Wall clock time and date at job start Wed Apr 1 2020 02:16:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.46244 * 126.96403 * 2 1 4 4 C 1.39706 * 134.18850 * 0.02562 * 3 2 1 5 5 C 1.36626 * 119.71112 * 180.27827 * 4 3 2 6 6 C 1.38836 * 120.44005 * 359.97438 * 5 4 3 7 7 C 1.37793 * 120.74674 * 0.02562 * 6 5 4 8 8 C 1.39022 * 119.85824 * 359.97318 * 7 6 5 9 9 O 1.34710 * 133.24690 * 180.02562 * 8 7 6 10 10 C 1.34948 * 110.86464 * 179.97438 * 9 8 7 11 11 C 1.46986 * 125.13192 * 179.97438 * 10 9 8 12 12 O 1.21657 * 119.99724 * 180.02562 * 11 10 9 13 13 N 1.34778 * 119.99875 * 0.03096 * 11 10 9 14 14 C 1.46499 * 119.99664 * 179.72481 * 13 11 10 15 15 H 1.08999 * 109.46367 * 35.26719 * 14 13 11 16 16 C 1.53040 * 109.45526 * 275.29683 * 14 13 11 17 17 C 1.53201 * 109.31001 * 178.61821 * 16 14 13 18 18 N 1.46922 * 108.77669 * 54.63265 * 17 16 14 19 19 C 1.36934 * 120.63120 * 126.37237 * 18 17 16 20 20 H 1.08005 * 120.00045 * 331.82743 * 19 18 17 21 21 C 1.38807 * 120.00273 * 151.82872 * 19 18 17 22 22 N 1.31624 * 119.99963 * 343.09380 * 21 19 18 23 23 Si 1.86801 * 120.00119 * 163.09149 * 21 19 18 24 24 H 1.48497 * 109.47299 * 59.99930 * 23 21 19 25 25 H 1.48499 * 109.47135 * 180.02562 * 23 21 19 26 26 H 1.48504 * 109.47168 * 299.99737 * 23 21 19 27 27 C 1.46931 * 118.73960 * 306.39271 * 18 17 16 28 28 C 1.53039 * 109.45796 * 155.24535 * 14 13 11 29 29 H 1.09006 * 109.49899 * 301.32923 * 28 14 13 30 30 O 1.42902 * 109.50031 * 61.43090 * 28 14 13 31 31 H 1.09006 * 109.47203 * 270.19137 * 1 2 3 32 32 H 1.09002 * 109.47139 * 30.19015 * 1 2 3 33 33 H 1.09002 * 109.47395 * 150.19026 * 1 2 3 34 34 H 1.07999 * 120.14710 * 0.29668 * 4 3 2 35 35 H 1.07996 * 119.77863 * 179.97438 * 5 4 3 36 36 H 1.07999 * 119.62491 * 180.02562 * 6 5 4 37 37 H 1.08004 * 120.07122 * 180.02562 * 7 6 5 38 38 H 0.96998 * 120.00095 * 359.97438 * 13 11 10 39 39 H 1.08995 * 109.50088 * 298.56318 * 16 14 13 40 40 H 1.08995 * 109.49979 * 58.63676 * 16 14 13 41 41 H 1.08996 * 109.58943 * 174.42562 * 17 16 14 42 42 H 1.09004 * 109.58477 * 294.84864 * 17 16 14 43 43 H 0.97004 * 119.99681 * 180.02562 * 22 21 19 44 44 H 1.09003 * 109.58735 * 173.39499 * 27 18 17 45 45 H 1.08995 * 109.58532 * 293.82084 * 27 18 17 46 46 H 0.96697 * 113.99357 * 179.97438 * 30 28 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3863 1.1685 0.0000 4 6 2.1714 2.5489 0.0004 5 6 3.2398 3.4006 -0.0055 6 6 4.5359 2.9030 -0.0114 7 6 4.7691 1.5449 -0.0119 8 6 3.6980 0.6587 -0.0059 9 8 3.6124 -0.6857 -0.0044 10 6 2.3235 -1.0852 0.0028 11 6 1.8715 -2.4838 0.0058 12 8 0.6819 -2.7386 0.0119 13 7 2.7749 -3.4840 0.0019 14 6 2.3244 -4.8780 0.0110 15 1 1.4092 -4.9677 -0.5743 16 6 2.0531 -5.3166 1.4518 17 6 1.5493 -6.7634 1.4546 18 7 2.5203 -7.6036 0.7407 19 6 3.0426 -8.7227 1.3323 20 1 3.1321 -8.7733 2.4074 21 6 3.4571 -9.7920 0.5503 22 7 3.0576 -9.8866 -0.7003 23 14 4.5818 -11.0968 1.2727 24 1 3.9138 -11.7388 2.4332 25 1 4.8763 -12.1231 0.2406 26 1 5.8500 -10.4656 1.7184 27 6 2.9207 -7.2202 -0.6200 28 6 3.4093 -5.7683 -0.5992 29 1 3.6188 -5.4406 -1.6175 30 8 4.5994 -5.6765 0.1865 31 1 -0.3634 0.0034 1.0277 32 1 -0.3633 0.8883 -0.5168 33 1 -0.3634 -0.8917 -0.5109 34 1 1.1652 2.9412 0.0057 35 1 3.0749 4.4679 -0.0055 36 1 5.3708 3.5881 -0.0156 37 1 5.7819 1.1698 -0.0161 38 1 3.7233 -3.2808 -0.0033 39 1 2.9737 -5.2509 2.0316 40 1 1.2976 -4.6670 1.8938 41 1 1.4489 -7.1134 2.4820 42 1 0.5830 -6.8148 0.9528 43 1 3.3469 -10.6341 -1.2466 44 1 3.7252 -7.8716 -0.9615 45 1 2.0662 -7.3088 -1.2909 46 1 5.3305 -6.2169 -0.1427 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090787386.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:16:29 Heat of formation + Delta-G solvation = -33.289021 kcal Electronic energy + Delta-G solvation = -30026.456843 eV Core-core repulsion = 25883.070837 eV Total energy + Delta-G solvation = -4143.386005 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.73544 -39.78121 -38.21538 -37.88161 -34.82073 -34.66041 -33.89941 -32.16925 -30.87160 -30.34890 -29.41851 -29.09803 -27.65892 -25.37716 -24.03590 -22.99012 -22.40431 -21.85976 -20.69724 -20.25414 -19.50091 -18.24154 -17.32306 -17.20575 -16.62585 -16.52160 -15.95717 -15.51344 -15.20301 -14.92560 -14.56686 -14.40568 -14.09673 -13.90715 -13.77081 -13.66352 -13.32004 -13.19463 -12.93544 -12.80820 -12.54870 -12.51333 -12.18163 -12.04448 -12.02508 -11.29655 -11.26137 -11.17439 -10.80773 -10.62338 -10.50738 -10.28922 -10.15824 -10.08873 -9.99880 -9.69586 -9.21950 -8.98248 -8.83654 -8.52789 -8.37452 -6.70057 -5.83281 -3.24354 0.33728 1.02484 1.62527 2.29789 3.11623 3.19301 3.36679 3.36825 3.42265 3.44053 4.20943 4.28055 4.46552 4.55329 4.66529 4.76814 4.84363 4.93888 5.06902 5.16074 5.27197 5.35553 5.37893 5.43291 5.53009 5.55458 5.70050 5.75321 5.87202 5.90857 5.98925 6.00166 6.08459 6.13229 6.19569 6.24215 6.25907 6.42102 6.51055 6.72754 6.77306 6.81055 6.95947 7.14222 7.40163 7.59808 7.76459 8.13366 8.23772 8.41334 9.16088 9.79023 10.35923 11.25621 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.024876 B = 0.002336 C = 0.002210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.319370 B =11981.025040 C =12668.857681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.087 4.087 3 C -0.140 4.140 4 C -0.059 4.059 5 C -0.141 4.141 6 C -0.086 4.086 7 C -0.111 4.111 8 C 0.071 3.929 9 O -0.182 6.182 10 C -0.027 4.027 11 C 0.594 3.406 12 O -0.516 6.516 13 N -0.702 5.702 14 C 0.161 3.839 15 H 0.094 0.906 16 C -0.137 4.137 17 C 0.149 3.851 18 N -0.583 5.583 19 C -0.243 4.243 20 H 0.065 0.935 21 C -0.001 4.001 22 N -0.907 5.907 23 Si 0.904 3.096 24 H -0.283 1.283 25 H -0.291 1.291 26 H -0.284 1.284 27 C 0.146 3.854 28 C 0.073 3.927 29 H 0.045 0.955 30 O -0.559 6.559 31 H 0.077 0.923 32 H 0.066 0.934 33 H 0.093 0.907 34 H 0.129 0.871 35 H 0.130 0.870 36 H 0.136 0.864 37 H 0.135 0.865 38 H 0.408 0.592 39 H 0.071 0.929 40 H 0.054 0.946 41 H 0.058 0.942 42 H 0.021 0.979 43 H 0.254 0.746 44 H 0.096 0.904 45 H 0.029 0.971 46 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.433 25.241 -1.171 25.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.090 4.090 3 C -0.141 4.141 4 C -0.078 4.078 5 C -0.160 4.160 6 C -0.104 4.104 7 C -0.129 4.129 8 C 0.022 3.978 9 O -0.083 6.083 10 C -0.077 4.077 11 C 0.379 3.621 12 O -0.395 6.395 13 N -0.351 5.351 14 C 0.058 3.942 15 H 0.112 0.888 16 C -0.178 4.178 17 C 0.022 3.978 18 N -0.305 5.305 19 C -0.373 4.373 20 H 0.083 0.917 21 C -0.199 4.199 22 N -0.552 5.552 23 Si 0.734 3.266 24 H -0.209 1.209 25 H -0.217 1.217 26 H -0.210 1.210 27 C 0.019 3.981 28 C 0.011 3.989 29 H 0.062 0.938 30 O -0.365 6.365 31 H 0.095 0.905 32 H 0.085 0.915 33 H 0.112 0.888 34 H 0.147 0.853 35 H 0.148 0.852 36 H 0.154 0.846 37 H 0.153 0.847 38 H 0.243 0.757 39 H 0.089 0.911 40 H 0.073 0.927 41 H 0.077 0.923 42 H 0.039 0.961 43 H 0.064 0.936 44 H 0.114 0.886 45 H 0.047 0.953 46 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 0.467 25.069 -0.934 25.091 hybrid contribution 1.457 -0.882 -0.059 1.704 sum 1.924 24.187 -0.993 24.283 Atomic orbital electron populations 1.20437 0.87401 1.03872 1.03146 1.21390 0.97066 0.89423 1.01083 1.19838 0.92419 0.94348 1.07539 1.20353 0.99796 0.90250 0.97359 1.20787 0.92250 1.00026 1.02892 1.20996 0.97522 0.93719 0.98180 1.20018 0.96861 0.91183 1.04837 1.19746 0.95548 0.81208 1.01276 1.84043 1.27211 1.20811 1.76281 1.21967 0.80918 0.95085 1.09737 1.16689 0.86113 0.81631 0.77708 1.90845 1.15244 1.82288 1.51099 1.46185 1.10073 1.06438 1.72447 1.21142 0.97072 0.77337 0.98651 0.88761 1.22329 1.01486 0.98772 0.95168 1.20895 0.91613 0.88534 0.96792 1.43872 1.46639 1.26357 1.13619 1.19134 1.34715 0.91867 0.91599 0.91713 1.25032 1.01122 0.97017 0.96694 1.70007 1.45670 1.31676 1.07888 0.86347 0.81111 0.81113 0.78070 1.20894 1.21730 1.21047 1.21446 0.99929 0.89499 0.87259 1.22848 0.85412 0.98780 0.91833 0.93761 1.86351 1.22916 1.70727 1.56491 0.90483 0.91462 0.88838 0.85299 0.85173 0.84607 0.84692 0.75685 0.91073 0.92743 0.92333 0.96125 0.93571 0.88562 0.95327 0.77714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.01 9.81 36.00 0.35 -0.66 16 2 C -0.09 -1.12 6.39 -102.28 -0.65 -1.77 16 3 C -0.14 -1.65 6.37 -105.19 -0.67 -2.32 16 4 C -0.06 -0.53 10.06 -39.62 -0.40 -0.93 16 5 C -0.14 -1.02 9.98 -39.94 -0.40 -1.42 16 6 C -0.09 -0.62 10.01 -39.52 -0.40 -1.01 16 7 C -0.11 -1.02 10.07 -39.45 -0.40 -1.41 16 8 C 0.07 0.86 7.41 -38.35 -0.28 0.57 16 9 O -0.18 -2.50 10.28 2.79 0.03 -2.47 16 10 C -0.03 -0.39 7.07 -36.91 -0.26 -0.65 16 11 C 0.59 9.47 7.76 -12.72 -0.10 9.38 16 12 O -0.52 -9.21 14.28 5.23 0.07 -9.14 16 13 N -0.70 -11.03 5.05 -54.98 -0.28 -11.31 16 14 C 0.16 2.86 2.20 -67.89 -0.15 2.71 16 15 H 0.09 1.76 7.58 -51.93 -0.39 1.37 16 16 C -0.14 -2.59 5.51 -26.61 -0.15 -2.74 16 17 C 0.15 3.18 6.52 -3.71 -0.02 3.16 16 18 N -0.58 -14.23 2.93 -172.31 -0.51 -14.73 16 19 C -0.24 -6.54 9.58 -15.06 -0.14 -6.68 16 20 H 0.07 1.74 7.89 -52.48 -0.41 1.32 16 21 C 0.00 -0.02 4.92 -17.43 -0.09 -0.11 16 22 N -0.91 -25.50 11.20 55.49 0.62 -24.88 16 23 Si 0.90 21.30 29.59 -169.99 -5.03 16.27 16 24 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 25 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 26 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 27 C 0.15 3.28 4.95 -3.71 -0.02 3.26 16 28 C 0.07 1.31 3.38 -26.61 -0.09 1.23 16 29 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 30 O -0.56 -9.95 12.09 -35.23 -0.43 -10.37 16 31 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.09 1.17 6.38 -51.93 -0.33 0.84 16 34 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 35 H 0.13 0.58 8.06 -52.49 -0.42 0.16 16 36 H 0.14 0.57 8.06 -52.49 -0.42 0.15 16 37 H 0.14 0.99 8.06 -52.48 -0.42 0.56 16 38 H 0.41 5.99 7.97 -40.82 -0.33 5.67 16 39 H 0.07 1.43 7.61 -51.93 -0.40 1.03 16 40 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.06 1.24 7.93 -51.93 -0.41 0.82 16 42 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 44 H 0.10 2.37 6.06 -51.93 -0.31 2.06 16 45 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.38 5.79 9.08 45.56 0.41 6.21 16 LS Contribution 378.58 15.07 5.71 5.71 Total: -1.00 -31.18 378.58 -9.21 -40.39 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: -5.53 Total: 9.94 kcal Atomic # 6 Polarization: 4.47 SS G_CDS: -3.86 Total: 0.61 kcal Atomic # 7 Polarization: -50.76 SS G_CDS: -0.16 Total: -50.92 kcal Atomic # 8 Polarization: -21.66 SS G_CDS: -0.32 Total: -21.98 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.03 Total: 16.27 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -31.18 -9.21 -40.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090787386.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.098 kcal (2) G-P(sol) polarization free energy of solvation -31.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds