Wall clock time and date at job start Wed Apr 1 2020 02:22:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.36663 * 119.77555 * 2 1 4 4 C 1.39664 * 119.70622 * 180.02562 * 3 2 1 5 5 C 1.46252 * 134.19354 * 179.97438 * 4 3 2 6 6 C 1.35804 * 106.08180 * 179.97438 * 5 4 3 7 7 C 1.46982 * 125.12803 * 180.02562 * 6 5 4 8 8 O 1.21659 * 119.99602 * 359.97438 * 7 6 5 9 9 N 1.34767 * 120.00117 * 180.02562 * 7 6 5 10 10 C 1.46494 * 120.00421 * 179.97438 * 9 7 6 11 11 H 1.09001 * 110.64258 * 34.30000 * 10 9 7 12 12 C 1.54328 * 110.72184 * 271.15893 * 10 9 7 13 13 N 1.47023 * 107.27194 * 219.44060 * 12 10 9 14 14 C 1.36932 * 125.64600 * 178.98081 * 13 12 10 15 15 H 1.07997 * 120.00483 * 359.97438 * 14 13 12 16 16 C 1.38817 * 119.99694 * 180.02562 * 14 13 12 17 17 N 1.31610 * 120.00175 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 119.99771 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.47495 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.47576 * 119.99503 * 18 16 14 21 21 H 1.48508 * 109.46990 * 239.99500 * 18 16 14 22 22 C 1.47421 * 108.70249 * 358.94175 * 13 12 10 23 23 C 1.55122 * 104.94471 * 24.00029 * 22 13 12 24 24 H 1.08998 * 111.16480 * 205.12971 * 23 22 13 25 25 O 1.42905 * 110.93147 * 81.21625 * 23 22 13 26 26 O 1.34942 * 109.74245 * 0.02562 * 6 5 4 27 27 C 1.34714 * 110.86826 * 359.97438 * 26 6 5 28 28 C 1.38983 * 133.25103 * 180.02562 * 27 26 6 29 29 C 1.37836 * 119.85661 * 180.02562 * 28 27 26 30 30 C 1.50700 * 119.62865 * 179.97438 * 29 28 27 31 31 H 1.09004 * 109.47347 * 270.02820 * 1 2 3 32 32 H 1.09000 * 109.46884 * 30.02239 * 1 2 3 33 33 H 1.09000 * 109.46914 * 150.02621 * 1 2 3 34 34 H 1.07995 * 120.14630 * 359.96739 * 3 2 1 35 35 H 1.08003 * 126.95682 * 0.23214 * 5 4 3 36 36 H 0.97007 * 119.99941 * 0.02562 * 9 7 6 37 37 H 1.08997 * 109.88069 * 338.86151 * 12 10 9 38 38 H 1.09002 * 109.87981 * 99.86971 * 12 10 9 39 39 H 0.97003 * 120.00480 * 180.02562 * 17 16 14 40 40 H 1.08997 * 110.36584 * 142.96695 * 22 13 12 41 41 H 1.09006 * 110.36631 * 265.29010 * 22 13 12 42 42 H 0.96694 * 114.00398 * 67.96085 * 25 23 22 43 43 H 1.08003 * 120.07179 * 0.02562 * 28 27 26 44 44 H 1.09006 * 109.46965 * 89.99478 * 30 29 28 45 45 H 1.08995 * 109.47344 * 209.99780 * 30 29 28 46 46 H 1.09006 * 109.47070 * 330.00043 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1857 1.1862 0.0000 4 6 3.5823 1.1845 -0.0005 5 6 4.6031 2.2319 -0.0012 6 6 5.8001 1.5905 -0.0009 7 6 7.1133 2.2507 -0.0008 8 8 7.1835 3.4653 -0.0015 9 7 8.2396 1.5107 -0.0011 10 6 9.5485 2.1686 -0.0015 11 1 9.5136 3.0942 0.5732 12 6 10.0228 2.4398 -1.4449 13 7 11.4672 2.1684 -1.4880 14 6 12.2657 2.2708 -2.5956 15 1 11.8411 2.5734 -3.5414 16 6 13.6209 1.9845 -2.5031 17 7 14.1383 1.6153 -1.3507 18 14 14.7101 2.1235 -4.0143 19 1 13.8917 2.5533 -5.1766 20 1 15.7787 3.1238 -3.7640 21 1 15.3257 0.8034 -4.3038 22 6 11.9134 1.7686 -0.1410 23 6 10.6411 1.2179 0.5549 24 1 10.7175 1.3027 1.6389 25 8 10.3906 -0.1339 0.1653 26 8 5.6021 0.2557 -0.0007 27 6 4.2865 -0.0342 -0.0003 28 6 3.5744 -1.2278 0.0004 29 6 2.1963 -1.2046 0.0002 30 6 1.4293 -2.5018 0.0004 31 1 -0.3634 0.0005 1.0277 32 1 -0.3633 0.8898 -0.5142 33 1 -0.3633 -0.8902 -0.5134 34 1 1.6444 2.1207 -0.0005 35 1 4.4382 3.2992 0.0021 36 1 8.1836 0.5422 -0.0017 37 1 9.5006 1.7792 -2.1369 38 1 9.8307 3.4797 -1.7090 39 1 15.0853 1.4156 -1.2859 40 1 12.6759 0.9927 -0.2087 41 1 12.2966 2.6318 0.4034 42 1 11.0474 -0.7650 0.4899 43 1 4.0998 -2.1714 0.0012 44 1 1.2443 -2.8143 1.0282 45 1 0.4784 -2.3618 -0.5136 46 1 2.0106 -3.2677 -0.5131 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083960670.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:22:57 Heat of formation + Delta-G solvation = -25.656659 kcal Electronic energy + Delta-G solvation = -29293.728044 eV Core-core repulsion = 25150.673003 eV Total energy + Delta-G solvation = -4143.055041 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.66839 -39.72753 -38.88770 -37.83324 -34.75916 -34.19648 -33.55290 -32.58314 -31.75362 -31.22216 -28.73070 -27.56231 -27.40039 -26.53661 -24.59433 -23.22474 -22.15930 -21.60013 -20.69287 -20.28841 -19.82301 -18.31984 -17.41783 -17.12618 -16.78324 -16.49077 -15.63970 -15.51156 -15.37317 -14.85524 -14.72068 -14.41597 -14.36559 -14.23762 -14.02257 -13.31616 -13.26073 -13.18433 -13.07599 -12.90789 -12.73559 -12.56070 -12.42784 -11.83939 -11.75567 -11.73938 -11.37348 -11.22176 -11.11359 -10.89752 -10.68836 -10.38332 -10.30210 -10.24865 -9.98434 -9.85984 -9.26268 -8.88848 -8.70316 -8.68587 -8.36180 -6.86611 -5.70703 -3.10538 0.36876 1.04095 1.67220 2.31528 3.13155 3.19884 3.34050 3.38899 3.44805 3.47288 4.20326 4.35164 4.42161 4.48040 4.60562 4.64721 4.72744 4.82341 5.00910 5.11233 5.16276 5.21652 5.29552 5.29964 5.33893 5.37176 5.45430 5.47508 5.58735 5.67542 5.70068 5.85401 5.88243 5.94424 6.00092 6.10446 6.21622 6.23388 6.33306 6.40914 6.66317 6.79454 6.90846 7.23493 7.54544 7.63687 7.72579 8.06378 8.22289 8.29955 9.16934 9.77685 10.40665 11.34618 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.022268 B = 0.002085 C = 0.002051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.080715 B =13424.330701 C =13647.710880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.107 4.107 3 C -0.059 4.059 4 C -0.143 4.143 5 C -0.120 4.120 6 C -0.015 4.015 7 C 0.593 3.407 8 O -0.519 6.519 9 N -0.691 5.691 10 C 0.140 3.860 11 H 0.105 0.895 12 C 0.131 3.869 13 N -0.596 5.596 14 C -0.215 4.215 15 H 0.079 0.921 16 C -0.013 4.013 17 N -0.927 5.927 18 Si 0.917 3.083 19 H -0.280 1.280 20 H -0.290 1.290 21 H -0.290 1.290 22 C 0.127 3.873 23 C 0.067 3.933 24 H 0.061 0.939 25 O -0.561 6.561 26 O -0.182 6.182 27 C 0.070 3.930 28 C -0.109 4.109 29 C -0.053 4.053 30 C -0.117 4.117 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.071 0.929 34 H 0.130 0.870 35 H 0.170 0.830 36 H 0.415 0.585 37 H 0.031 0.969 38 H 0.031 0.969 39 H 0.252 0.748 40 H 0.117 0.883 41 H 0.023 0.977 42 H 0.380 0.620 43 H 0.135 0.865 44 H 0.075 0.925 45 H 0.075 0.925 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.676 -7.225 7.160 27.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.107 4.107 3 C -0.077 4.077 4 C -0.144 4.144 5 C -0.141 4.141 6 C -0.065 4.065 7 C 0.377 3.623 8 O -0.397 6.397 9 N -0.341 5.341 10 C 0.035 3.965 11 H 0.123 0.877 12 C 0.004 3.996 13 N -0.322 5.322 14 C -0.344 4.344 15 H 0.097 0.903 16 C -0.208 4.208 17 N -0.576 5.576 18 Si 0.748 3.252 19 H -0.205 1.205 20 H -0.217 1.217 21 H -0.217 1.217 22 C 0.002 3.998 23 C 0.006 3.994 24 H 0.079 0.921 25 O -0.367 6.367 26 O -0.083 6.083 27 C 0.021 3.979 28 C -0.127 4.127 29 C -0.053 4.053 30 C -0.174 4.174 31 H 0.089 0.911 32 H 0.085 0.915 33 H 0.090 0.910 34 H 0.148 0.852 35 H 0.187 0.813 36 H 0.251 0.749 37 H 0.049 0.951 38 H 0.049 0.951 39 H 0.062 0.938 40 H 0.134 0.866 41 H 0.041 0.959 42 H 0.228 0.772 43 H 0.153 0.847 44 H 0.094 0.906 45 H 0.094 0.906 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -25.663 -6.305 6.787 27.284 hybrid contribution 1.122 -0.395 -0.482 1.284 sum -24.541 -6.700 6.304 26.209 Atomic orbital electron populations 1.20833 0.90622 1.03040 1.02480 1.19355 0.96388 0.92074 1.02906 1.20180 0.91044 0.98226 0.98215 1.19885 0.94526 0.92468 1.07529 1.22700 0.89152 1.00088 1.02130 1.22126 0.96051 0.80351 1.07956 1.16731 0.81519 0.86330 0.77710 1.90888 1.85707 1.12053 1.51078 1.45796 1.04958 1.11249 1.72084 1.22292 0.79655 0.95690 0.98851 0.87710 1.21598 0.87007 0.98082 0.92952 1.44282 1.01876 1.79496 1.06587 1.19151 0.89288 1.38132 0.87784 0.90298 1.24767 0.96640 1.02016 0.97400 1.69718 1.11947 1.53256 1.22703 0.85949 0.80384 0.77233 0.81655 1.20502 1.21746 1.21748 1.22651 0.92870 0.99918 0.84390 1.23643 0.96902 0.82263 0.96543 0.92110 1.86245 1.53780 1.16899 1.79770 1.84052 1.24457 1.23743 1.76064 1.19684 0.81004 0.95610 1.01569 1.19791 0.92387 0.94885 1.05658 1.19532 0.91994 0.95457 0.98303 1.20898 1.00082 0.93551 1.02822 0.91098 0.91485 0.90986 0.85194 0.81251 0.74857 0.95146 0.95137 0.93752 0.86589 0.95869 0.77196 0.84686 0.90636 0.90636 0.91135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.60 9.58 36.01 0.34 -0.25 16 2 C -0.11 -0.89 5.85 -104.99 -0.61 -1.50 16 3 C -0.06 -0.56 9.68 -39.62 -0.38 -0.95 16 4 C -0.14 -1.74 6.38 -105.19 -0.67 -2.41 16 5 C -0.12 -1.57 10.80 -37.24 -0.40 -1.97 16 6 C -0.01 -0.22 7.07 -36.91 -0.26 -0.48 16 7 C 0.59 9.95 7.79 -12.72 -0.10 9.86 16 8 O -0.52 -9.95 16.51 5.23 0.09 -9.86 16 9 N -0.69 -11.55 5.08 -53.25 -0.27 -11.82 16 10 C 0.14 2.63 3.15 -66.10 -0.21 2.42 16 11 H 0.11 1.96 7.62 -51.93 -0.40 1.56 16 12 C 0.13 2.93 7.00 -3.06 -0.02 2.91 16 13 N -0.60 -15.42 3.40 -169.94 -0.58 -16.00 16 14 C -0.22 -6.07 10.27 -15.06 -0.15 -6.23 16 15 H 0.08 2.18 7.83 -52.49 -0.41 1.77 16 16 C -0.01 -0.38 5.49 -17.43 -0.10 -0.47 16 17 N -0.93 -26.48 10.09 55.49 0.56 -25.92 16 18 Si 0.92 22.19 29.55 -169.99 -5.02 17.17 16 19 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 20 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 21 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 22 C 0.13 2.97 5.62 -2.42 -0.01 2.96 16 23 C 0.07 1.22 4.31 -24.47 -0.11 1.12 16 24 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 25 O -0.56 -9.69 12.23 -35.23 -0.43 -10.12 16 26 O -0.18 -2.59 10.28 2.79 0.03 -2.56 16 27 C 0.07 0.89 7.41 -38.35 -0.28 0.60 16 28 C -0.11 -1.10 9.70 -39.45 -0.38 -1.48 16 29 C -0.05 -0.44 5.88 -104.57 -0.61 -1.06 16 30 C -0.12 -0.62 9.58 36.01 0.34 -0.27 16 31 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.07 0.31 8.08 -51.93 -0.42 -0.11 16 33 H 0.07 0.30 5.90 -51.93 -0.31 -0.01 16 34 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 35 H 0.17 1.94 8.06 -52.48 -0.42 1.52 16 36 H 0.41 6.59 7.29 -40.82 -0.30 6.29 16 37 H 0.03 0.71 8.03 -51.93 -0.42 0.29 16 38 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 40 H 0.12 2.99 5.87 -51.93 -0.30 2.68 16 41 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.38 5.25 9.12 45.56 0.42 5.66 16 43 H 0.14 1.13 8.06 -52.48 -0.42 0.70 16 44 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 45 H 0.07 0.31 5.90 -51.93 -0.31 0.00 16 46 H 0.07 0.33 8.08 -51.93 -0.42 -0.09 16 LS Contribution 380.92 15.07 5.74 5.74 Total: -1.00 -32.98 380.92 -8.89 -41.87 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: -5.38 Total: 8.71 kcal Atomic # 6 Polarization: 6.42 SS G_CDS: -3.62 Total: 2.79 kcal Atomic # 7 Polarization: -53.46 SS G_CDS: -0.29 Total: -53.75 kcal Atomic # 8 Polarization: -22.23 SS G_CDS: -0.32 Total: -22.54 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -32.98 -8.89 -41.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083960670.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.216 kcal (2) G-P(sol) polarization free energy of solvation -32.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds