Wall clock time and date at job start Wed Apr 1 2020 02:43:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.37886 * 120.01091 * 2 1 4 4 C 1.38644 * 120.65160 * 180.02562 * 3 2 1 5 5 C 1.37874 * 120.20277 * 359.96279 * 4 3 2 6 6 C 1.39077 * 119.63097 * 0.03660 * 5 4 3 7 7 C 1.47659 * 134.26800 * 179.97438 * 6 5 4 8 8 C 1.47081 * 127.14205 * 0.02562 * 7 6 5 9 9 O 1.21652 * 119.99704 * 0.02562 * 8 7 6 10 10 N 1.34774 * 119.99954 * 179.97438 * 8 7 6 11 11 C 1.46496 * 120.00000 * 180.02562 * 10 8 7 12 12 H 1.09006 * 109.44724 * 34.96750 * 11 10 8 13 13 C 1.53047 * 109.46267 * 275.00858 * 11 10 8 14 14 C 1.53191 * 109.30931 * 301.34309 * 13 11 10 15 15 N 1.46924 * 108.77425 * 305.36480 * 14 13 11 16 16 C 1.36939 * 120.62981 * 233.58713 * 15 14 13 17 17 H 1.08001 * 119.99849 * 152.62954 * 16 15 14 18 18 C 1.38815 * 120.00059 * 332.63146 * 16 15 14 19 19 N 1.31619 * 119.99784 * 159.34499 * 18 16 15 20 20 Si 1.86797 * 119.99778 * 339.34317 * 18 16 15 21 21 H 1.48501 * 109.46815 * 92.94264 * 20 18 16 22 22 H 1.48504 * 109.46873 * 212.93920 * 20 18 16 23 23 H 1.48500 * 109.47293 * 332.94418 * 20 18 16 24 24 C 1.46925 * 118.74139 * 53.60852 * 15 14 13 25 25 C 1.53040 * 109.46055 * 154.93585 * 11 10 8 26 26 H 1.09004 * 109.49473 * 178.60690 * 25 11 10 27 27 O 1.42895 * 109.49825 * 298.70719 * 25 11 10 28 28 C 1.36055 * 105.71603 * 180.28913 * 7 6 5 29 29 O 1.33808 * 109.86094 * 359.56366 * 28 7 6 30 30 C 1.34907 * 111.34813 * 0.46193 * 29 28 7 31 31 H 1.09000 * 109.46643 * 269.97266 * 1 2 3 32 32 H 1.08999 * 109.47276 * 29.96980 * 1 2 3 33 33 H 1.08996 * 109.46807 * 149.97829 * 1 2 3 34 34 H 1.07997 * 119.67253 * 0.02801 * 3 2 1 35 35 H 1.08005 * 119.89419 * 179.97438 * 4 3 2 36 36 H 1.08002 * 120.18547 * 180.02562 * 5 4 3 37 37 H 0.97000 * 120.00039 * 0.02562 * 10 8 7 38 38 H 1.08996 * 109.49283 * 181.39061 * 13 11 10 39 39 H 1.08995 * 109.49382 * 61.29361 * 13 11 10 40 40 H 1.08999 * 109.58756 * 65.15192 * 14 13 11 41 41 H 1.08998 * 109.58708 * 185.43787 * 14 13 11 42 42 H 0.96995 * 119.99495 * 180.02562 * 19 18 16 43 43 H 1.09005 * 109.58555 * 66.17845 * 24 15 14 44 44 H 1.09004 * 109.58986 * 186.60184 * 24 15 14 45 45 H 0.96697 * 114.00244 * 179.83798 * 27 25 11 46 46 H 1.08006 * 125.06605 * 179.71729 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1967 1.1940 0.0000 4 6 3.5831 1.2095 -0.0005 5 6 4.2899 0.0257 -0.0003 6 6 3.6045 -1.1844 -0.0003 7 6 4.0167 -2.6023 -0.0006 8 6 5.3904 -3.1279 -0.0004 9 8 6.3349 -2.3612 0.0005 10 7 5.6027 -4.4588 -0.0002 11 6 6.9709 -4.9822 0.0006 12 1 7.6106 -4.3252 0.5899 13 6 7.4929 -5.0469 -1.4367 14 6 6.5719 -5.9434 -2.2702 15 7 6.4600 -7.2509 -1.6094 16 6 6.7294 -8.4049 -2.2957 17 1 7.0776 -9.2793 -1.7661 18 6 6.5550 -8.4506 -3.6721 19 7 7.1722 -9.3701 -4.3834 20 14 5.4442 -7.2074 -4.5146 21 1 6.2536 -6.0479 -4.9681 22 1 4.7895 -7.8427 -5.6864 23 1 4.4065 -6.7432 -3.5591 24 6 6.0531 -7.2968 -0.1984 25 6 6.9798 -6.3852 0.6120 26 1 7.9936 -6.7851 0.5902 27 8 6.5213 -6.3192 1.9638 28 6 2.8619 -3.3217 -0.0070 29 8 1.8106 -2.4940 -0.0010 30 6 2.2020 -1.2030 -0.0006 31 1 -0.3632 -0.0005 1.0277 32 1 -0.3634 0.8902 -0.5134 33 1 -0.3633 -0.8898 -0.5142 34 1 1.6516 2.1263 0.0005 35 1 4.1108 2.1518 -0.0009 36 1 5.3699 0.0381 -0.0003 37 1 4.8495 -5.0701 -0.0005 38 1 8.5018 -5.4595 -1.4390 39 1 7.5083 -4.0442 -1.8635 40 1 5.5855 -5.4857 -2.3441 41 1 6.9913 -6.0708 -3.2682 42 1 7.0506 -9.4018 -5.3452 43 1 5.0242 -6.9494 -0.1033 44 1 6.1314 -8.3192 0.1715 45 1 6.4985 -7.1749 2.4136 46 1 2.8027 -4.4002 -0.0133 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090326887.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:43:14 Heat of formation + Delta-G solvation = -28.159741 kcal Electronic energy + Delta-G solvation = -30567.390856 eV Core-core repulsion = 26424.227273 eV Total energy + Delta-G solvation = -4143.163583 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.78063 -39.93398 -38.30613 -38.02285 -35.71036 -34.24029 -33.80360 -32.20821 -31.58466 -30.54760 -29.68679 -29.04501 -27.12385 -25.51162 -24.00467 -22.77798 -22.58368 -22.54805 -21.81285 -20.02060 -19.14772 -18.11472 -17.38856 -17.16229 -16.69261 -16.51662 -16.06130 -15.86821 -15.49762 -15.19481 -14.82818 -14.53104 -14.45037 -14.06707 -13.95920 -13.75114 -13.56406 -13.46091 -12.95836 -12.68365 -12.60735 -12.54962 -12.38059 -12.11363 -11.94810 -11.85862 -11.63083 -11.29861 -11.22697 -11.17758 -10.37759 -10.16763 -10.14571 -10.05751 -9.82419 -9.78075 -9.59455 -8.90894 -8.84617 -8.68757 -8.31698 -7.13415 -6.06725 -3.45108 0.57241 1.10712 1.61168 2.42971 3.22589 3.24237 3.25357 3.39821 3.41821 3.60609 4.18710 4.23732 4.38381 4.42169 4.53930 4.62802 4.82674 4.98624 5.05038 5.11822 5.15578 5.18842 5.23185 5.25161 5.30902 5.39143 5.48043 5.53739 5.63968 5.66506 5.72091 5.94328 5.98886 6.08620 6.12932 6.17509 6.26715 6.28713 6.30621 6.37849 6.39472 6.54794 6.61756 6.76961 6.85149 7.63874 7.71629 7.85246 8.19653 8.33578 8.78496 9.58193 9.92682 11.08693 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.013996 B = 0.003211 C = 0.002946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2000.052179 B = 8718.739396 C = 9500.926614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.073 4.073 3 C -0.099 4.099 4 C -0.130 4.130 5 C -0.065 4.065 6 C -0.086 4.086 7 C -0.223 4.223 8 C 0.588 3.412 9 O -0.540 6.540 10 N -0.705 5.705 11 C 0.167 3.833 12 H 0.087 0.913 13 C -0.146 4.146 14 C 0.126 3.874 15 N -0.600 5.600 16 C -0.267 4.267 17 H 0.087 0.913 18 C 0.028 3.972 19 N -0.904 5.904 20 Si 0.883 3.117 21 H -0.288 1.288 22 H -0.302 1.302 23 H -0.272 1.272 24 C 0.121 3.879 25 C 0.075 3.925 26 H 0.073 0.927 27 O -0.569 6.569 28 C 0.066 3.934 29 O -0.181 6.181 30 C 0.045 3.955 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.135 0.865 35 H 0.131 0.869 36 H 0.138 0.862 37 H 0.398 0.602 38 H 0.079 0.921 39 H 0.069 0.931 40 H 0.026 0.974 41 H 0.076 0.924 42 H 0.264 0.736 43 H 0.025 0.975 44 H 0.070 0.930 45 H 0.376 0.624 46 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.610 16.488 11.362 22.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.073 4.073 3 C -0.117 4.117 4 C -0.148 4.148 5 C -0.083 4.083 6 C -0.088 4.088 7 C -0.227 4.227 8 C 0.375 3.625 9 O -0.418 6.418 10 N -0.356 5.356 11 C 0.063 3.937 12 H 0.105 0.895 13 C -0.186 4.186 14 C 0.000 4.000 15 N -0.325 5.325 16 C -0.395 4.395 17 H 0.104 0.896 18 C -0.172 4.172 19 N -0.546 5.546 20 Si 0.713 3.287 21 H -0.215 1.215 22 H -0.230 1.230 23 H -0.197 1.197 24 C -0.006 4.006 25 C 0.015 3.985 26 H 0.091 0.909 27 O -0.374 6.374 28 C -0.003 4.003 29 O -0.081 6.081 30 C -0.002 4.002 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.087 0.913 34 H 0.152 0.848 35 H 0.149 0.851 36 H 0.156 0.844 37 H 0.234 0.766 38 H 0.097 0.903 39 H 0.087 0.913 40 H 0.044 0.956 41 H 0.094 0.906 42 H 0.074 0.926 43 H 0.042 0.958 44 H 0.088 0.912 45 H 0.223 0.777 46 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -10.219 17.483 11.059 23.073 hybrid contribution -0.704 -0.471 -0.579 1.026 sum -10.923 17.012 10.479 22.771 Atomic orbital electron populations 1.20740 0.90300 1.03182 1.02651 1.18773 0.96178 0.88281 1.04117 1.20829 0.94218 0.96314 1.00319 1.21087 0.93911 0.98030 1.01792 1.20715 1.00973 0.89774 0.96835 1.19405 0.92263 0.92753 1.04336 1.21065 0.94133 0.92737 1.14774 1.17023 0.86800 0.82308 0.76347 1.90753 1.43247 1.57229 1.50604 1.45811 1.09537 1.05923 1.74322 1.20856 0.82749 0.93458 0.96684 0.89464 1.22422 1.01086 1.00660 0.94440 1.21347 0.96364 0.85676 0.96573 1.44283 1.79090 1.02142 1.07020 1.18875 1.39376 0.90852 0.90417 0.89556 1.25259 0.98634 0.96874 0.96397 1.69826 1.42155 1.36227 1.06366 0.86966 0.82278 0.80586 0.78827 1.21519 1.23008 1.19698 1.21563 0.94795 0.98367 0.85826 1.22709 0.98934 0.95564 0.81323 0.90896 1.86482 1.89746 1.35532 1.25609 1.24525 0.83503 0.96036 0.96192 1.83834 1.34644 1.14627 1.74948 1.19383 0.92437 0.83386 1.04982 0.90953 0.91037 0.91306 0.84761 0.85079 0.84414 0.76636 0.90263 0.91271 0.95575 0.90594 0.92578 0.95751 0.91150 0.77679 0.76706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.86 10.02 36.01 0.36 -0.50 16 2 C -0.07 -0.76 5.89 -104.49 -0.62 -1.38 16 3 C -0.10 -0.90 9.66 -39.56 -0.38 -1.29 16 4 C -0.13 -1.31 10.04 -39.56 -0.40 -1.71 16 5 C -0.06 -0.85 9.88 -39.40 -0.39 -1.24 16 6 C -0.09 -1.23 6.29 -104.98 -0.66 -1.89 16 7 C -0.22 -3.23 6.31 -103.25 -0.65 -3.88 16 8 C 0.59 9.68 7.77 -12.68 -0.10 9.58 16 9 O -0.54 -10.34 15.95 5.23 0.08 -10.26 16 10 N -0.70 -10.81 4.14 -54.95 -0.23 -11.04 16 11 C 0.17 2.72 2.47 -67.89 -0.17 2.55 16 12 H 0.09 1.49 7.57 -51.93 -0.39 1.10 16 13 C -0.15 -2.61 5.77 -26.61 -0.15 -2.77 16 14 C 0.13 2.62 3.94 -3.71 -0.01 2.61 16 15 N -0.60 -13.07 2.77 -172.32 -0.48 -13.54 16 16 C -0.27 -7.02 10.04 -15.06 -0.15 -7.17 16 17 H 0.09 2.41 8.06 -52.49 -0.42 1.99 16 18 C 0.03 0.78 5.23 -17.43 -0.09 0.69 16 19 N -0.90 -26.81 13.97 55.49 0.78 -26.04 16 20 Si 0.88 21.73 24.35 -169.99 -4.14 17.59 16 21 H -0.29 -6.96 6.62 56.52 0.37 -6.59 16 22 H -0.30 -7.61 7.11 56.52 0.40 -7.20 16 23 H -0.27 -6.46 6.63 56.52 0.37 -6.08 16 24 C 0.12 2.08 5.84 -3.71 -0.02 2.06 16 25 C 0.08 1.15 3.36 -26.61 -0.09 1.06 16 26 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 27 O -0.57 -7.57 13.21 -35.23 -0.47 -8.03 16 28 C 0.07 0.77 11.52 29.95 0.34 1.12 16 29 O -0.18 -2.24 10.53 5.33 0.06 -2.18 16 30 C 0.04 0.57 7.05 -38.56 -0.27 0.30 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.07 0.42 8.08 -51.93 -0.42 0.00 16 33 H 0.07 0.55 8.09 -51.93 -0.42 0.13 16 34 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 35 H 0.13 0.97 8.06 -52.48 -0.42 0.55 16 36 H 0.14 1.87 7.54 -52.49 -0.40 1.48 16 37 H 0.40 5.48 5.79 -40.82 -0.24 5.24 16 38 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 39 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 40 H 0.03 0.54 6.67 -51.93 -0.35 0.20 16 41 H 0.08 1.77 4.50 -51.93 -0.23 1.54 16 42 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 43 H 0.02 0.40 6.64 -51.93 -0.34 0.05 16 44 H 0.07 1.18 7.93 -51.93 -0.41 0.76 16 45 H 0.38 3.45 9.08 45.56 0.41 3.86 16 46 H 0.22 1.75 7.41 -52.48 -0.39 1.36 16 LS Contribution 370.69 15.07 5.59 5.59 Total: -1.00 -33.69 370.69 -7.58 -41.27 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: -5.32 Total: 8.49 kcal Atomic # 6 Polarization: 1.61 SS G_CDS: -3.45 Total: -1.84 kcal Atomic # 7 Polarization: -50.69 SS G_CDS: 0.07 Total: -50.62 kcal Atomic # 8 Polarization: -20.15 SS G_CDS: -0.33 Total: -20.47 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.14 Total: 17.59 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.69 -7.58 -41.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090326887.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.114 kcal (2) G-P(sol) polarization free energy of solvation -33.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds