Wall clock time and date at job start Wed Apr 1 2020 02:12:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86798 * 120.00115 * 2 1 4 4 H 1.48503 * 109.47372 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47304 * 300.00237 * 3 2 1 6 6 H 1.48501 * 109.47116 * 59.99982 * 3 2 1 7 7 C 1.38811 * 119.99851 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00114 * 168.52483 * 7 2 1 9 9 N 1.36937 * 119.99887 * 348.51575 * 7 2 1 10 10 C 1.46923 * 120.62977 * 322.88566 * 9 7 2 11 11 C 1.53191 * 108.77746 * 233.58593 * 10 9 7 12 12 C 1.53044 * 109.31530 * 305.37002 * 11 10 9 13 13 H 1.08994 * 109.45938 * 181.38685 * 12 11 10 14 14 N 1.46501 * 109.45596 * 301.35677 * 12 11 10 15 15 C 1.34773 * 120.00040 * 274.99476 * 14 12 11 16 16 O 1.21629 * 119.99980 * 4.99909 * 15 14 12 17 17 C 1.47164 * 120.00089 * 184.99301 * 15 14 12 18 18 C 1.38411 * 126.88447 * 356.07637 * 17 15 14 19 19 C 1.39667 * 105.36040 * 180.02562 * 18 17 15 20 20 N 1.30869 * 107.86551 * 359.97438 * 19 18 17 21 21 N 1.28451 * 110.92072 * 359.71333 * 20 19 18 22 22 C 1.46504 * 125.18685 * 180.27782 * 21 20 19 23 23 C 1.52999 * 109.46832 * 275.79146 * 22 21 20 24 24 F 1.39904 * 109.46917 * 175.00365 * 23 22 21 25 25 F 1.39901 * 109.47374 * 294.99791 * 23 22 21 26 26 C 1.53353 * 109.60678 * 61.37014 * 12 11 10 27 27 H 1.08996 * 109.46956 * 58.54819 * 26 12 11 28 28 O 1.42902 * 109.68272 * 178.74959 * 26 12 11 29 29 C 1.46921 * 120.62715 * 142.86891 * 9 7 2 30 30 H 0.97002 * 119.99579 * 0.02562 * 1 2 3 31 31 H 1.08995 * 109.59428 * 353.37987 * 10 9 7 32 32 H 1.09005 * 109.58580 * 113.66097 * 10 9 7 33 33 H 1.09001 * 109.49926 * 65.32116 * 11 10 9 34 34 H 1.08999 * 109.49932 * 185.41543 * 11 10 9 35 35 H 0.96998 * 119.99760 * 95.00247 * 14 12 11 36 36 H 1.07999 * 127.31810 * 359.97438 * 18 17 15 37 37 H 1.08001 * 126.07092 * 180.02562 * 19 18 17 38 38 H 1.08995 * 109.47478 * 35.79078 * 22 21 20 39 39 H 1.09003 * 109.47038 * 155.79377 * 22 21 20 40 40 H 1.08996 * 109.47474 * 55.00456 * 23 22 21 41 41 H 0.96702 * 113.99564 * 179.75501 * 28 26 12 42 42 H 1.09009 * 109.58569 * 246.19383 * 29 9 7 43 43 H 1.08993 * 109.59098 * 6.48072 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3464 0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0741 -1.2115 -0.1866 9 7 1.3461 -2.3763 0.2351 10 6 0.2502 -2.4334 1.2120 11 6 0.5417 -3.5540 2.2150 12 6 0.7772 -4.8628 1.4574 13 1 0.9605 -5.6669 2.1700 14 7 -0.4063 -5.1820 0.6550 15 6 -1.4408 -5.8415 1.2129 16 8 -1.4317 -6.0916 2.4032 17 6 -2.5814 -6.2590 0.3819 18 6 -2.7750 -5.9854 -0.9610 19 6 -3.9907 -6.5891 -1.2900 20 7 -4.4570 -7.1664 -0.2120 21 7 -3.6581 -6.9994 0.7799 22 6 -3.8717 -7.5194 2.1327 23 6 -4.7639 -6.5537 2.9153 24 9 -5.0612 -7.1039 4.1668 25 9 -4.0954 -5.3369 3.0878 26 6 1.9930 -4.7118 0.5350 27 1 2.8689 -4.4496 1.1285 28 8 2.2320 -5.9421 -0.1515 29 6 1.7156 -3.6027 -0.4846 30 1 -0.4849 0.8401 -0.0004 31 1 0.1796 -1.4814 1.7381 32 1 -0.6886 -2.6365 0.6967 33 1 1.4312 -3.3030 2.7927 34 1 -0.3083 -3.6708 2.8873 35 1 -0.4452 -4.9187 -0.2777 36 1 -2.1247 -5.4237 -1.6151 37 1 -4.4619 -6.5818 -2.2617 38 1 -4.3548 -8.4947 2.0751 39 1 -2.9117 -7.6189 2.6395 40 1 -5.6886 -6.3853 2.3635 41 1 2.9866 -5.9151 -0.7558 42 1 0.8967 -3.9037 -1.1381 43 1 2.6104 -3.4215 -1.0800 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090266145.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:12:28 Heat of formation + Delta-G solvation = -80.353092 kcal Electronic energy + Delta-G solvation = -31691.742654 eV Core-core repulsion = 27024.379018 eV Total energy + Delta-G solvation = -4667.363635 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.145 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.13492 -47.12711 -42.64794 -39.73653 -37.84815 -35.46601 -34.57193 -33.84886 -32.07418 -31.01445 -29.84635 -29.14283 -28.60130 -25.43302 -24.17581 -23.36051 -22.32611 -22.02979 -21.48014 -20.22334 -18.80171 -18.48350 -17.63025 -17.51537 -17.08676 -16.89139 -16.53597 -15.95700 -15.49949 -15.04756 -14.94955 -14.60900 -14.38340 -14.34477 -14.04122 -13.87878 -13.77082 -13.54071 -13.47889 -13.28555 -12.88378 -12.74483 -12.49612 -12.33536 -12.04899 -11.69750 -11.45824 -11.19282 -10.98524 -10.94876 -10.72897 -10.43849 -10.27157 -10.02332 -9.96029 -9.77282 -9.44784 -9.38461 -9.17690 -8.70391 -8.57429 -6.67962 -5.90820 -3.45933 1.16979 2.03186 2.47925 3.26052 3.29739 3.31324 3.38225 3.39584 3.53132 3.91739 4.09511 4.31095 4.44718 4.47914 4.60330 4.68627 4.99154 5.04570 5.22317 5.24874 5.27357 5.41975 5.49654 5.51248 5.64818 5.68661 5.89232 5.99694 6.19535 6.33691 6.41676 6.47975 6.48729 6.62115 6.64931 6.82637 7.21078 7.52099 7.65124 7.70375 7.86565 7.88030 8.32122 8.38123 9.09013 9.67855 10.28762 11.16825 Molecular weight = 344.14amu Principal moments of inertia in cm(-1) A = 0.013583 B = 0.003317 C = 0.003145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2060.910151 B = 8440.016016 C = 8899.517402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.016 3.984 3 Si 0.903 3.097 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.288 1.288 7 C -0.267 4.267 8 H 0.063 0.937 9 N -0.584 5.584 10 C 0.176 3.824 11 C -0.154 4.154 12 C 0.170 3.830 13 H 0.080 0.920 14 N -0.685 5.685 15 C 0.588 3.412 16 O -0.543 6.543 17 C -0.016 4.016 18 C -0.182 4.182 19 C 0.009 3.991 20 N -0.286 5.286 21 N -0.269 5.269 22 C 0.070 3.930 23 C 0.257 3.743 24 F -0.195 7.195 25 F -0.185 7.185 26 C 0.075 3.925 27 H 0.068 0.932 28 O -0.571 6.571 29 C 0.118 3.882 30 H 0.256 0.744 31 H 0.078 0.922 32 H 0.024 0.976 33 H 0.068 0.932 34 H 0.066 0.934 35 H 0.406 0.594 36 H 0.165 0.835 37 H 0.190 0.810 38 H 0.126 0.874 39 H 0.142 0.858 40 H 0.114 0.886 41 H 0.375 0.625 42 H 0.022 0.978 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.866 -14.813 -0.215 15.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.185 4.185 3 Si 0.732 3.268 4 H -0.201 1.201 5 H -0.215 1.215 6 H -0.214 1.214 7 C -0.397 4.397 8 H 0.080 0.920 9 N -0.309 5.309 10 C 0.050 3.950 11 C -0.194 4.194 12 C 0.066 3.934 13 H 0.098 0.902 14 N -0.336 5.336 15 C 0.372 3.628 16 O -0.422 6.422 17 C -0.143 4.143 18 C -0.211 4.211 19 C -0.168 4.168 20 N -0.117 5.117 21 N -0.056 5.056 22 C -0.052 4.052 23 C 0.202 3.798 24 F -0.176 7.176 25 F -0.166 7.166 26 C 0.014 3.986 27 H 0.086 0.914 28 O -0.376 6.376 29 C -0.009 4.009 30 H 0.066 0.934 31 H 0.096 0.904 32 H 0.042 0.958 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.242 0.758 36 H 0.182 0.818 37 H 0.207 0.793 38 H 0.144 0.856 39 H 0.160 0.840 40 H 0.132 0.868 41 H 0.222 0.778 42 H 0.039 0.961 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -7.363 -15.701 1.558 17.412 hybrid contribution 1.454 1.816 -1.059 2.556 sum -5.909 -13.885 0.499 15.098 Atomic orbital electron populations 1.70001 1.05411 1.25772 1.52504 1.25310 0.95321 0.98665 0.99185 0.86235 0.79441 0.83714 0.77389 1.20090 1.21494 1.21414 1.19101 0.90802 0.83696 1.46066 0.91973 1.43888 1.39615 1.04631 1.42717 1.20693 0.89657 0.95835 0.88774 1.22604 1.01923 0.95456 0.99456 1.20955 0.82271 0.98117 0.92075 0.90171 1.45621 1.16476 1.56077 1.15388 1.16812 0.81289 0.78418 0.86243 1.90755 1.79552 1.57276 1.14602 1.21573 0.93704 1.03629 0.95430 1.22373 0.99915 1.05246 0.93539 1.23609 0.95626 0.99986 0.97602 1.73175 1.19416 1.23255 0.95840 1.45165 1.14049 1.37938 1.08472 1.23118 1.05750 0.97955 0.78367 1.22029 0.95907 0.80063 0.81757 1.93011 1.94028 1.85902 1.44705 1.93112 1.82474 1.45320 1.95737 1.22811 0.96563 0.84545 0.94691 0.91391 1.86466 1.54315 1.35117 1.61677 1.21564 0.98737 0.87801 0.92843 0.93442 0.90385 0.95761 0.91319 0.91541 0.75751 0.81760 0.79318 0.85617 0.84009 0.86823 0.77838 0.96055 0.92155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.95 11.56 55.49 0.64 -24.31 16 2 C 0.02 0.42 4.99 -17.43 -0.09 0.33 16 3 Si 0.90 20.77 29.57 -169.99 -5.03 15.74 16 4 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 5 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 6 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 7 C -0.27 -6.87 9.50 -15.06 -0.14 -7.01 16 8 H 0.06 1.57 7.86 -52.48 -0.41 1.16 16 9 N -0.58 -13.42 2.95 -172.32 -0.51 -13.92 16 10 C 0.18 3.97 4.97 -3.71 -0.02 3.96 16 11 C -0.15 -2.92 5.77 -26.61 -0.15 -3.07 16 12 C 0.17 2.90 2.44 -67.72 -0.17 2.74 16 13 H 0.08 1.40 7.65 -51.93 -0.40 1.00 16 14 N -0.68 -11.14 4.15 -54.77 -0.23 -11.37 16 15 C 0.59 9.74 7.75 -12.64 -0.10 9.65 16 16 O -0.54 -9.96 13.66 5.25 0.07 -9.88 16 17 C -0.02 -0.23 6.96 -82.06 -0.57 -0.80 16 18 C -0.18 -2.28 10.50 -38.98 -0.41 -2.69 16 19 C 0.01 0.10 12.03 -17.43 -0.21 -0.11 16 20 N -0.29 -3.59 11.90 30.59 0.36 -3.22 16 21 N -0.27 -3.53 3.33 -57.14 -0.19 -3.72 16 22 C 0.07 0.78 6.10 -4.04 -0.02 0.75 16 23 C 0.26 2.95 5.55 37.16 0.21 3.15 16 24 F -0.20 -2.27 17.34 2.25 0.04 -2.23 16 25 F -0.19 -2.90 16.67 2.25 0.04 -2.87 16 26 C 0.07 1.19 3.38 -26.45 -0.09 1.11 16 27 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 28 O -0.57 -7.99 13.23 -35.23 -0.47 -8.46 16 29 C 0.12 2.18 5.83 -3.71 -0.02 2.16 16 30 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 31 H 0.08 2.01 6.60 -51.93 -0.34 1.67 16 32 H 0.02 0.58 7.74 -51.93 -0.40 0.18 16 33 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 34 H 0.07 1.29 8.11 -51.93 -0.42 0.87 16 35 H 0.41 6.35 5.89 -40.82 -0.24 6.11 16 36 H 0.16 1.79 7.58 -52.49 -0.40 1.39 16 37 H 0.19 1.44 8.06 -52.49 -0.42 1.02 16 38 H 0.13 0.99 8.14 -51.93 -0.42 0.56 16 39 H 0.14 1.75 6.10 -51.93 -0.32 1.44 16 40 H 0.11 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.37 3.69 9.08 45.56 0.41 4.10 16 42 H 0.02 0.40 6.64 -51.92 -0.34 0.05 16 43 H 0.06 1.08 7.93 -51.93 -0.41 0.67 16 LS Contribution 361.58 15.07 5.45 5.45 Total: -1.00 -31.92 361.58 -6.12 -38.04 By element: Atomic # 1 Polarization: 15.11 SS G_CDS: -4.52 Total: 10.59 kcal Atomic # 6 Polarization: 11.94 SS G_CDS: -1.79 Total: 10.16 kcal Atomic # 7 Polarization: -56.62 SS G_CDS: 0.08 Total: -56.54 kcal Atomic # 8 Polarization: -17.95 SS G_CDS: -0.39 Total: -18.34 kcal Atomic # 9 Polarization: -5.17 SS G_CDS: 0.08 Total: -5.09 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.03 Total: 15.74 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.92 -6.12 -38.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090266145.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.311 kcal (2) G-P(sol) polarization free energy of solvation -31.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds