Wall clock time and date at job start Wed Apr 1 2020 02:16:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.46244 * 126.96403 * 2 1 4 4 C 1.39706 * 134.18850 * 0.02562 * 3 2 1 5 5 C 1.36626 * 119.71112 * 180.27827 * 4 3 2 6 6 C 1.38836 * 120.44005 * 359.97438 * 5 4 3 7 7 C 1.37793 * 120.74674 * 0.02562 * 6 5 4 8 8 C 1.39022 * 119.85824 * 359.97318 * 7 6 5 9 9 O 1.34710 * 133.24690 * 180.02562 * 8 7 6 10 10 C 1.34948 * 110.86464 * 179.97438 * 9 8 7 11 11 C 1.46986 * 125.13192 * 179.97438 * 10 9 8 12 12 O 1.21657 * 119.99724 * 180.02562 * 11 10 9 13 13 N 1.34778 * 119.99875 * 0.03096 * 11 10 9 14 14 C 1.46499 * 119.99664 * 179.72481 * 13 11 10 15 15 H 1.08999 * 109.46367 * 35.26719 * 14 13 11 16 16 C 1.53040 * 109.45526 * 275.29683 * 14 13 11 17 17 C 1.53201 * 109.31001 * 178.61821 * 16 14 13 18 18 N 1.46922 * 108.77669 * 54.63265 * 17 16 14 19 19 C 1.36934 * 120.63120 * 126.37237 * 18 17 16 20 20 H 1.08005 * 120.00045 * 331.82743 * 19 18 17 21 21 C 1.38807 * 120.00273 * 151.82872 * 19 18 17 22 22 N 1.31624 * 119.99963 * 343.09380 * 21 19 18 23 23 Si 1.86801 * 120.00119 * 163.09149 * 21 19 18 24 24 H 1.48497 * 109.47299 * 59.99930 * 23 21 19 25 25 H 1.48499 * 109.47135 * 180.02562 * 23 21 19 26 26 H 1.48504 * 109.47168 * 299.99737 * 23 21 19 27 27 C 1.46931 * 118.73960 * 306.39271 * 18 17 16 28 28 C 1.53039 * 109.45796 * 155.24535 * 14 13 11 29 29 H 1.09006 * 109.49899 * 301.32923 * 28 14 13 30 30 O 1.42902 * 109.50031 * 61.43090 * 28 14 13 31 31 H 1.09006 * 109.47203 * 270.19137 * 1 2 3 32 32 H 1.09002 * 109.47139 * 30.19015 * 1 2 3 33 33 H 1.09002 * 109.47395 * 150.19026 * 1 2 3 34 34 H 1.07999 * 120.14710 * 0.29668 * 4 3 2 35 35 H 1.07996 * 119.77863 * 179.97438 * 5 4 3 36 36 H 1.07999 * 119.62491 * 180.02562 * 6 5 4 37 37 H 1.08004 * 120.07122 * 180.02562 * 7 6 5 38 38 H 0.96998 * 120.00095 * 359.97438 * 13 11 10 39 39 H 1.08995 * 109.50088 * 298.56318 * 16 14 13 40 40 H 1.08995 * 109.49979 * 58.63676 * 16 14 13 41 41 H 1.08996 * 109.58943 * 174.42562 * 17 16 14 42 42 H 1.09004 * 109.58477 * 294.84864 * 17 16 14 43 43 H 0.97004 * 119.99681 * 180.02562 * 22 21 19 44 44 H 1.09003 * 109.58735 * 173.39499 * 27 18 17 45 45 H 1.08995 * 109.58532 * 293.82084 * 27 18 17 46 46 H 0.96697 * 113.99357 * 179.97438 * 30 28 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3863 1.1685 0.0000 4 6 2.1714 2.5489 0.0004 5 6 3.2398 3.4006 -0.0055 6 6 4.5359 2.9030 -0.0114 7 6 4.7691 1.5449 -0.0119 8 6 3.6980 0.6587 -0.0059 9 8 3.6124 -0.6857 -0.0044 10 6 2.3235 -1.0852 0.0028 11 6 1.8715 -2.4838 0.0058 12 8 0.6819 -2.7386 0.0119 13 7 2.7749 -3.4840 0.0019 14 6 2.3244 -4.8780 0.0110 15 1 1.4092 -4.9677 -0.5743 16 6 2.0531 -5.3166 1.4518 17 6 1.5493 -6.7634 1.4546 18 7 2.5203 -7.6036 0.7407 19 6 3.0426 -8.7227 1.3323 20 1 3.1321 -8.7733 2.4074 21 6 3.4571 -9.7920 0.5503 22 7 3.0576 -9.8866 -0.7003 23 14 4.5818 -11.0968 1.2727 24 1 3.9138 -11.7388 2.4332 25 1 4.8763 -12.1231 0.2406 26 1 5.8500 -10.4656 1.7184 27 6 2.9207 -7.2202 -0.6200 28 6 3.4093 -5.7683 -0.5992 29 1 3.6188 -5.4406 -1.6175 30 8 4.5994 -5.6765 0.1865 31 1 -0.3634 0.0034 1.0277 32 1 -0.3633 0.8883 -0.5168 33 1 -0.3634 -0.8917 -0.5109 34 1 1.1652 2.9412 0.0057 35 1 3.0749 4.4679 -0.0055 36 1 5.3708 3.5881 -0.0156 37 1 5.7819 1.1698 -0.0161 38 1 3.7233 -3.2808 -0.0033 39 1 2.9737 -5.2509 2.0316 40 1 1.2976 -4.6670 1.8938 41 1 1.4489 -7.1134 2.4820 42 1 0.5830 -6.8148 0.9528 43 1 3.3469 -10.6341 -1.2466 44 1 3.7252 -7.8716 -0.9615 45 1 2.0662 -7.3088 -1.2909 46 1 5.3305 -6.2169 -0.1427 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090787386.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:16:28 Heat of formation + Delta-G solvation = -54.158095 kcal Electronic energy + Delta-G solvation = -30027.361794 eV Core-core repulsion = 25883.070837 eV Total energy + Delta-G solvation = -4144.290956 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.60618 -41.11057 -39.52229 -38.79383 -36.53200 -35.97550 -34.89411 -33.96231 -31.69251 -31.45230 -30.86901 -30.57607 -28.69410 -27.03696 -25.19199 -24.04336 -23.74077 -23.40115 -21.79557 -21.32817 -20.93671 -19.48645 -18.93946 -18.10037 -17.69670 -17.56686 -17.18661 -16.96418 -16.80799 -16.13181 -15.86302 -15.62731 -15.43025 -15.25671 -15.07538 -14.84855 -14.54968 -14.45794 -14.11908 -13.84995 -13.77840 -13.67474 -13.27192 -13.24743 -13.14915 -12.81601 -12.75651 -12.63749 -12.40948 -12.28359 -12.05960 -11.92461 -11.86836 -11.52322 -11.23597 -10.97047 -10.78742 -10.58502 -10.20498 -9.68723 -9.22719 -8.68350 -7.88220 -5.32456 -0.51420 0.33114 0.75400 1.36964 1.48900 1.50096 1.57424 1.95362 2.01464 2.51525 2.70343 3.21843 3.30336 3.37270 3.51645 3.62808 3.74468 3.81685 3.92474 3.97178 4.11618 4.29136 4.31138 4.35193 4.40518 4.50136 4.57846 4.62724 4.65726 4.71721 4.82032 4.89390 4.93148 4.99301 5.04924 5.15160 5.16606 5.28834 5.35192 5.40325 5.41127 5.47261 5.53478 5.57803 5.64672 5.99777 6.35891 6.38217 6.86444 6.92466 7.14080 7.81798 8.34978 9.18258 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.024876 B = 0.002336 C = 0.002210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.319370 B =11981.025040 C =12668.857681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.079 4.079 3 C -0.164 4.164 4 C -0.064 4.064 5 C -0.135 4.135 6 C -0.071 4.071 7 C -0.127 4.127 8 C 0.046 3.954 9 O -0.196 6.196 10 C -0.062 4.062 11 C 0.596 3.404 12 O -0.542 6.542 13 N -0.697 5.697 14 C 0.168 3.832 15 H 0.085 0.915 16 C -0.121 4.121 17 C 0.146 3.854 18 N -0.598 5.598 19 C -0.255 4.255 20 H 0.061 0.939 21 C -0.047 4.047 22 N -0.935 5.935 23 Si 0.967 3.033 24 H -0.280 1.280 25 H -0.294 1.294 26 H -0.277 1.277 27 C 0.151 3.849 28 C 0.089 3.911 29 H 0.068 0.932 30 O -0.562 6.562 31 H 0.083 0.917 32 H 0.094 0.906 33 H 0.074 0.926 34 H 0.151 0.849 35 H 0.166 0.834 36 H 0.173 0.827 37 H 0.149 0.851 38 H 0.414 0.586 39 H 0.062 0.938 40 H 0.061 0.939 41 H 0.057 0.943 42 H 0.017 0.983 43 H 0.251 0.749 44 H 0.074 0.926 45 H 0.008 0.992 46 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.577 28.648 -0.836 28.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.082 4.082 3 C -0.165 4.165 4 C -0.082 4.082 5 C -0.153 4.153 6 C -0.089 4.089 7 C -0.145 4.145 8 C -0.002 4.002 9 O -0.099 6.099 10 C -0.111 4.111 11 C 0.383 3.617 12 O -0.422 6.422 13 N -0.346 5.346 14 C 0.064 3.936 15 H 0.103 0.897 16 C -0.161 4.161 17 C 0.020 3.980 18 N -0.321 5.321 19 C -0.385 4.385 20 H 0.079 0.921 21 C -0.242 4.242 22 N -0.581 5.581 23 Si 0.796 3.204 24 H -0.207 1.207 25 H -0.220 1.220 26 H -0.203 1.203 27 C 0.025 3.975 28 C 0.028 3.972 29 H 0.086 0.914 30 O -0.369 6.369 31 H 0.102 0.898 32 H 0.112 0.888 33 H 0.093 0.907 34 H 0.168 0.832 35 H 0.184 0.816 36 H 0.190 0.810 37 H 0.167 0.833 38 H 0.250 0.750 39 H 0.081 0.919 40 H 0.080 0.920 41 H 0.076 0.924 42 H 0.035 0.965 43 H 0.060 0.940 44 H 0.092 0.908 45 H 0.026 0.974 46 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 1.628 28.508 -0.590 28.561 hybrid contribution 1.098 -1.730 -0.153 2.055 sum 2.725 26.778 -0.744 26.927 Atomic orbital electron populations 1.20476 0.86412 1.04225 1.03609 1.21772 0.97873 0.89789 0.98747 1.20048 0.91858 0.95325 1.09279 1.20727 1.01690 0.89080 0.96729 1.21276 0.91646 1.01626 1.00744 1.21525 0.98924 0.93223 0.95186 1.20412 0.96917 0.91810 1.05360 1.20317 0.96936 0.80742 1.02210 1.83973 1.26733 1.22043 1.77114 1.21594 0.81849 0.94376 1.13285 1.16852 0.85696 0.82339 0.76815 1.90820 1.16150 1.82988 1.52264 1.45961 1.10401 1.05473 1.72751 1.20869 0.96596 0.78559 0.97580 0.89740 1.22102 1.00995 0.97050 0.95951 1.20968 0.91047 0.89675 0.96337 1.44094 1.47436 1.26368 1.14228 1.19374 1.34684 0.92783 0.91685 0.92108 1.25711 1.02447 0.98933 0.97094 1.70152 1.46758 1.32224 1.08963 0.85350 0.79407 0.78571 0.77121 1.20652 1.22038 1.20296 1.21315 0.98375 0.91833 0.86015 1.22541 0.85564 0.95868 0.93223 0.91409 1.86331 1.22992 1.70886 1.56731 0.89841 0.88768 0.90728 0.83167 0.81649 0.80995 0.83348 0.74981 0.91948 0.92024 0.92425 0.96545 0.93974 0.90815 0.97369 0.76422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.95 9.81 71.23 0.70 -1.25 16 2 C -0.08 -2.02 6.39 -18.35 -0.12 -2.13 16 3 C -0.16 -3.64 6.37 -20.23 -0.13 -3.77 16 4 C -0.06 -0.94 10.06 22.25 0.22 -0.72 16 5 C -0.14 -1.35 9.98 22.04 0.22 -1.13 16 6 C -0.07 -0.73 10.01 22.31 0.22 -0.51 16 7 C -0.13 -2.06 10.07 22.35 0.23 -1.83 16 8 C 0.05 1.08 7.41 23.07 0.17 1.25 16 9 O -0.20 -5.46 10.28 -12.95 -0.13 -5.59 16 10 C -0.06 -1.82 7.07 24.00 0.17 -1.65 16 11 C 0.60 19.49 7.76 86.54 0.67 20.16 16 12 O -0.54 -19.90 14.28 -4.21 -0.06 -19.96 16 13 N -0.70 -22.10 5.05 -446.09 -2.25 -24.35 16 14 C 0.17 6.03 2.20 45.02 0.10 6.13 16 15 H 0.08 3.23 7.58 -2.39 -0.02 3.22 16 16 C -0.12 -4.61 5.51 30.67 0.17 -4.45 16 17 C 0.15 6.39 6.52 86.37 0.56 6.96 16 18 N -0.60 -29.89 2.93 -699.08 -2.05 -31.94 16 19 C -0.26 -13.91 9.58 84.03 0.81 -13.10 16 20 H 0.06 3.30 7.89 -2.91 -0.02 3.28 16 21 C -0.05 -2.54 4.92 84.86 0.42 -2.13 16 22 N -0.93 -53.68 11.20 21.65 0.24 -53.44 16 23 Si 0.97 44.20 29.59 68.60 2.03 46.23 16 24 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 25 H -0.29 -13.48 7.11 99.48 0.71 -12.78 16 26 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 27 C 0.15 6.99 4.95 86.36 0.43 7.42 16 28 C 0.09 3.24 3.38 30.67 0.10 3.35 16 29 H 0.07 2.19 8.14 -2.38 -0.02 2.17 16 30 O -0.56 -19.74 12.09 -148.98 -1.80 -21.54 16 31 H 0.08 1.67 8.14 -2.38 -0.02 1.65 16 32 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.07 1.91 6.38 -2.39 -0.02 1.89 16 34 H 0.15 1.47 8.06 -2.91 -0.02 1.44 16 35 H 0.17 0.52 8.06 -2.91 -0.02 0.50 16 36 H 0.17 0.52 8.06 -2.91 -0.02 0.50 16 37 H 0.15 1.88 8.06 -2.91 -0.02 1.85 16 38 H 0.41 12.18 7.97 -92.71 -0.74 11.44 16 39 H 0.06 2.50 7.61 -2.39 -0.02 2.48 16 40 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 41 H 0.06 2.48 7.93 -2.39 -0.02 2.46 16 42 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 43 H 0.25 14.02 8.31 -92.70 -0.77 13.25 16 44 H 0.07 3.74 6.06 -2.39 -0.01 3.72 16 45 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 46 H 0.39 11.70 9.08 -74.06 -0.67 11.02 16 Total: -1.00 -69.12 378.58 0.54 -68.58 By element: Atomic # 1 Polarization: 29.79 SS G_CDS: -0.38 Total: 29.41 kcal Atomic # 6 Polarization: 7.66 SS G_CDS: 4.94 Total: 12.60 kcal Atomic # 7 Polarization: -105.67 SS G_CDS: -4.06 Total: -109.73 kcal Atomic # 8 Polarization: -45.10 SS G_CDS: -1.99 Total: -47.09 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.23 kcal Total: -69.12 0.54 -68.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090787386.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.422 kcal (2) G-P(sol) polarization free energy of solvation -69.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds