H 0.13 0.59 8.06 -52.48 -0.42 0.17 16 44 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.07 0.34 8.08 -51.93 -0.42 -0.08 16 46 H 0.07 0.47 7.91 -51.93 -0.41 0.06 16 LS Contribution 382.92 15.07 5.77 5.77 Total: -1.00 -34.47 382.92 -7.75 -42.22 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: -6.41 Total: 1.80 kcal Atomic # 6 Polarization: 2.37 SS G_CDS: -2.58 Total: -0.21 kcal Atomic # 7 Polarization: -53.69 SS G_CDS: -0.08 Total: -53.76 kcal Atomic # 8 Polarization: -17.82 SS G_CDS: -0.25 Total: -18.07 kcal Atomic # 14 Polarization: 26.45 SS G_CDS: -4.20 Total: 22.25 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -34.47 -7.75 -42.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082388197.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.660 kcal (2) G-P(sol) polarization free energy of solvation -34.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds