Wall clock time and date at job start Wed Apr 1 2020 02:12:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86797 * 120.00061 * 2 1 4 4 H 1.48501 * 109.47294 * 265.90059 * 3 2 1 5 5 H 1.48502 * 109.47302 * 25.90713 * 3 2 1 6 6 H 1.48506 * 109.47100 * 145.90399 * 3 2 1 7 7 C 1.38818 * 119.99984 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99799 * 348.00295 * 7 2 1 9 9 N 1.36929 * 120.00068 * 168.00497 * 7 2 1 10 10 C 1.46932 * 120.63313 * 147.76930 * 9 7 2 11 11 C 1.53190 * 108.77222 * 126.11543 * 10 9 7 12 12 C 1.53035 * 109.31559 * 54.64042 * 11 10 9 13 13 H 1.08997 * 109.46538 * 178.60922 * 12 11 10 14 14 N 1.46503 * 109.46315 * 58.63732 * 12 11 10 15 15 C 1.34772 * 119.99764 * 84.99826 * 14 12 11 16 16 O 1.21627 * 120.00401 * 5.16129 * 15 14 12 17 17 C 1.47171 * 119.99854 * 185.15956 * 15 14 12 18 18 C 1.38400 * 126.88168 * 5.31860 * 17 15 14 19 19 C 1.39676 * 105.35779 * 179.91769 * 18 17 15 20 20 N 1.30866 * 107.85983 * 0.35237 * 19 18 17 21 21 N 1.28438 * 110.92753 * 359.77327 * 20 19 18 22 22 C 1.46501 * 125.19126 * 180.02562 * 21 20 19 23 23 C 1.52999 * 109.46907 * 264.47111 * 22 21 20 24 24 F 1.39900 * 109.47455 * 64.99532 * 23 22 21 25 25 F 1.39903 * 109.46874 * 184.99898 * 23 22 21 26 26 C 1.53042 * 109.53692 * 298.63305 * 12 11 10 27 27 H 1.09002 * 109.49765 * 301.37924 * 26 12 11 28 28 O 1.42897 * 109.49657 * 181.31665 * 26 12 11 29 29 C 1.46924 * 120.63214 * 327.49079 * 9 7 2 30 30 H 0.97001 * 120.00111 * 359.97438 * 1 2 3 31 31 H 1.08998 * 109.58942 * 245.90623 * 10 9 7 32 32 H 1.09001 * 109.58405 * 6.19190 * 10 9 7 33 33 H 1.09007 * 109.49561 * 174.59169 * 11 10 9 34 34 H 1.09001 * 109.50040 * 294.65253 * 11 10 9 35 35 H 0.96997 * 119.99974 * 265.00518 * 14 12 11 36 36 H 1.08005 * 127.32446 * 0.03481 * 18 17 15 37 37 H 1.07999 * 126.07211 * 180.09065 * 19 18 17 38 38 H 1.09000 * 109.47026 * 24.46544 * 22 21 20 39 39 H 1.08995 * 109.47154 * 144.46869 * 22 21 20 40 40 H 1.08999 * 109.46876 * 304.99521 * 23 22 21 41 41 H 0.96702 * 113.99749 * 179.97438 * 28 26 12 42 42 H 1.09005 * 109.58624 * 353.67129 * 29 9 7 43 43 H 1.09000 * 109.58994 * 114.09099 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.5844 1.9964 -1.3965 5 1 1.4070 2.6761 0.6117 6 1 3.5018 1.4667 0.7849 7 6 2.0102 -1.2022 -0.0005 8 1 1.4879 -2.1274 0.1935 9 7 3.3571 -1.2151 -0.2470 10 6 4.2250 -2.2160 0.3885 11 6 5.0219 -2.9403 -0.7010 12 6 5.7687 -1.9102 -1.5513 13 1 6.3562 -2.4244 -2.3119 14 7 6.6603 -1.1243 -0.6948 15 6 7.8925 -1.5850 -0.4021 16 8 8.2998 -2.6058 -0.9232 17 6 8.7454 -0.8530 0.5479 18 6 8.3929 0.2568 1.2960 19 6 9.5313 0.5795 2.0382 20 7 10.4686 -0.2800 1.7294 21 7 10.0454 -1.1292 0.8637 22 6 10.8360 -2.2268 0.3013 23 6 11.4434 -1.7866 -1.0322 24 9 12.3557 -0.7496 -0.8094 25 9 12.1032 -2.8691 -1.6240 26 6 4.7611 -0.9786 -2.2288 27 1 4.0820 -1.5653 -2.8474 28 8 5.4577 -0.0365 -3.0467 29 6 3.9611 -0.2320 -1.1567 30 1 -0.4850 0.8400 0.0004 31 1 4.9114 -1.7211 1.0755 32 1 3.6145 -2.9341 0.9360 33 1 5.7390 -3.6180 -0.2374 34 1 4.3401 -3.5092 -1.3332 35 1 6.3637 -0.2724 -0.3382 36 1 7.4395 0.7643 1.3054 37 1 9.6232 1.3961 2.7389 38 1 11.6344 -2.4918 0.9943 39 1 10.1931 -3.0920 0.1396 40 1 10.6514 -1.4376 -1.6946 41 1 4.8799 0.5869 -3.5079 42 1 3.1764 0.3576 -1.6307 43 1 4.6260 0.4247 -0.5957 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090266142.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:12:25 Heat of formation + Delta-G solvation = -73.687731 kcal Electronic energy + Delta-G solvation = -31620.060533 eV Core-core repulsion = 26952.985929 eV Total energy + Delta-G solvation = -4667.074604 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.145 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.34098 -47.34070 -42.80815 -40.06615 -38.19622 -35.65678 -34.81609 -34.07926 -32.39133 -31.30771 -30.15692 -29.30257 -29.15215 -25.56854 -24.37579 -23.53097 -22.98716 -22.08599 -21.61858 -20.37818 -19.16104 -18.67727 -17.85621 -17.67965 -17.13629 -17.05466 -16.93978 -16.31754 -15.63266 -15.52119 -15.35940 -14.89622 -14.52089 -14.41110 -14.33913 -14.02563 -13.84226 -13.77180 -13.68660 -13.56322 -13.17536 -13.13046 -12.75310 -12.55333 -12.40455 -11.97697 -11.62911 -11.59603 -11.23628 -11.13540 -11.08252 -10.65112 -10.45547 -10.22908 -9.93588 -9.77357 -9.60338 -9.54129 -9.36096 -9.00512 -8.79133 -7.11559 -6.09768 -3.56422 0.96886 1.86743 2.35251 2.98274 3.06342 3.11234 3.29386 3.34428 3.34649 3.81910 3.94019 4.17246 4.33496 4.35460 4.42689 4.49767 4.78136 4.84004 4.90300 5.01065 5.06460 5.15932 5.32886 5.35601 5.42412 5.51770 5.53822 5.63161 5.83789 6.03060 6.13863 6.18965 6.20921 6.31702 6.34071 6.44242 6.48806 6.67585 7.36440 7.69268 7.74048 7.86096 8.01129 8.18390 8.74506 9.52330 9.88664 11.05901 Molecular weight = 344.14amu Principal moments of inertia in cm(-1) A = 0.017493 B = 0.003286 C = 0.003088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1600.292783 B = 8518.475838 C = 9065.262914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.025 3.975 3 Si 0.896 3.104 4 H -0.288 1.288 5 H -0.302 1.302 6 H -0.271 1.271 7 C -0.266 4.266 8 H 0.088 0.912 9 N -0.601 5.601 10 C 0.148 3.852 11 C -0.147 4.147 12 C 0.165 3.835 13 H 0.090 0.910 14 N -0.687 5.687 15 C 0.590 3.410 16 O -0.551 6.551 17 C -0.035 4.035 18 C -0.177 4.177 19 C 0.006 3.994 20 N -0.270 5.270 21 N -0.266 5.266 22 C 0.076 3.924 23 C 0.258 3.742 24 F -0.197 7.197 25 F -0.190 7.190 26 C 0.076 3.924 27 H 0.076 0.924 28 O -0.571 6.571 29 C 0.091 3.909 30 H 0.265 0.735 31 H 0.025 0.975 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.079 0.921 35 H 0.406 0.594 36 H 0.165 0.835 37 H 0.191 0.809 38 H 0.123 0.877 39 H 0.145 0.855 40 H 0.117 0.883 41 H 0.379 0.621 42 H 0.081 0.919 43 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.449 -1.109 -0.790 18.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.174 4.174 3 Si 0.727 3.273 4 H -0.216 1.216 5 H -0.231 1.231 6 H -0.196 1.196 7 C -0.395 4.395 8 H 0.105 0.895 9 N -0.326 5.326 10 C 0.022 3.978 11 C -0.187 4.187 12 C 0.061 3.939 13 H 0.108 0.892 14 N -0.338 5.338 15 C 0.375 3.625 16 O -0.431 6.431 17 C -0.162 4.162 18 C -0.205 4.205 19 C -0.171 4.171 20 N -0.100 5.100 21 N -0.054 5.054 22 C -0.047 4.047 23 C 0.203 3.797 24 F -0.178 7.178 25 F -0.172 7.172 26 C 0.015 3.985 27 H 0.094 0.906 28 O -0.376 6.376 29 C -0.035 4.035 30 H 0.075 0.925 31 H 0.043 0.957 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.097 0.903 35 H 0.243 0.757 36 H 0.182 0.818 37 H 0.208 0.792 38 H 0.142 0.858 39 H 0.163 0.837 40 H 0.135 0.865 41 H 0.226 0.774 42 H 0.099 0.901 43 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 20.271 -2.488 -0.754 20.437 hybrid contribution -1.034 1.998 -0.196 2.258 sum 19.238 -0.490 -0.951 19.267 Atomic orbital electron populations 1.69750 1.05702 1.26773 1.52928 1.25433 0.95331 0.97833 0.98832 0.86858 0.79396 0.84029 0.77034 1.21613 1.23057 1.19635 1.18927 0.81084 0.94251 1.45190 0.89480 1.44250 1.05037 1.34682 1.48623 1.20969 0.92519 0.91683 0.92640 1.22437 0.99316 0.97403 0.99519 1.20960 0.89744 0.91451 0.91761 0.89155 1.45706 1.13456 1.24309 1.50323 1.16848 0.81428 0.83889 0.80323 1.90763 1.73660 1.25266 1.53372 1.21549 0.87740 1.01391 1.05520 1.22400 1.01375 0.97174 0.99594 1.23666 0.89918 1.00471 1.03024 1.73274 1.27234 1.02327 1.07190 1.45194 1.07771 1.22493 1.29904 1.23043 0.98354 0.88629 0.94635 1.22048 0.86837 0.75815 0.95045 1.93038 1.70181 1.58946 1.95670 1.93020 1.83151 1.56097 1.84908 1.22765 0.92603 0.90896 0.92222 0.90620 1.86435 1.38224 1.48476 1.64479 1.22158 0.96569 0.93099 0.91684 0.92512 0.95678 0.91273 0.91262 0.90285 0.75709 0.81781 0.79219 0.85837 0.83699 0.86544 0.77411 0.90106 0.95205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.32 13.97 55.49 0.78 -25.54 16 2 C 0.03 0.68 5.35 -17.43 -0.09 0.58 16 3 Si 0.90 20.53 24.24 -169.99 -4.12 16.41 16 4 H -0.29 -6.20 6.42 56.52 0.36 -5.84 16 5 H -0.30 -7.22 7.11 56.52 0.40 -6.82 16 6 H -0.27 -5.97 6.57 56.52 0.37 -5.59 16 7 C -0.27 -6.82 10.06 -15.06 -0.15 -6.97 16 8 H 0.09 2.42 8.06 -52.48 -0.42 2.00 16 9 N -0.60 -12.55 2.74 -172.31 -0.47 -13.02 16 10 C 0.15 2.59 6.26 -3.71 -0.02 2.57 16 11 C -0.15 -2.19 5.77 -26.61 -0.15 -2.35 16 12 C 0.16 2.43 2.51 -67.89 -0.17 2.26 16 13 H 0.09 1.37 7.51 -51.93 -0.39 0.98 16 14 N -0.69 -9.54 4.13 -54.92 -0.23 -9.77 16 15 C 0.59 8.14 7.76 -12.64 -0.10 8.04 16 16 O -0.55 -8.31 14.42 5.25 0.08 -8.23 16 17 C -0.03 -0.44 6.96 -82.06 -0.57 -1.01 16 18 C -0.18 -1.97 10.50 -38.99 -0.41 -2.38 16 19 C 0.01 0.07 12.03 -17.43 -0.21 -0.14 16 20 N -0.27 -3.32 11.90 30.59 0.36 -2.95 16 21 N -0.27 -3.20 3.33 -57.14 -0.19 -3.39 16 22 C 0.08 0.76 5.89 -4.04 -0.02 0.73 16 23 C 0.26 2.71 5.55 37.16 0.21 2.92 16 24 F -0.20 -2.40 17.32 2.25 0.04 -2.36 16 25 F -0.19 -2.08 17.34 2.25 0.04 -2.04 16 26 C 0.08 1.18 3.36 -26.61 -0.09 1.09 16 27 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 28 O -0.57 -8.08 13.21 -35.23 -0.47 -8.55 16 29 C 0.09 1.69 3.48 -3.71 -0.01 1.68 16 30 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 31 H 0.03 0.43 7.74 -51.93 -0.40 0.03 16 32 H 0.07 1.24 7.93 -51.93 -0.41 0.83 16 33 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.41 5.53 5.94 -40.82 -0.24 5.29 16 36 H 0.16 1.58 7.62 -52.48 -0.40 1.18 16 37 H 0.19 1.38 8.06 -52.49 -0.42 0.96 16 38 H 0.12 1.02 8.14 -51.93 -0.42 0.59 16 39 H 0.15 1.43 6.52 -51.93 -0.34 1.09 16 40 H 0.12 1.23 8.14 -51.93 -0.42 0.80 16 41 H 0.38 4.13 9.08 45.56 0.41 4.54 16 42 H 0.08 1.65 4.39 -51.93 -0.23 1.42 16 43 H 0.03 0.55 5.42 -51.93 -0.28 0.26 16 LS Contribution 355.47 15.07 5.36 5.36 Total: -1.00 -31.22 355.47 -5.07 -36.29 By element: Atomic # 1 Polarization: 15.22 SS G_CDS: -4.44 Total: 10.78 kcal Atomic # 6 Polarization: 8.83 SS G_CDS: -1.80 Total: 7.03 kcal Atomic # 7 Polarization: -54.92 SS G_CDS: 0.25 Total: -54.67 kcal Atomic # 8 Polarization: -16.39 SS G_CDS: -0.39 Total: -16.78 kcal Atomic # 9 Polarization: -4.48 SS G_CDS: 0.08 Total: -4.40 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -4.12 Total: 16.41 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -31.22 -5.07 -36.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090266142.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.402 kcal (2) G-P(sol) polarization free energy of solvation -31.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds