Wall clock time and date at job start Wed Apr 1 2020 02:08:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86805 * 119.99890 * 2 1 4 4 H 1.48501 * 109.47027 * 275.14720 * 3 2 1 5 5 H 1.48502 * 109.47129 * 35.14712 * 3 2 1 6 6 H 1.48505 * 109.47058 * 155.14649 * 3 2 1 7 7 C 1.38810 * 120.00140 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99825 * 338.55182 * 7 2 1 9 9 N 1.36936 * 120.00434 * 158.55584 * 7 2 1 10 10 C 1.46615 * 119.88782 * 330.52614 * 9 7 2 11 11 C 1.53107 * 108.00711 * 237.32992 * 10 9 7 12 12 C 1.53012 * 109.44831 * 301.02180 * 11 10 9 13 13 H 1.09001 * 113.41862 * 274.23609 * 12 11 10 14 14 C 1.54645 * 110.84358 * 143.88882 * 12 11 10 15 15 N 1.47811 * 85.92479 * 269.58599 * 14 12 11 16 16 C 1.34781 * 135.00881 * 153.86954 * 15 14 12 17 17 O 1.21280 * 119.99804 * 179.97438 * 16 15 14 18 18 C 1.50703 * 119.99945 * 359.97438 * 16 15 14 19 19 C 1.54884 * 129.09122 * 299.94106 * 18 16 15 20 20 C 1.57170 * 77.91760 * 180.16418 * 19 18 16 21 21 C 1.52994 * 129.24956 * 179.19300 * 20 19 18 22 22 F 1.39900 * 109.47543 * 301.28534 * 21 20 19 23 23 F 1.39904 * 109.47224 * 61.28661 * 21 20 19 24 24 F 1.39905 * 109.47077 * 181.28551 * 21 20 19 25 25 C 1.54410 * 129.01250 * 180.02562 * 18 16 15 26 26 C 1.54892 * 83.77047 * 317.35414 * 20 19 18 27 27 C 1.47060 * 89.88399 * 333.91856 * 15 14 12 28 28 H 1.08995 * 110.79810 * 274.42420 * 27 15 14 29 29 C 1.45671 * 119.89508 * 150.49970 * 9 7 2 30 30 H 0.97007 * 119.99688 * 0.02562 * 1 2 3 31 31 H 1.09003 * 109.75849 * 117.70130 * 10 9 7 32 32 H 1.09004 * 109.80002 * 356.98349 * 10 9 7 33 33 H 1.09001 * 109.47662 * 181.02431 * 11 10 9 34 34 H 1.09000 * 109.47586 * 61.01687 * 11 10 9 35 35 H 1.09004 * 113.81766 * 23.86147 * 14 12 11 36 36 H 1.08996 * 113.82086 * 155.30395 * 14 12 11 37 37 H 1.09001 * 114.97882 * 291.95839 * 19 18 16 38 38 H 1.09002 * 114.98171 * 67.12856 * 19 18 16 39 39 H 1.09004 * 114.93206 * 293.13694 * 25 18 16 40 40 H 1.09002 * 114.93419 * 68.15810 * 25 18 16 41 41 H 1.08994 * 116.12165 * 290.12161 * 26 20 19 42 42 H 1.08997 * 113.82670 * 154.95735 * 26 20 19 43 43 H 1.08995 * 108.72081 * 261.74918 * 29 9 7 44 44 H 1.09007 * 108.71531 * 19.89822 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3889 2.1093 -1.3944 5 1 1.5062 2.6189 0.8060 6 1 3.5979 1.4113 0.5885 7 6 2.0103 -1.2021 -0.0005 8 1 1.5264 -2.1051 0.3411 9 7 3.3086 -1.2430 -0.4341 10 6 3.7701 -0.2914 -1.4494 11 6 4.3166 -1.0918 -2.6347 12 6 5.4626 -1.9874 -2.1596 13 1 6.4297 -1.4847 -2.1495 14 6 5.4519 -3.3394 -2.9104 15 7 4.5846 -3.8209 -1.8146 16 6 3.6445 -4.7791 -1.6940 17 8 3.0830 -4.9475 -0.6322 18 6 3.2909 -5.6411 -2.8785 19 6 2.7301 -5.2207 -4.2596 20 6 2.8326 -6.7820 -4.4077 21 6 2.4581 -7.6683 -5.5972 22 9 1.1044 -7.4913 -5.9027 23 9 3.2361 -7.3152 -6.7050 24 9 2.6913 -9.0088 -5.2717 25 6 2.2586 -6.7855 -2.9742 26 6 4.1975 -6.5902 -3.7010 27 6 5.1733 -2.8196 -0.9126 28 1 6.0901 -3.1976 -0.4603 29 6 4.2267 -2.2315 0.1154 30 1 -0.4850 0.8401 -0.0004 31 1 4.5582 0.3369 -1.0344 32 1 2.9376 0.3310 -1.7777 33 1 4.6839 -0.4058 -3.3980 34 1 3.5220 -1.7095 -3.0533 35 1 4.9554 -3.3005 -3.8800 36 1 6.4249 -3.8290 -2.9493 37 1 1.7123 -4.8309 -4.2439 38 1 3.4151 -4.6396 -4.8771 39 1 2.4982 -7.6709 -2.3854 40 1 1.2173 -6.4728 -2.8954 41 1 4.9741 -6.0947 -4.2835 42 1 4.5442 -7.4741 -3.1656 43 1 4.8220 -1.7597 0.8970 44 1 3.6456 -3.0400 0.5592 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084854894.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:08:59 Heat of formation + Delta-G solvation = -13.200771 kcal Electronic energy + Delta-G solvation = -31755.096800 eV Core-core repulsion = 27070.725146 eV Total energy + Delta-G solvation = -4684.371654 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.145 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -50.29898 -47.85171 -47.83165 -42.37077 -40.45495 -37.57319 -35.57357 -31.97164 -31.16351 -29.69932 -28.17154 -27.27021 -26.24037 -26.12756 -24.57259 -23.73705 -22.96716 -21.31093 -20.65278 -19.07394 -18.62803 -18.61775 -17.98459 -17.48374 -16.77749 -16.08717 -15.58849 -15.42726 -15.11546 -14.91218 -14.84062 -14.59260 -14.48216 -14.27163 -13.99726 -13.99528 -13.84331 -13.71724 -13.63420 -13.46426 -12.89140 -12.60256 -12.31157 -12.06788 -11.93647 -11.83456 -11.74248 -11.58935 -11.45205 -11.19860 -10.93921 -10.80519 -10.68925 -10.63873 -10.32671 -10.01602 -9.73844 -9.45776 -9.28034 -8.66900 -8.38225 -6.91338 -5.90416 -3.26855 2.33315 2.64305 2.87078 3.20612 3.29823 3.32034 3.49567 3.50335 3.52557 3.88121 4.05956 4.25943 4.36860 4.40201 4.44229 4.45356 4.55672 4.93416 4.97520 5.14720 5.16431 5.19452 5.27150 5.37272 5.40117 5.50016 5.54727 5.56678 5.59264 5.61794 5.68242 5.74185 5.87865 5.94509 6.14393 6.25485 6.31579 6.57124 6.62764 6.78019 6.90355 7.93529 8.06548 8.41318 8.43286 9.03035 9.77648 10.11388 11.25583 Molecular weight = 344.15amu Principal moments of inertia in cm(-1) A = 0.016739 B = 0.003253 C = 0.003079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1672.380513 B = 8604.261464 C = 9092.290410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.025 3.975 3 Si 0.879 3.121 4 H -0.290 1.290 5 H -0.303 1.303 6 H -0.270 1.270 7 C -0.255 4.255 8 H 0.084 0.916 9 N -0.595 5.595 10 C 0.128 3.872 11 C -0.118 4.118 12 C -0.109 4.109 13 H 0.091 0.909 14 C 0.096 3.904 15 N -0.626 5.626 16 C 0.601 3.399 17 O -0.515 6.515 18 C -0.140 4.140 19 C -0.071 4.071 20 C -0.227 4.227 21 C 0.523 3.477 22 F -0.174 7.174 23 F -0.177 7.177 24 F -0.177 7.177 25 C -0.064 4.064 26 C -0.071 4.071 27 C 0.133 3.867 28 H 0.084 0.916 29 C 0.144 3.856 30 H 0.261 0.739 31 H 0.027 0.973 32 H 0.074 0.926 33 H 0.059 0.941 34 H 0.068 0.932 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.095 0.905 38 H 0.091 0.909 39 H 0.090 0.910 40 H 0.094 0.906 41 H 0.091 0.909 42 H 0.088 0.912 43 H 0.025 0.975 44 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.908 -12.549 -12.696 22.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.174 4.174 3 Si 0.710 3.290 4 H -0.218 1.218 5 H -0.232 1.232 6 H -0.195 1.195 7 C -0.383 4.383 8 H 0.102 0.898 9 N -0.319 5.319 10 C 0.002 3.998 11 C -0.157 4.157 12 C -0.128 4.128 13 H 0.109 0.891 14 C -0.027 4.027 15 N -0.362 5.362 16 C 0.388 3.612 17 O -0.390 6.390 18 C -0.143 4.143 19 C -0.108 4.108 20 C -0.228 4.228 21 C 0.469 3.531 22 F -0.156 7.156 23 F -0.159 7.159 24 F -0.159 7.159 25 C -0.102 4.102 26 C -0.109 4.109 27 C 0.029 3.971 28 H 0.102 0.898 29 C 0.017 3.983 30 H 0.071 0.929 31 H 0.045 0.955 32 H 0.092 0.908 33 H 0.078 0.922 34 H 0.086 0.914 35 H 0.097 0.903 36 H 0.099 0.901 37 H 0.113 0.887 38 H 0.109 0.891 39 H 0.108 0.892 40 H 0.112 0.888 41 H 0.109 0.891 42 H 0.106 0.894 43 H 0.042 0.958 44 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 12.265 -12.755 -12.075 21.422 hybrid contribution 0.380 0.695 -0.423 0.898 sum 12.645 -12.059 -12.498 21.483 Atomic orbital electron populations 1.69864 1.05773 1.26375 1.52980 1.25286 0.95163 0.97399 0.99563 0.86963 0.80322 0.84914 0.76830 1.21772 1.23173 1.19495 1.18932 0.85303 0.94784 1.39319 0.89798 1.43782 1.09030 1.35782 1.43263 1.21214 0.97779 0.92070 0.88706 1.21864 0.96444 0.98391 0.99002 1.22866 1.00005 0.94593 0.95305 0.89098 1.23608 0.93725 0.92944 0.92440 1.49714 1.37228 1.33689 1.15523 1.17773 0.78839 0.78002 0.86570 1.90756 1.51622 1.68261 1.28341 1.23658 0.98872 0.97116 0.94665 1.24470 1.03042 0.89971 0.93357 1.25356 1.03101 0.99183 0.95172 1.18412 0.74460 0.78185 0.82027 1.93212 1.33378 1.95184 1.93790 1.93193 1.75056 1.91822 1.55801 1.93197 1.94276 1.35773 1.92612 1.23702 0.99628 0.97449 0.89404 1.23988 0.93173 0.98616 0.95079 1.22693 0.95435 0.85390 0.93563 0.89826 1.20338 0.92095 0.93465 0.92377 0.92874 0.95515 0.90756 0.92224 0.91377 0.90324 0.90065 0.88679 0.89093 0.89176 0.88755 0.89106 0.89380 0.95772 0.90102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.19 13.97 55.49 0.78 -27.41 16 2 C 0.02 0.71 5.18 -17.43 -0.09 0.62 16 3 Si 0.88 22.16 24.44 -169.99 -4.15 18.01 16 4 H -0.29 -6.99 6.71 56.52 0.38 -6.61 16 5 H -0.30 -7.85 7.11 56.52 0.40 -7.45 16 6 H -0.27 -6.63 6.73 56.52 0.38 -6.25 16 7 C -0.26 -7.29 9.94 -15.06 -0.15 -7.44 16 8 H 0.08 2.69 8.02 -52.49 -0.42 2.26 16 9 N -0.60 -14.07 2.74 -174.57 -0.48 -14.55 16 10 C 0.13 2.65 4.18 -3.92 -0.02 2.64 16 11 C -0.12 -1.86 5.67 -26.67 -0.15 -2.01 16 12 C -0.11 -1.38 4.35 -89.96 -0.39 -1.77 16 13 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 14 C 0.10 1.00 7.96 -3.00 -0.02 0.98 16 15 N -0.63 -9.22 3.38 -172.47 -0.58 -9.80 16 16 C 0.60 10.04 8.10 -10.98 -0.09 9.95 16 17 O -0.52 -11.02 16.21 5.56 0.09 -10.93 16 18 C -0.14 -1.75 3.14 -172.26 -0.54 -2.29 16 19 C -0.07 -0.77 7.95 -24.74 -0.20 -0.96 16 20 C -0.23 -2.26 3.03 -169.85 -0.51 -2.78 16 21 C 0.52 5.34 3.63 37.15 0.13 5.47 16 22 F -0.17 -1.95 17.32 2.25 0.04 -1.91 16 23 F -0.18 -1.81 17.32 2.25 0.04 -1.77 16 24 F -0.18 -1.85 17.32 2.25 0.04 -1.81 16 25 C -0.06 -0.74 7.78 -26.72 -0.21 -0.95 16 26 C -0.07 -0.65 7.84 -25.96 -0.20 -0.86 16 27 C 0.13 2.01 4.33 -69.04 -0.30 1.71 16 28 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 29 C 0.14 2.91 6.18 -5.19 -0.03 2.88 16 30 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 31 H 0.03 0.54 7.31 -51.93 -0.38 0.16 16 32 H 0.07 1.73 4.50 -51.93 -0.23 1.49 16 33 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.07 1.19 7.71 -51.93 -0.40 0.79 16 35 H 0.08 0.74 7.48 -51.93 -0.39 0.35 16 36 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.09 1.12 7.91 -51.93 -0.41 0.70 16 38 H 0.09 0.83 7.48 -51.93 -0.39 0.44 16 39 H 0.09 0.96 7.95 -51.93 -0.41 0.55 16 40 H 0.09 1.14 7.91 -51.93 -0.41 0.73 16 41 H 0.09 0.68 7.97 -51.93 -0.41 0.27 16 42 H 0.09 0.75 7.93 -51.93 -0.41 0.33 16 43 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 44 H 0.08 1.86 6.32 -51.93 -0.33 1.53 16 LS Contribution 359.98 15.07 5.42 5.42 Total: -1.00 -33.66 359.98 -7.47 -41.13 By element: Atomic # 1 Polarization: 4.32 SS G_CDS: -5.89 Total: -1.57 kcal Atomic # 6 Polarization: 7.96 SS G_CDS: -2.77 Total: 5.19 kcal Atomic # 7 Polarization: -51.47 SS G_CDS: -0.29 Total: -51.76 kcal Atomic # 8 Polarization: -11.02 SS G_CDS: 0.09 Total: -10.93 kcal Atomic # 9 Polarization: -5.61 SS G_CDS: 0.12 Total: -5.50 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -4.15 Total: 18.01 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -33.66 -7.47 -41.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084854894.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.926 kcal (2) G-P(sol) polarization free energy of solvation -33.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds