Wall clock time and date at job start Wed Apr 1 2020 03:11:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30447 * 125.98867 * 2 1 4 4 N 1.39928 * 108.89741 * 180.02562 * 3 2 1 5 5 C 1.46497 * 125.75610 * 180.02562 * 4 3 2 6 6 C 1.53008 * 109.46801 * 304.96939 * 5 4 3 7 7 F 1.39894 * 109.46925 * 65.00165 * 6 5 4 8 8 F 1.39900 * 109.46942 * 185.00215 * 6 5 4 9 9 C 1.34262 * 108.49489 * 359.74443 * 4 3 2 10 10 C 1.38044 * 107.41190 * 0.39980 * 9 4 3 11 11 C 1.47436 * 126.41379 * 179.86837 * 10 9 4 12 12 O 1.21605 * 119.99737 * 179.41374 * 11 10 9 13 13 N 1.34777 * 119.99981 * 359.68400 * 11 10 9 14 14 C 1.46496 * 119.99875 * 179.97438 * 13 11 10 15 15 H 1.09000 * 110.64132 * 36.69647 * 14 13 11 16 16 C 1.54323 * 110.72392 * 273.54855 * 14 13 11 17 17 N 1.47024 * 107.27311 * 219.44599 * 16 14 13 18 18 C 1.36938 * 125.64629 * 178.97808 * 17 16 14 19 19 H 1.07991 * 120.00095 * 359.97438 * 18 17 16 20 20 C 1.38810 * 119.99517 * 180.02562 * 18 17 16 21 21 N 1.31619 * 120.00340 * 359.97438 * 20 18 17 22 22 Si 1.86808 * 119.99684 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47082 * 89.99554 * 22 20 18 24 24 H 1.48497 * 109.46692 * 209.99834 * 22 20 18 25 25 H 1.48498 * 109.46731 * 329.99190 * 22 20 18 26 26 C 1.47420 * 108.70204 * 358.93769 * 17 16 14 27 27 C 1.54916 * 104.83354 * 24.13100 * 26 17 16 28 28 H 1.08995 * 111.00423 * 204.91266 * 27 26 17 29 29 O 1.42906 * 111.00203 * 81.06077 * 27 26 17 30 30 H 1.08999 * 109.47322 * 269.95778 * 1 2 3 31 31 H 1.08997 * 109.46634 * 29.95870 * 1 2 3 32 32 H 1.08995 * 109.46903 * 149.95950 * 1 2 3 33 33 H 1.08999 * 109.47620 * 64.96581 * 5 4 3 34 34 H 1.08997 * 109.47640 * 184.97336 * 5 4 3 35 35 H 1.09000 * 109.47242 * 305.00038 * 6 5 4 36 36 H 1.07999 * 126.29636 * 180.23903 * 9 4 3 37 37 H 0.96999 * 120.00043 * 0.02562 * 13 11 10 38 38 H 1.09005 * 109.88058 * 338.86645 * 16 14 13 39 39 H 1.09001 * 109.87988 * 100.02961 * 16 14 13 40 40 H 0.96996 * 120.00248 * 179.97438 * 21 20 18 41 41 H 1.09004 * 110.36565 * 142.96480 * 26 17 16 42 42 H 1.08997 * 110.37337 * 265.18359 * 26 17 16 43 43 H 0.96701 * 113.99974 * 67.81188 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2736 1.0555 0.0000 4 7 3.6111 0.6442 -0.0006 5 6 4.7787 1.5290 -0.0003 6 6 4.6855 2.4968 -1.1817 7 9 3.5825 3.3396 -1.0082 8 9 5.8531 3.2645 -1.2488 9 6 3.6440 -0.6980 0.0047 10 6 2.3373 -1.1432 -0.0005 11 6 1.8916 -2.5486 -0.0002 12 8 0.7039 -2.8097 0.0056 13 7 2.8004 -3.5438 -0.0009 14 6 2.3575 -4.9402 0.0000 15 1 1.4611 -5.0594 -0.6086 16 6 2.1087 -5.4333 1.4410 17 7 2.6027 -6.8158 1.5207 18 6 2.5846 -7.6065 2.6386 19 1 2.1824 -7.2232 3.5646 20 6 3.0844 -8.9003 2.5817 21 7 3.5751 -9.3672 1.4531 22 14 3.0591 -9.9792 4.1064 23 1 1.7842 -10.7391 4.1540 24 1 4.2000 -10.9286 4.0599 25 1 3.1732 -9.1273 5.3174 26 6 3.1197 -7.2100 0.1977 27 6 3.4912 -5.8759 -0.4966 28 1 3.4652 -5.9796 -1.5813 29 8 4.7691 -5.4093 -0.0591 30 1 -0.3634 -0.0008 1.0276 31 1 -0.3632 0.8904 -0.5132 32 1 -0.3633 -0.8896 -0.5144 33 1 4.8059 2.0944 0.9312 34 1 5.6866 0.9326 -0.0900 35 1 4.5689 1.9313 -2.1063 36 1 4.5298 -1.3157 0.0093 37 1 3.7478 -3.3355 -0.0011 38 1 2.6514 -4.8044 2.1469 39 1 1.0418 -5.4075 1.6626 40 1 3.9246 -10.2711 1.4134 41 1 4.0031 -7.8392 0.3077 42 1 2.3503 -7.7335 -0.3698 43 1 5.5089 -5.9623 -0.3455 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083549690.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:11:14 Heat of formation + Delta-G solvation = -102.102782 kcal Electronic energy + Delta-G solvation = -30140.927386 eV Core-core repulsion = 25472.620613 eV Total energy + Delta-G solvation = -4668.306773 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.145 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -50.00978 -48.02560 -42.51962 -40.66856 -39.14213 -36.32108 -35.62859 -35.28971 -33.65231 -32.03634 -31.13121 -30.10932 -28.77855 -28.12110 -26.39142 -24.70144 -23.46340 -22.33880 -21.92036 -21.03999 -20.74765 -19.35872 -18.94060 -18.52244 -18.25433 -18.14611 -17.47857 -16.86211 -16.79383 -16.46137 -16.27275 -15.94065 -15.57498 -15.22768 -15.09986 -14.90049 -14.66284 -14.51110 -14.42950 -14.36831 -14.21496 -13.87125 -13.54022 -13.48647 -13.30711 -13.18342 -12.98299 -12.87282 -12.72769 -12.22209 -12.19837 -12.09128 -11.88045 -11.85400 -11.79606 -10.93478 -10.79701 -10.67919 -10.43976 -10.11439 -9.69158 -8.87227 -7.78889 -5.21631 0.42248 1.06113 1.12700 1.47454 1.48912 1.57403 2.19807 2.44239 2.51231 2.58815 3.15054 3.24276 3.27370 3.32187 3.53898 3.64956 3.71631 3.81362 3.91138 4.00256 4.01758 4.24497 4.32847 4.34633 4.38630 4.45024 4.56232 4.76349 4.78928 4.92010 4.92696 4.96556 5.07758 5.38317 5.47254 5.49300 5.56845 5.72504 5.75243 6.28755 6.45388 6.74080 6.96695 7.11502 7.37495 7.76095 8.38523 9.22949 Molecular weight = 344.14amu Principal moments of inertia in cm(-1) A = 0.019287 B = 0.002285 C = 0.002180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.370873 B =12248.218512 C =12843.470122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.121 3.879 3 N -0.314 5.314 4 N -0.363 5.363 5 C 0.081 3.919 6 C 0.254 3.746 7 F -0.211 7.211 8 F -0.200 7.200 9 C 0.136 3.864 10 C -0.308 4.308 11 C 0.589 3.411 12 O -0.582 6.582 13 N -0.694 5.694 14 C 0.158 3.842 15 H 0.095 0.905 16 C 0.132 3.868 17 N -0.616 5.616 18 C -0.239 4.239 19 H 0.071 0.929 20 C -0.060 4.060 21 N -0.945 5.945 22 Si 0.978 3.022 23 H -0.289 1.289 24 H -0.288 1.288 25 H -0.274 1.274 26 C 0.125 3.875 27 C 0.094 3.906 28 H 0.096 0.904 29 O -0.561 6.561 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.117 0.883 34 H 0.179 0.821 35 H 0.134 0.866 36 H 0.231 0.769 37 H 0.416 0.584 38 H 0.022 0.978 39 H 0.008 0.992 40 H 0.249 0.751 41 H 0.091 0.909 42 H -0.001 1.001 43 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.783 21.866 -8.750 24.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.046 4.046 3 N -0.135 5.135 4 N -0.141 5.141 5 C -0.040 4.040 6 C 0.200 3.800 7 F -0.192 7.192 8 F -0.182 7.182 9 C -0.015 4.015 10 C -0.323 4.323 11 C 0.378 3.622 12 O -0.462 6.462 13 N -0.345 5.345 14 C 0.052 3.948 15 H 0.113 0.887 16 C 0.005 3.995 17 N -0.343 5.343 18 C -0.368 4.368 19 H 0.089 0.911 20 C -0.253 4.253 21 N -0.594 5.594 22 Si 0.807 3.193 23 H -0.216 1.216 24 H -0.214 1.214 25 H -0.199 1.199 26 C -0.001 4.001 27 C 0.033 3.967 28 H 0.114 0.886 29 O -0.369 6.369 30 H 0.098 0.902 31 H 0.102 0.898 32 H 0.100 0.900 33 H 0.135 0.865 34 H 0.196 0.804 35 H 0.151 0.849 36 H 0.248 0.752 37 H 0.254 0.746 38 H 0.040 0.960 39 H 0.026 0.974 40 H 0.059 0.941 41 H 0.109 0.891 42 H 0.017 0.983 43 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 6.833 23.387 -8.409 25.775 hybrid contribution 0.292 -1.963 0.766 2.127 sum 7.125 21.424 -7.643 23.836 Atomic orbital electron populations 1.20310 0.85543 1.03900 1.03653 1.22738 0.97918 0.89081 0.94905 1.77332 0.86805 1.22271 1.27109 1.48251 1.05502 1.04998 1.55365 1.23157 0.86694 0.93758 1.00385 1.22242 0.71087 0.84606 1.02070 1.93036 1.54849 1.74414 1.96930 1.93022 1.49353 1.78216 1.97587 1.23711 0.99311 0.84626 0.93862 1.20201 0.93717 0.93116 1.25264 1.17611 0.85241 0.84400 0.74910 1.90730 1.17999 1.84819 1.52701 1.45431 1.10408 1.04063 1.74625 1.21762 0.96994 0.80573 0.95508 0.88673 1.21648 0.95455 0.86300 0.96072 1.44560 1.71473 1.10182 1.08042 1.19370 1.33814 0.94407 0.89239 0.91064 1.25514 1.01288 0.98175 1.00283 1.69935 1.47500 1.16526 1.25479 0.85083 0.76903 0.78386 0.78963 1.21614 1.21369 1.19932 1.22522 0.99205 0.94091 0.84246 1.23226 0.83429 0.92676 0.97338 0.88639 1.86181 1.15510 1.54708 1.80497 0.90157 0.89761 0.89975 0.86497 0.80372 0.84917 0.75242 0.74567 0.96016 0.97447 0.94080 0.89120 0.98316 0.75344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.78 9.92 71.24 0.71 -1.07 16 2 C 0.12 3.04 7.26 43.52 0.32 3.36 16 3 N -0.31 -7.19 11.63 -46.67 -0.54 -7.74 16 4 N -0.36 -5.36 3.65 -346.30 -1.26 -6.62 16 5 C 0.08 0.52 6.71 86.38 0.58 1.10 16 6 C 0.25 2.45 5.51 71.98 0.40 2.85 16 7 F -0.21 -3.89 16.55 44.97 0.74 -3.15 16 8 F -0.20 -2.24 17.34 44.97 0.78 -1.46 16 9 C 0.14 1.95 10.95 84.28 0.92 2.87 16 10 C -0.31 -7.32 6.13 -20.15 -0.12 -7.44 16 11 C 0.59 17.71 7.81 86.67 0.68 18.38 16 12 O -0.58 -21.96 14.65 -4.05 -0.06 -22.02 16 13 N -0.69 -19.24 5.07 -440.17 -2.23 -21.47 16 14 C 0.16 5.52 3.12 46.18 0.14 5.66 16 15 H 0.10 3.47 7.70 -2.39 -0.02 3.45 16 16 C 0.13 5.88 6.99 86.73 0.61 6.49 16 17 N -0.62 -31.83 3.39 -691.98 -2.35 -34.18 16 18 C -0.24 -13.58 10.27 84.03 0.86 -12.72 16 19 H 0.07 4.00 7.83 -2.92 -0.02 3.97 16 20 C -0.06 -3.34 5.49 84.86 0.47 -2.88 16 21 N -0.94 -53.89 10.09 21.65 0.22 -53.68 16 22 Si 0.98 45.30 29.55 68.60 2.03 47.33 16 23 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 24 H -0.29 -13.09 7.11 99.48 0.71 -12.39 16 25 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 26 C 0.12 5.72 5.62 86.86 0.49 6.21 16 27 C 0.09 3.06 4.28 31.99 0.14 3.19 16 28 H 0.10 2.51 8.14 -2.39 -0.02 2.49 16 29 O -0.56 -15.81 12.23 -148.98 -1.82 -17.63 16 30 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.08 2.19 6.56 -2.39 -0.02 2.18 16 33 H 0.12 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.18 -0.50 8.06 -2.39 -0.02 -0.52 16 35 H 0.13 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.23 1.11 7.46 -2.91 -0.02 1.08 16 37 H 0.42 9.08 6.49 -92.71 -0.60 8.48 16 38 H 0.02 0.99 8.03 -2.38 -0.02 0.97 16 39 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 40 H 0.25 13.77 8.31 -92.71 -0.77 13.00 16 41 H 0.09 4.61 5.87 -2.39 -0.01 4.59 16 42 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 43 H 0.40 8.52 9.12 -74.06 -0.68 7.84 16 Total: -1.00 -79.87 367.95 1.48 -78.39 By element: Atomic # 1 Polarization: 16.43 SS G_CDS: -0.19 Total: 16.23 kcal Atomic # 6 Polarization: 19.82 SS G_CDS: 6.18 Total: 26.00 kcal Atomic # 7 Polarization: -117.52 SS G_CDS: -6.17 Total: -123.69 kcal Atomic # 8 Polarization: -37.77 SS G_CDS: -1.88 Total: -39.65 kcal Atomic # 9 Polarization: -6.13 SS G_CDS: 1.52 Total: -4.60 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.33 kcal Total: -79.87 1.48 -78.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083549690.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.718 kcal (2) G-P(sol) polarization free energy of solvation -79.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds