Wall clock time and date at job start Wed Apr 1 2020 03:11:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30447 * 125.98867 * 2 1 4 4 N 1.39928 * 108.89741 * 180.02562 * 3 2 1 5 5 C 1.46497 * 125.75610 * 180.02562 * 4 3 2 6 6 C 1.53008 * 109.46801 * 304.96939 * 5 4 3 7 7 F 1.39894 * 109.46925 * 65.00165 * 6 5 4 8 8 F 1.39900 * 109.46942 * 185.00215 * 6 5 4 9 9 C 1.34262 * 108.49489 * 359.74443 * 4 3 2 10 10 C 1.38044 * 107.41190 * 0.39980 * 9 4 3 11 11 C 1.47436 * 126.41379 * 179.86837 * 10 9 4 12 12 O 1.21605 * 119.99737 * 179.41374 * 11 10 9 13 13 N 1.34777 * 119.99981 * 359.68400 * 11 10 9 14 14 C 1.46496 * 119.99875 * 179.97438 * 13 11 10 15 15 H 1.09000 * 110.64132 * 36.69647 * 14 13 11 16 16 C 1.54323 * 110.72392 * 273.54855 * 14 13 11 17 17 N 1.47024 * 107.27311 * 219.44599 * 16 14 13 18 18 C 1.36938 * 125.64629 * 178.97808 * 17 16 14 19 19 H 1.07991 * 120.00095 * 359.97438 * 18 17 16 20 20 C 1.38810 * 119.99517 * 180.02562 * 18 17 16 21 21 N 1.31619 * 120.00340 * 359.97438 * 20 18 17 22 22 Si 1.86808 * 119.99684 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47082 * 89.99554 * 22 20 18 24 24 H 1.48497 * 109.46692 * 209.99834 * 22 20 18 25 25 H 1.48498 * 109.46731 * 329.99190 * 22 20 18 26 26 C 1.47420 * 108.70204 * 358.93769 * 17 16 14 27 27 C 1.54916 * 104.83354 * 24.13100 * 26 17 16 28 28 H 1.08995 * 111.00423 * 204.91266 * 27 26 17 29 29 O 1.42906 * 111.00203 * 81.06077 * 27 26 17 30 30 H 1.08999 * 109.47322 * 269.95778 * 1 2 3 31 31 H 1.08997 * 109.46634 * 29.95870 * 1 2 3 32 32 H 1.08995 * 109.46903 * 149.95950 * 1 2 3 33 33 H 1.08999 * 109.47620 * 64.96581 * 5 4 3 34 34 H 1.08997 * 109.47640 * 184.97336 * 5 4 3 35 35 H 1.09000 * 109.47242 * 305.00038 * 6 5 4 36 36 H 1.07999 * 126.29636 * 180.23903 * 9 4 3 37 37 H 0.96999 * 120.00043 * 0.02562 * 13 11 10 38 38 H 1.09005 * 109.88058 * 338.86645 * 16 14 13 39 39 H 1.09001 * 109.87988 * 100.02961 * 16 14 13 40 40 H 0.96996 * 120.00248 * 179.97438 * 21 20 18 41 41 H 1.09004 * 110.36565 * 142.96480 * 26 17 16 42 42 H 1.08997 * 110.37337 * 265.18359 * 26 17 16 43 43 H 0.96701 * 113.99974 * 67.81188 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2736 1.0555 0.0000 4 7 3.6111 0.6442 -0.0006 5 6 4.7787 1.5290 -0.0003 6 6 4.6855 2.4968 -1.1817 7 9 3.5825 3.3396 -1.0082 8 9 5.8531 3.2645 -1.2488 9 6 3.6440 -0.6980 0.0047 10 6 2.3373 -1.1432 -0.0005 11 6 1.8916 -2.5486 -0.0002 12 8 0.7039 -2.8097 0.0056 13 7 2.8004 -3.5438 -0.0009 14 6 2.3575 -4.9402 0.0000 15 1 1.4611 -5.0594 -0.6086 16 6 2.1087 -5.4333 1.4410 17 7 2.6027 -6.8158 1.5207 18 6 2.5846 -7.6065 2.6386 19 1 2.1824 -7.2232 3.5646 20 6 3.0844 -8.9003 2.5817 21 7 3.5751 -9.3672 1.4531 22 14 3.0591 -9.9792 4.1064 23 1 1.7842 -10.7391 4.1540 24 1 4.2000 -10.9286 4.0599 25 1 3.1732 -9.1273 5.3174 26 6 3.1197 -7.2100 0.1977 27 6 3.4912 -5.8759 -0.4966 28 1 3.4652 -5.9796 -1.5813 29 8 4.7691 -5.4093 -0.0591 30 1 -0.3634 -0.0008 1.0276 31 1 -0.3632 0.8904 -0.5132 32 1 -0.3633 -0.8896 -0.5144 33 1 4.8059 2.0944 0.9312 34 1 5.6866 0.9326 -0.0900 35 1 4.5689 1.9313 -2.1063 36 1 4.5298 -1.3157 0.0093 37 1 3.7478 -3.3355 -0.0011 38 1 2.6514 -4.8044 2.1469 39 1 1.0418 -5.4075 1.6626 40 1 3.9246 -10.2711 1.4134 41 1 4.0031 -7.8392 0.3077 42 1 2.3503 -7.7335 -0.3698 43 1 5.5089 -5.9623 -0.3455 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083549690.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:11:15 Heat of formation + Delta-G solvation = -74.719789 kcal Electronic energy + Delta-G solvation = -30139.739970 eV Core-core repulsion = 25472.620613 eV Total energy + Delta-G solvation = -4667.119357 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.145 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.47387 -47.45771 -41.68977 -39.34324 -37.71047 -34.87671 -34.73065 -33.96235 -31.91701 -31.12059 -30.18362 -28.49839 -27.61917 -26.81086 -24.63115 -23.91556 -22.60697 -20.85067 -20.61348 -19.81793 -19.64374 -18.45957 -17.97109 -17.68801 -17.22400 -16.73813 -16.62776 -15.93126 -15.48223 -15.27505 -14.81135 -14.63855 -14.39525 -14.22013 -14.06926 -13.92834 -13.79427 -13.66719 -13.13281 -13.07367 -12.90588 -12.83355 -12.67874 -12.52540 -12.13485 -11.77356 -11.67719 -11.34478 -11.08166 -11.02241 -10.86268 -10.61790 -10.36286 -10.05544 -9.84710 -9.68735 -9.61728 -9.25681 -8.99363 -8.70102 -8.60365 -6.85298 -5.70306 -3.09777 1.19796 1.75378 2.02899 3.04417 3.38493 3.40616 3.44437 3.46743 3.56018 3.59605 3.66927 4.04455 4.30316 4.41704 4.48114 4.59429 4.60609 4.70235 4.95530 5.22344 5.26422 5.35972 5.38480 5.49195 5.65269 5.72594 5.78517 5.87777 5.93578 6.05374 6.27265 6.35494 6.38870 6.58095 6.73231 6.96987 7.25172 7.30638 7.55891 7.71030 7.86797 8.08540 8.30142 8.52490 9.17735 9.78761 10.42030 11.34921 Molecular weight = 344.14amu Principal moments of inertia in cm(-1) A = 0.019287 B = 0.002285 C = 0.002180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.370873 B =12248.218512 C =12843.470122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.137 3.863 3 N -0.291 5.291 4 N -0.372 5.372 5 C 0.086 3.914 6 C 0.258 3.742 7 F -0.185 7.185 8 F -0.197 7.197 9 C 0.102 3.898 10 C -0.273 4.273 11 C 0.588 3.412 12 O -0.542 6.542 13 N -0.706 5.706 14 C 0.146 3.854 15 H 0.101 0.899 16 C 0.131 3.869 17 N -0.597 5.597 18 C -0.215 4.215 19 H 0.078 0.922 20 C -0.013 4.013 21 N -0.928 5.928 22 Si 0.916 3.084 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.282 1.282 26 C 0.127 3.873 27 C 0.068 3.932 28 H 0.059 0.941 29 O -0.562 6.562 30 H 0.081 0.919 31 H 0.070 0.930 32 H 0.098 0.902 33 H 0.112 0.888 34 H 0.131 0.869 35 H 0.115 0.885 36 H 0.187 0.813 37 H 0.403 0.597 38 H 0.029 0.971 39 H 0.029 0.971 40 H 0.252 0.748 41 H 0.115 0.885 42 H 0.023 0.977 43 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.297 20.837 -8.323 23.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.032 4.032 3 N -0.112 5.112 4 N -0.151 5.151 5 C -0.037 4.037 6 C 0.203 3.797 7 F -0.167 7.167 8 F -0.178 7.178 9 C -0.047 4.047 10 C -0.287 4.287 11 C 0.375 3.625 12 O -0.420 6.420 13 N -0.357 5.357 14 C 0.040 3.960 15 H 0.119 0.881 16 C 0.005 3.995 17 N -0.323 5.323 18 C -0.343 4.343 19 H 0.096 0.904 20 C -0.208 4.208 21 N -0.577 5.577 22 Si 0.747 3.253 23 H -0.216 1.216 24 H -0.217 1.217 25 H -0.207 1.207 26 C 0.001 3.999 27 C 0.007 3.993 28 H 0.077 0.923 29 O -0.368 6.368 30 H 0.100 0.900 31 H 0.089 0.911 32 H 0.117 0.883 33 H 0.131 0.869 34 H 0.149 0.851 35 H 0.132 0.868 36 H 0.204 0.796 37 H 0.238 0.762 38 H 0.047 0.953 39 H 0.047 0.953 40 H 0.062 0.938 41 H 0.132 0.868 42 H 0.040 0.960 43 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 4.303 22.303 -7.967 24.071 hybrid contribution 1.002 -1.715 0.617 2.080 sum 5.305 20.588 -7.350 22.495 Atomic orbital electron populations 1.20374 0.85358 1.04115 1.03802 1.22598 0.97461 0.88616 0.94500 1.77370 0.85197 1.22170 1.26423 1.47985 1.05620 1.04365 1.57137 1.22745 0.86731 0.93606 1.00648 1.21959 0.72107 0.84961 1.00631 1.93083 1.53384 1.73455 1.96743 1.93029 1.49295 1.78018 1.97504 1.23191 0.99430 0.84490 0.97548 1.20401 0.91904 0.94895 1.21542 1.17237 0.85830 0.83341 0.76093 1.90748 1.16244 1.84096 1.50922 1.45666 1.09721 1.05610 1.74691 1.22123 0.96601 0.78683 0.98552 0.88145 1.21603 0.97071 0.87612 0.93261 1.44294 1.71140 1.09146 1.07750 1.19102 1.33408 0.93421 0.88358 0.90421 1.24751 1.01415 0.97143 0.97492 1.69714 1.47320 1.16576 1.24128 0.86038 0.77186 0.80212 0.81893 1.21615 1.21688 1.20718 1.22596 1.01127 0.91275 0.84901 1.23578 0.82972 0.96558 0.96173 0.92350 1.86220 1.15730 1.54671 1.80207 0.90022 0.91073 0.88337 0.86945 0.85055 0.86811 0.79581 0.76198 0.95322 0.95305 0.93752 0.86761 0.95956 0.77355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.89 9.92 36.01 0.36 -0.54 16 2 C 0.14 1.76 7.26 -82.02 -0.60 1.16 16 3 N -0.29 -3.55 11.63 33.90 0.39 -3.16 16 4 N -0.37 -3.36 3.65 -60.81 -0.22 -3.58 16 5 C 0.09 0.45 6.71 -4.04 -0.03 0.42 16 6 C 0.26 1.61 5.51 37.16 0.20 1.81 16 7 F -0.19 -1.83 16.55 2.25 0.04 -1.80 16 8 F -0.20 -1.36 17.34 2.25 0.04 -1.32 16 9 C 0.10 0.93 10.95 -16.56 -0.18 0.75 16 10 C -0.27 -3.46 6.13 -105.06 -0.64 -4.11 16 11 C 0.59 9.08 7.81 -12.51 -0.10 8.98 16 12 O -0.54 -10.02 14.65 5.27 0.08 -9.95 16 13 N -0.71 -10.48 5.07 -53.10 -0.27 -10.75 16 14 C 0.15 2.60 3.12 -66.10 -0.21 2.40 16 15 H 0.10 1.84 7.70 -51.93 -0.40 1.44 16 16 C 0.13 2.88 6.99 -3.06 -0.02 2.86 16 17 N -0.60 -15.15 3.39 -170.07 -0.58 -15.73 16 18 C -0.21 -5.97 10.27 -15.06 -0.15 -6.13 16 19 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 20 C -0.01 -0.37 5.49 -17.43 -0.10 -0.46 16 21 N -0.93 -26.19 10.09 55.49 0.56 -25.63 16 22 Si 0.92 21.94 29.55 -169.99 -5.02 16.92 16 23 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 24 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 25 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 26 C 0.13 2.89 5.62 -2.53 -0.01 2.87 16 27 C 0.07 1.17 4.28 -24.58 -0.11 1.06 16 28 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 29 O -0.56 -8.82 12.23 -35.23 -0.43 -9.25 16 30 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 31 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.10 1.25 6.56 -51.93 -0.34 0.90 16 33 H 0.11 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.13 0.21 8.06 -51.93 -0.42 -0.21 16 35 H 0.11 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.19 1.02 7.46 -52.49 -0.39 0.63 16 37 H 0.40 5.11 6.49 -40.82 -0.26 4.85 16 38 H 0.03 0.65 8.03 -51.93 -0.42 0.23 16 39 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 41 H 0.11 2.88 5.87 -51.93 -0.30 2.58 16 42 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 43 H 0.38 4.72 9.12 45.56 0.42 5.13 16 LS Contribution 367.95 15.07 5.54 5.54 Total: -1.00 -35.24 367.95 -6.08 -41.31 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -4.63 Total: 6.30 kcal Atomic # 6 Polarization: 12.66 SS G_CDS: -1.58 Total: 11.08 kcal Atomic # 7 Polarization: -58.74 SS G_CDS: -0.11 Total: -58.85 kcal Atomic # 8 Polarization: -18.84 SS G_CDS: -0.35 Total: -19.20 kcal Atomic # 9 Polarization: -3.19 SS G_CDS: 0.08 Total: -3.11 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -35.24 -6.08 -41.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083549690.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.405 kcal (2) G-P(sol) polarization free energy of solvation -35.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds