Wall clock time and date at job start Wed Apr 1 2020 02:21:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.33811 * 125.07532 * 2 1 4 4 C 1.34905 * 111.35288 * 180.25365 * 3 2 1 5 5 C 1.38961 * 133.12154 * 179.78878 * 4 3 2 6 6 C 1.37843 * 119.97718 * 179.97438 * 5 4 3 7 7 C 1.38682 * 120.65527 * 359.97438 * 6 5 4 8 8 C 1.37844 * 120.19879 * 0.03149 * 7 6 5 9 9 C 1.39112 * 119.62904 * 359.94939 * 8 7 6 10 10 C 1.36054 * 125.07720 * 179.83578 * 2 1 3 11 11 C 1.47080 * 127.13961 * 0.03089 * 10 2 1 12 12 O 1.21649 * 119.99839 * 269.68921 * 11 10 2 13 13 N 1.34778 * 119.99696 * 89.68268 * 11 10 2 14 14 C 1.46500 * 119.99469 * 180.02562 * 13 11 10 15 15 H 1.09002 * 109.46347 * 325.02519 * 14 13 11 16 16 C 1.53042 * 109.46396 * 85.00359 * 14 13 11 17 17 C 1.53188 * 109.31515 * 181.37330 * 16 14 13 18 18 N 1.46930 * 108.77087 * 305.36098 * 17 16 14 19 19 C 1.36938 * 120.63004 * 233.58886 * 18 17 16 20 20 H 1.07993 * 120.00317 * 152.33527 * 19 18 17 21 21 C 1.38819 * 119.99690 * 332.05473 * 19 18 17 22 22 N 1.31617 * 120.00350 * 343.03307 * 21 19 18 23 23 Si 1.86807 * 119.99640 * 163.03284 * 21 19 18 24 24 H 1.48499 * 109.47132 * 0.02562 * 23 21 19 25 25 H 1.48490 * 109.46916 * 120.00029 * 23 21 19 26 26 H 1.48504 * 109.46942 * 240.00273 * 23 21 19 27 27 C 1.46921 * 118.74039 * 53.86419 * 18 17 16 28 28 C 1.53040 * 109.44721 * 205.06073 * 14 13 11 29 29 H 1.08998 * 109.49978 * 298.57610 * 28 14 13 30 30 O 1.42909 * 109.49735 * 58.67277 * 28 14 13 31 31 H 1.09002 * 109.47102 * 270.16616 * 1 2 3 32 32 H 1.09003 * 109.47252 * 30.16684 * 1 2 3 33 33 H 1.08999 * 109.46958 * 150.16284 * 1 2 3 34 34 H 1.08009 * 120.01340 * 359.95048 * 5 4 3 35 35 H 1.07999 * 119.67213 * 180.02562 * 6 5 4 36 36 H 1.07995 * 119.90394 * 179.97438 * 7 6 5 37 37 H 1.08001 * 120.18529 * 180.02562 * 8 7 6 38 38 H 0.97001 * 120.00494 * 0.02562 * 13 11 10 39 39 H 1.08999 * 109.49718 * 61.41731 * 16 14 13 40 40 H 1.09007 * 109.52091 * 301.34020 * 16 14 13 41 41 H 1.09001 * 109.58812 * 185.58009 * 17 16 14 42 42 H 1.08994 * 109.59045 * 65.14674 * 17 16 14 43 43 H 0.96993 * 120.00034 * 180.02562 * 22 21 19 44 44 H 1.09005 * 109.58489 * 65.92388 * 27 18 17 45 45 H 1.09002 * 109.59012 * 186.35237 * 27 18 17 46 46 H 0.96693 * 114.00225 * 180.02562 * 30 28 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.2759 1.0951 0.0000 4 6 3.5864 0.7751 -0.0056 5 6 4.7498 1.5351 -0.0116 6 6 5.9794 0.9122 -0.0159 7 6 6.0711 -0.4716 -0.0138 8 6 4.9281 -1.2422 -0.0080 9 6 3.6819 -0.6240 -0.0032 10 6 2.2888 -1.1134 0.0032 11 6 1.8396 -2.5140 0.0066 12 8 1.6588 -3.0922 1.0615 13 7 1.6282 -3.1566 -1.1591 14 6 1.1802 -4.5514 -1.1557 15 1 1.6339 -5.0765 -0.3151 16 6 -0.3438 -4.5973 -1.0229 17 6 -0.8054 -6.0574 -0.9852 18 7 -0.2819 -6.7496 -2.1708 19 6 -1.1226 -7.4357 -3.0061 20 1 -0.8691 -7.5543 -4.0491 21 6 -2.2980 -7.9837 -2.5108 22 7 -2.4541 -8.1437 -1.2138 23 14 -3.6581 -8.4939 -3.6853 24 1 -3.2379 -8.2123 -5.0815 25 1 -3.9247 -9.9467 -3.5326 26 1 -4.8926 -7.7288 -3.3754 27 6 1.1615 -6.6968 -2.4398 28 6 1.6003 -5.2247 -2.4642 29 1 1.1272 -4.7153 -3.3037 30 8 3.0210 -5.1545 -2.6021 31 1 -0.3633 0.0030 1.0277 32 1 -0.3634 0.8885 -0.5164 33 1 -0.3633 -0.8914 -0.5113 34 1 4.6905 2.6136 -0.0132 35 1 6.8804 1.5077 -0.0202 36 1 7.0407 -0.9470 -0.0177 37 1 4.9998 -2.3198 -0.0060 38 1 1.7726 -2.6956 -2.0003 39 1 -0.7986 -4.0938 -1.8760 40 1 -0.6444 -4.0967 -0.1024 41 1 -1.8947 -6.0966 -0.9905 42 1 -0.4248 -6.5379 -0.0839 43 1 -3.2752 -8.5270 -0.8678 44 1 1.6992 -7.2283 -1.6546 45 1 1.3704 -7.1578 -3.4052 46 1 3.3583 -5.5624 -3.4113 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090292713.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:21:44 Heat of formation + Delta-G solvation = -34.403895 kcal Electronic energy + Delta-G solvation = -30233.513898 eV Core-core repulsion = 26090.079548 eV Total energy + Delta-G solvation = -4143.434350 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.76690 -39.62658 -38.13237 -37.87222 -35.42802 -34.29484 -33.55321 -31.89907 -31.49121 -30.64167 -29.99509 -28.59341 -27.40832 -25.31941 -23.50693 -23.17462 -22.34086 -21.86129 -21.48935 -20.01296 -19.43254 -18.02190 -17.20556 -17.04901 -16.71957 -16.52656 -15.98122 -15.83609 -15.55166 -14.86203 -14.50414 -14.26442 -14.02718 -13.95487 -13.86460 -13.51889 -13.39925 -13.30842 -13.08381 -12.81183 -12.58630 -12.42260 -12.30126 -12.12471 -11.90226 -11.60056 -11.19042 -11.13514 -10.91706 -10.74087 -10.34958 -10.31664 -10.26440 -9.99237 -9.89144 -9.75704 -9.48237 -8.86851 -8.79295 -8.48699 -8.33220 -6.80031 -5.87617 -3.32105 0.62744 1.09288 1.89008 2.34300 2.64536 3.31367 3.36999 3.39932 3.41818 3.49133 4.10767 4.33969 4.43672 4.51193 4.69369 4.82573 4.91289 4.95921 5.05368 5.16663 5.19908 5.27158 5.30153 5.37264 5.45209 5.46711 5.53429 5.66057 5.73174 5.93482 5.96800 5.97456 6.07538 6.12359 6.20858 6.27340 6.39207 6.45521 6.48945 6.62575 6.74451 6.82234 6.88764 7.25540 7.57571 7.69640 7.70739 7.90049 8.34814 8.38099 9.10426 9.72629 10.28564 11.20860 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.020059 B = 0.002615 C = 0.002438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.559242 B =10706.523287 C =11482.020607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.083 3.917 3 O -0.185 6.185 4 C 0.049 3.951 5 C -0.105 4.105 6 C -0.096 4.096 7 C -0.131 4.131 8 C -0.068 4.068 9 C -0.096 4.096 10 C -0.221 4.221 11 C 0.590 3.410 12 O -0.530 6.530 13 N -0.705 5.705 14 C 0.162 3.838 15 H 0.089 0.911 16 C -0.147 4.147 17 C 0.171 3.829 18 N -0.588 5.588 19 C -0.259 4.259 20 H 0.068 0.932 21 C 0.005 3.995 22 N -0.899 5.899 23 Si 0.904 3.096 24 H -0.277 1.277 25 H -0.289 1.289 26 H -0.288 1.288 27 C 0.121 3.879 28 C 0.080 3.920 29 H 0.057 0.943 30 O -0.571 6.571 31 H 0.095 0.905 32 H 0.087 0.913 33 H 0.097 0.903 34 H 0.132 0.868 35 H 0.136 0.864 36 H 0.132 0.868 37 H 0.130 0.870 38 H 0.398 0.602 39 H 0.059 0.941 40 H 0.062 0.938 41 H 0.094 0.906 42 H 0.024 0.976 43 H 0.255 0.745 44 H 0.030 0.970 45 H 0.060 0.940 46 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.850 19.155 -0.601 23.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.034 3.966 3 O -0.086 6.086 4 C 0.002 3.998 5 C -0.124 4.124 6 C -0.115 4.115 7 C -0.149 4.149 8 C -0.086 4.086 9 C -0.097 4.097 10 C -0.225 4.225 11 C 0.374 3.626 12 O -0.406 6.406 13 N -0.354 5.354 14 C 0.058 3.942 15 H 0.107 0.893 16 C -0.187 4.187 17 C 0.045 3.955 18 N -0.312 5.312 19 C -0.388 4.388 20 H 0.085 0.915 21 C -0.194 4.194 22 N -0.542 5.542 23 Si 0.733 3.267 24 H -0.202 1.202 25 H -0.216 1.216 26 H -0.214 1.214 27 C -0.007 4.007 28 C 0.019 3.981 29 H 0.075 0.925 30 O -0.375 6.375 31 H 0.113 0.887 32 H 0.106 0.894 33 H 0.115 0.885 34 H 0.150 0.850 35 H 0.153 0.847 36 H 0.149 0.851 37 H 0.148 0.852 38 H 0.231 0.769 39 H 0.077 0.923 40 H 0.081 0.919 41 H 0.112 0.888 42 H 0.042 0.958 43 H 0.065 0.935 44 H 0.047 0.953 45 H 0.079 0.921 46 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 12.425 19.210 0.814 22.893 hybrid contribution -0.525 -0.508 -1.441 1.616 sum 11.901 18.702 -0.627 22.176 Atomic orbital electron populations 1.20596 0.83741 1.05028 1.04863 1.22585 0.93841 0.82493 0.97721 1.83776 1.15243 1.33714 1.75894 1.19512 0.82900 0.93234 1.04106 1.19922 0.88034 0.99646 1.04780 1.20915 0.96339 0.94765 0.99431 1.21064 0.98321 0.93681 1.01831 1.20599 0.89963 1.00524 0.97471 1.19487 0.92696 0.92599 1.04912 1.20715 0.92240 0.94228 1.15352 1.17085 0.77035 0.84203 0.84259 1.90836 1.51351 1.67288 1.31143 1.46114 1.67498 1.13946 1.07846 1.21068 0.95519 0.79668 0.97947 0.89342 1.22617 0.92807 1.02161 1.01126 1.20833 1.00731 0.85538 0.88392 1.44075 1.00076 1.58610 1.28460 1.19200 1.00935 1.28435 0.90269 0.91475 1.25088 1.00330 0.98237 0.95777 1.70038 1.26344 1.46690 1.11158 0.86210 0.82141 0.77905 0.80406 1.20227 1.21638 1.21442 1.21617 0.87477 0.91930 0.99643 1.22866 0.80086 0.98836 0.96290 0.92539 1.86481 1.21942 1.82414 1.46693 0.88694 0.89449 0.88455 0.84967 0.84663 0.85056 0.85216 0.76870 0.92254 0.91894 0.88787 0.95779 0.93455 0.95259 0.92124 0.77985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.80 10.20 36.00 0.37 -0.43 16 2 C 0.08 1.03 7.30 -35.10 -0.26 0.78 16 3 O -0.19 -2.31 10.53 5.33 0.06 -2.25 16 4 C 0.05 0.61 7.39 -38.56 -0.28 0.32 16 5 C -0.11 -1.00 10.06 -39.46 -0.40 -1.40 16 6 C -0.10 -0.79 10.01 -39.56 -0.40 -1.19 16 7 C -0.13 -1.22 10.04 -39.56 -0.40 -1.62 16 8 C -0.07 -0.82 10.09 -39.40 -0.40 -1.22 16 9 C -0.10 -1.31 6.39 -104.98 -0.67 -1.98 16 10 C -0.22 -3.21 6.06 -103.25 -0.63 -3.83 16 11 C 0.59 9.85 7.16 -12.67 -0.09 9.76 16 12 O -0.53 -10.92 16.77 5.23 0.09 -10.83 16 13 N -0.70 -10.85 4.91 -54.95 -0.27 -11.12 16 14 C 0.16 2.89 2.12 -67.89 -0.14 2.74 16 15 H 0.09 1.83 7.57 -51.93 -0.39 1.44 16 16 C -0.15 -2.80 5.65 -26.61 -0.15 -2.96 16 17 C 0.17 4.02 5.30 -3.71 -0.02 4.00 16 18 N -0.59 -14.16 2.99 -172.05 -0.51 -14.67 16 19 C -0.26 -6.82 9.58 -15.06 -0.14 -6.96 16 20 H 0.07 1.72 7.89 -52.49 -0.41 1.31 16 21 C 0.00 0.13 4.92 -17.43 -0.09 0.05 16 22 N -0.90 -25.53 11.18 55.49 0.62 -24.91 16 23 Si 0.90 21.02 29.59 -169.99 -5.03 15.99 16 24 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 25 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 26 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 27 C 0.12 2.42 6.17 -3.49 -0.02 2.40 16 28 C 0.08 1.34 3.16 -26.39 -0.08 1.26 16 29 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 30 O -0.57 -8.46 13.16 -35.23 -0.46 -8.92 16 31 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.10 0.93 7.86 -51.93 -0.41 0.52 16 34 H 0.13 0.92 8.06 -52.48 -0.42 0.50 16 35 H 0.14 0.69 8.06 -52.49 -0.42 0.26 16 36 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 37 H 0.13 1.60 8.06 -52.49 -0.42 1.18 16 38 H 0.40 5.29 8.59 -40.82 -0.35 4.94 16 39 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 41 H 0.09 2.45 6.04 -51.93 -0.31 2.13 16 42 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 44 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.06 1.14 7.93 -51.93 -0.41 0.73 16 46 H 0.37 3.96 9.09 45.56 0.41 4.37 16 LS Contribution 384.55 15.07 5.80 5.80 Total: -1.00 -33.22 384.55 -9.18 -42.40 By element: Atomic # 1 Polarization: 14.48 SS G_CDS: -5.66 Total: 8.81 kcal Atomic # 6 Polarization: 3.52 SS G_CDS: -3.80 Total: -0.28 kcal Atomic # 7 Polarization: -50.54 SS G_CDS: -0.16 Total: -50.71 kcal Atomic # 8 Polarization: -21.69 SS G_CDS: -0.32 Total: -22.01 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.03 Total: 15.99 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.22 -9.18 -42.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090292713.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.993 kcal (2) G-P(sol) polarization free energy of solvation -33.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds