Wall clock time and date at job start Wed Apr 1 2020 02:22:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.36663 * 119.77555 * 2 1 4 4 C 1.39664 * 119.70622 * 180.02562 * 3 2 1 5 5 C 1.46252 * 134.19354 * 179.97438 * 4 3 2 6 6 C 1.35804 * 106.08180 * 179.97438 * 5 4 3 7 7 C 1.46982 * 125.12803 * 180.02562 * 6 5 4 8 8 O 1.21659 * 119.99602 * 359.97438 * 7 6 5 9 9 N 1.34767 * 120.00117 * 180.02562 * 7 6 5 10 10 C 1.46494 * 120.00421 * 179.97438 * 9 7 6 11 11 H 1.09001 * 110.64258 * 34.30000 * 10 9 7 12 12 C 1.54328 * 110.72184 * 271.15893 * 10 9 7 13 13 N 1.47023 * 107.27194 * 219.44060 * 12 10 9 14 14 C 1.36932 * 125.64600 * 178.98081 * 13 12 10 15 15 H 1.07997 * 120.00483 * 359.97438 * 14 13 12 16 16 C 1.38817 * 119.99694 * 180.02562 * 14 13 12 17 17 N 1.31610 * 120.00175 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 119.99771 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.47495 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.47576 * 119.99503 * 18 16 14 21 21 H 1.48508 * 109.46990 * 239.99500 * 18 16 14 22 22 C 1.47421 * 108.70249 * 358.94175 * 13 12 10 23 23 C 1.55122 * 104.94471 * 24.00029 * 22 13 12 24 24 H 1.08998 * 111.16480 * 205.12971 * 23 22 13 25 25 O 1.42905 * 110.93147 * 81.21625 * 23 22 13 26 26 O 1.34942 * 109.74245 * 0.02562 * 6 5 4 27 27 C 1.34714 * 110.86826 * 359.97438 * 26 6 5 28 28 C 1.38983 * 133.25103 * 180.02562 * 27 26 6 29 29 C 1.37836 * 119.85661 * 180.02562 * 28 27 26 30 30 C 1.50700 * 119.62865 * 179.97438 * 29 28 27 31 31 H 1.09004 * 109.47347 * 270.02820 * 1 2 3 32 32 H 1.09000 * 109.46884 * 30.02239 * 1 2 3 33 33 H 1.09000 * 109.46914 * 150.02621 * 1 2 3 34 34 H 1.07995 * 120.14630 * 359.96739 * 3 2 1 35 35 H 1.08003 * 126.95682 * 0.23214 * 5 4 3 36 36 H 0.97007 * 119.99941 * 0.02562 * 9 7 6 37 37 H 1.08997 * 109.88069 * 338.86151 * 12 10 9 38 38 H 1.09002 * 109.87981 * 99.86971 * 12 10 9 39 39 H 0.97003 * 120.00480 * 180.02562 * 17 16 14 40 40 H 1.08997 * 110.36584 * 142.96695 * 22 13 12 41 41 H 1.09006 * 110.36631 * 265.29010 * 22 13 12 42 42 H 0.96694 * 114.00398 * 67.96085 * 25 23 22 43 43 H 1.08003 * 120.07179 * 0.02562 * 28 27 26 44 44 H 1.09006 * 109.46965 * 89.99478 * 30 29 28 45 45 H 1.08995 * 109.47344 * 209.99780 * 30 29 28 46 46 H 1.09006 * 109.47070 * 330.00043 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1857 1.1862 0.0000 4 6 3.5823 1.1845 -0.0005 5 6 4.6031 2.2319 -0.0012 6 6 5.8001 1.5905 -0.0009 7 6 7.1133 2.2507 -0.0008 8 8 7.1835 3.4653 -0.0015 9 7 8.2396 1.5107 -0.0011 10 6 9.5485 2.1686 -0.0015 11 1 9.5136 3.0942 0.5732 12 6 10.0228 2.4398 -1.4449 13 7 11.4672 2.1684 -1.4880 14 6 12.2657 2.2708 -2.5956 15 1 11.8411 2.5734 -3.5414 16 6 13.6209 1.9845 -2.5031 17 7 14.1383 1.6153 -1.3507 18 14 14.7101 2.1235 -4.0143 19 1 13.8917 2.5533 -5.1766 20 1 15.7787 3.1238 -3.7640 21 1 15.3257 0.8034 -4.3038 22 6 11.9134 1.7686 -0.1410 23 6 10.6411 1.2179 0.5549 24 1 10.7175 1.3027 1.6389 25 8 10.3906 -0.1339 0.1653 26 8 5.6021 0.2557 -0.0007 27 6 4.2865 -0.0342 -0.0003 28 6 3.5744 -1.2278 0.0004 29 6 2.1963 -1.2046 0.0002 30 6 1.4293 -2.5018 0.0004 31 1 -0.3634 0.0005 1.0277 32 1 -0.3633 0.8898 -0.5142 33 1 -0.3633 -0.8902 -0.5134 34 1 1.6444 2.1207 -0.0005 35 1 4.4382 3.2992 0.0021 36 1 8.1836 0.5422 -0.0017 37 1 9.5006 1.7792 -2.1369 38 1 9.8307 3.4797 -1.7090 39 1 15.0853 1.4156 -1.2859 40 1 12.6759 0.9927 -0.2087 41 1 12.2966 2.6318 0.4034 42 1 11.0474 -0.7650 0.4899 43 1 4.0998 -2.1714 0.0012 44 1 1.2443 -2.8143 1.0282 45 1 0.4784 -2.3618 -0.5136 46 1 2.0106 -3.2677 -0.5131 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083960670.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:22:56 Heat of formation + Delta-G solvation = -48.480479 kcal Electronic energy + Delta-G solvation = -29294.717759 eV Core-core repulsion = 25150.673003 eV Total energy + Delta-G solvation = -4144.044756 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.60927 -41.09948 -39.72248 -39.34451 -36.41736 -35.68503 -34.42596 -33.71808 -33.18489 -32.12229 -30.46035 -29.04195 -28.02881 -27.69496 -26.38745 -24.24188 -23.06757 -22.50163 -22.37834 -21.67433 -21.21827 -19.58357 -18.95962 -18.38873 -18.12597 -17.53154 -17.04113 -16.83084 -16.43937 -16.19088 -16.09221 -15.70786 -15.59138 -15.10568 -14.97858 -14.77120 -14.70299 -14.35757 -14.17878 -13.94196 -13.60350 -13.55578 -13.28808 -13.25566 -12.99483 -12.94480 -12.78692 -12.44957 -12.31188 -12.19581 -12.15411 -11.95291 -11.91587 -11.91064 -11.55975 -11.21263 -10.92621 -10.74997 -10.33235 -9.44339 -9.23871 -8.92991 -7.82871 -5.26302 -0.55847 0.26964 0.71032 1.30230 1.45604 1.46059 1.56656 1.88839 1.95835 2.46915 2.57812 3.10469 3.28095 3.30153 3.54915 3.63170 3.78672 3.80460 3.87179 3.89642 3.98186 4.09082 4.21682 4.24946 4.42283 4.42534 4.66516 4.67250 4.72736 4.77625 4.80664 4.80753 4.83196 4.96805 5.00670 5.15127 5.20570 5.25026 5.26587 5.31057 5.34922 5.44626 5.57615 5.63596 5.69398 5.98017 6.23313 6.33181 6.79173 6.93999 7.06537 7.70250 8.33016 9.19484 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.022268 B = 0.002085 C = 0.002051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.080715 B =13424.330701 C =13647.710880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.106 4.106 3 C -0.063 4.063 4 C -0.165 4.165 5 C -0.105 4.105 6 C -0.045 4.045 7 C 0.597 3.403 8 O -0.549 6.549 9 N -0.685 5.685 10 C 0.151 3.849 11 H 0.108 0.892 12 C 0.131 3.869 13 N -0.616 5.616 14 C -0.241 4.241 15 H 0.073 0.927 16 C -0.061 4.061 17 N -0.945 5.945 18 Si 0.982 3.018 19 H -0.273 1.273 20 H -0.289 1.289 21 H -0.287 1.287 22 C 0.127 3.873 23 C 0.089 3.911 24 H 0.099 0.901 25 O -0.566 6.566 26 O -0.194 6.194 27 C 0.048 3.952 28 C -0.126 4.126 29 C -0.043 4.043 30 C -0.118 4.118 31 H 0.083 0.917 32 H 0.075 0.925 33 H 0.087 0.913 34 H 0.151 0.849 35 H 0.181 0.819 36 H 0.420 0.580 37 H 0.020 0.980 38 H 0.018 0.982 39 H 0.250 0.750 40 H 0.093 0.907 41 H 0.005 0.995 42 H 0.397 0.603 43 H 0.148 0.852 44 H 0.089 0.911 45 H 0.093 0.907 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.523 -8.635 7.514 30.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.107 4.107 3 C -0.081 4.081 4 C -0.166 4.166 5 C -0.126 4.126 6 C -0.095 4.095 7 C 0.384 3.616 8 O -0.429 6.429 9 N -0.335 5.335 10 C 0.045 3.955 11 H 0.126 0.874 12 C 0.004 3.996 13 N -0.342 5.342 14 C -0.370 4.370 15 H 0.091 0.909 16 C -0.254 4.254 17 N -0.594 5.594 18 Si 0.810 3.190 19 H -0.197 1.197 20 H -0.216 1.216 21 H -0.214 1.214 22 C 0.002 3.998 23 C 0.028 3.972 24 H 0.116 0.884 25 O -0.374 6.374 26 O -0.097 6.097 27 C 0.000 4.000 28 C -0.144 4.144 29 C -0.044 4.044 30 C -0.174 4.174 31 H 0.101 0.899 32 H 0.094 0.906 33 H 0.106 0.894 34 H 0.169 0.831 35 H 0.198 0.802 36 H 0.257 0.743 37 H 0.038 0.962 38 H 0.036 0.964 39 H 0.060 0.940 40 H 0.110 0.890 41 H 0.023 0.977 42 H 0.247 0.753 43 H 0.165 0.835 44 H 0.108 0.892 45 H 0.111 0.889 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -28.534 -7.747 7.156 30.420 hybrid contribution 1.816 -0.034 -0.603 1.914 sum -26.718 -7.781 6.553 28.589 Atomic orbital electron populations 1.20925 0.88027 1.04310 1.03618 1.19812 0.98241 0.91480 1.01126 1.20522 0.90057 0.99900 0.97650 1.20071 0.95582 0.91785 1.09126 1.22977 0.89081 1.00865 0.99649 1.21677 0.95302 0.81062 1.11415 1.16908 0.82110 0.86003 0.76613 1.90858 1.86350 1.13254 1.52477 1.45638 1.04244 1.11366 1.72243 1.22019 0.80852 0.96312 0.96268 0.87396 1.21635 0.85589 0.96972 0.95420 1.44541 1.03031 1.79660 1.06966 1.19420 0.90220 1.38722 0.88596 0.90865 1.25570 0.97703 1.01855 1.00262 1.69936 1.11942 1.53405 1.24130 0.84964 0.78364 0.77041 0.78632 1.19743 1.21628 1.21377 1.22551 0.94888 0.98577 0.83789 1.23379 0.93576 0.82390 0.97814 0.88369 1.86219 1.54385 1.16596 1.80192 1.83986 1.25616 1.23260 1.76825 1.20175 0.80496 0.96918 1.02437 1.20136 0.93265 0.94627 1.06352 1.20019 0.91498 0.97126 0.95728 1.21017 1.00450 0.91868 1.04032 0.89864 0.90627 0.89419 0.83136 0.80184 0.74264 0.96235 0.96397 0.93998 0.88967 0.97692 0.75258 0.83451 0.89240 0.88872 0.90476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.75 9.58 71.24 0.68 -0.06 16 2 C -0.11 -1.46 5.85 -20.10 -0.12 -1.58 16 3 C -0.06 -1.09 9.68 22.25 0.22 -0.88 16 4 C -0.16 -3.90 6.38 -20.24 -0.13 -4.03 16 5 C -0.11 -2.76 10.80 23.79 0.26 -2.51 16 6 C -0.05 -1.36 7.07 24.00 0.17 -1.19 16 7 C 0.60 20.53 7.79 86.54 0.67 21.21 16 8 O -0.55 -21.59 16.51 -4.22 -0.07 -21.66 16 9 N -0.68 -23.14 5.08 -440.61 -2.24 -25.38 16 10 C 0.15 5.73 3.15 46.18 0.15 5.87 16 11 H 0.11 4.06 7.62 -2.39 -0.02 4.04 16 12 C 0.13 6.07 7.00 86.73 0.61 6.67 16 13 N -0.62 -32.82 3.40 -691.56 -2.35 -35.17 16 14 C -0.24 -13.95 10.27 84.04 0.86 -13.09 16 15 H 0.07 4.19 7.83 -2.91 -0.02 4.16 16 16 C -0.06 -3.48 5.49 84.86 0.47 -3.02 16 17 N -0.94 -54.95 10.09 21.65 0.22 -54.73 16 18 Si 0.98 46.16 29.55 68.60 2.03 48.19 16 19 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 20 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 21 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 22 C 0.13 6.08 5.62 86.93 0.49 6.57 16 23 C 0.09 3.20 4.31 32.06 0.14 3.34 16 24 H 0.10 2.89 8.14 -2.39 -0.02 2.87 16 25 O -0.57 -19.04 12.23 -148.98 -1.82 -20.86 16 26 O -0.19 -5.65 10.28 -12.93 -0.13 -5.79 16 27 C 0.05 1.20 7.41 23.06 0.17 1.37 16 28 C -0.13 -2.39 9.70 22.35 0.22 -2.17 16 29 C -0.04 -0.62 5.88 -19.83 -0.12 -0.73 16 30 C -0.12 -0.82 9.58 71.24 0.68 -0.14 16 31 H 0.08 0.41 8.14 -2.39 -0.02 0.39 16 32 H 0.07 0.41 8.08 -2.39 -0.02 0.39 16 33 H 0.09 0.33 5.90 -2.39 -0.01 0.32 16 34 H 0.15 1.86 8.06 -2.91 -0.02 1.84 16 35 H 0.18 4.12 8.06 -2.91 -0.02 4.10 16 36 H 0.42 13.37 7.29 -92.70 -0.68 12.69 16 37 H 0.02 0.94 8.03 -2.39 -0.02 0.92 16 38 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.25 14.03 8.31 -92.71 -0.77 13.26 16 40 H 0.09 4.87 5.87 -2.39 -0.01 4.85 16 41 H 0.01 0.26 8.14 -2.38 -0.02 0.24 16 42 H 0.40 10.46 9.12 -74.06 -0.68 9.79 16 43 H 0.15 2.29 8.06 -2.91 -0.02 2.27 16 44 H 0.09 0.45 8.14 -2.38 -0.02 0.43 16 45 H 0.09 0.35 5.90 -2.39 -0.01 0.34 16 46 H 0.08 0.48 8.08 -2.38 -0.02 0.46 16 Total: -1.00 -73.34 380.92 0.74 -72.60 By element: Atomic # 1 Polarization: 27.49 SS G_CDS: -0.31 Total: 27.18 kcal Atomic # 6 Polarization: 10.21 SS G_CDS: 5.41 Total: 15.62 kcal Atomic # 7 Polarization: -110.92 SS G_CDS: -4.37 Total: -115.28 kcal Atomic # 8 Polarization: -46.28 SS G_CDS: -2.02 Total: -48.31 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 2.03 Total: 48.19 kcal Total: -73.34 0.74 -72.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083960670.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.116 kcal (2) G-P(sol) polarization free energy of solvation -73.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds