Wall clock time and date at job start Wed Apr 1 2020 02:25:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38832 * 119.77983 * 2 1 4 4 C 1.37798 * 120.74293 * 180.02562 * 3 2 1 5 5 C 1.39034 * 119.85670 * 0.03777 * 4 3 2 6 6 O 1.34708 * 133.24455 * 180.02562 * 5 4 3 7 7 C 1.34955 * 110.86295 * 179.97438 * 6 5 4 8 8 C 1.46978 * 125.13274 * 179.97438 * 7 6 5 9 9 O 1.21648 * 120.00102 * 180.02562 * 8 7 6 10 10 N 1.34774 * 119.99807 * 0.02562 * 8 7 6 11 11 C 1.46503 * 119.99670 * 180.02562 * 10 8 7 12 12 H 1.08998 * 109.46128 * 35.00557 * 11 10 8 13 13 C 1.53038 * 109.45914 * 275.02701 * 11 10 8 14 14 C 1.53198 * 109.31310 * 178.61437 * 13 11 10 15 15 N 1.46931 * 108.77201 * 54.63980 * 14 13 11 16 16 C 1.36928 * 120.63264 * 126.37050 * 15 14 13 17 17 H 1.08006 * 119.99969 * 332.80186 * 16 15 14 18 18 C 1.38816 * 120.00217 * 152.79659 * 16 15 14 19 19 N 1.31622 * 120.00208 * 159.76337 * 18 16 15 20 20 Si 1.86797 * 119.99901 * 339.76499 * 18 16 15 21 21 H 1.48499 * 109.46997 * 94.89759 * 20 18 16 22 22 H 1.48500 * 109.47172 * 214.89657 * 20 18 16 23 23 H 1.48495 * 109.47260 * 334.89948 * 20 18 16 24 24 C 1.46930 * 118.73807 * 306.39078 * 15 14 13 25 25 C 1.53040 * 109.45778 * 154.97603 * 11 10 8 26 26 H 1.08995 * 109.50029 * 301.33952 * 25 11 10 27 27 O 1.42903 * 109.49803 * 61.43413 * 25 11 10 28 28 C 1.35809 * 109.73490 * 359.97438 * 7 6 5 29 29 C 1.40732 * 119.15379 * 0.02562 * 5 4 3 30 30 C 1.36625 * 119.77517 * 180.02562 * 2 1 3 31 31 H 1.08993 * 109.47120 * 269.94375 * 1 2 3 32 32 H 1.09011 * 109.46663 * 29.93945 * 1 2 3 33 33 H 1.09000 * 109.47320 * 149.93810 * 1 2 3 34 34 H 1.08001 * 119.63184 * 0.03840 * 3 2 1 35 35 H 1.07997 * 120.07161 * 180.31445 * 4 3 2 36 36 H 0.96998 * 120.00458 * 0.02562 * 10 8 7 37 37 H 1.09002 * 109.50028 * 298.56833 * 13 11 10 38 38 H 1.08997 * 109.49948 * 58.63671 * 13 11 10 39 39 H 1.08996 * 109.58641 * 174.42206 * 14 13 11 40 40 H 1.08999 * 109.58382 * 294.85498 * 14 13 11 41 41 H 0.96997 * 120.00304 * 180.02562 * 19 18 16 42 42 H 1.08999 * 109.58815 * 173.39793 * 24 15 14 43 43 H 1.09005 * 109.58719 * 293.82147 * 24 15 14 44 44 H 0.96707 * 113.99822 * 179.97438 * 27 25 11 45 45 H 1.07995 * 126.95779 * 180.02562 * 28 7 6 46 46 H 1.08003 * 120.14296 * 359.97438 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1966 1.2050 0.0000 4 6 3.5743 1.2281 -0.0005 5 6 4.2867 0.0341 -0.0019 6 8 5.6022 -0.2557 -0.0022 7 6 5.8002 -1.5906 -0.0031 8 6 7.1134 -2.2509 -0.0043 9 8 7.1835 -3.4654 -0.0055 10 7 8.2397 -1.5108 -0.0039 11 6 9.5486 -2.1690 -0.0056 12 1 9.4945 -3.0834 -0.5964 13 6 9.9481 -2.5130 1.4311 14 6 11.3009 -3.2319 1.4225 15 7 12.2760 -2.3960 0.7087 16 6 13.4646 -2.0544 1.2964 17 1 13.5379 -1.9957 2.3723 18 6 14.5755 -1.7835 0.5092 19 7 15.5776 -1.0870 1.0024 20 14 14.6483 -2.4075 -1.2499 21 1 14.1743 -1.3445 -2.1722 22 1 16.0480 -2.7693 -1.5893 23 1 13.7804 -3.6047 -1.3868 24 6 11.9511 -1.9333 -0.6475 25 6 10.5911 -1.2290 -0.6153 26 1 10.2940 -0.9655 -1.6303 27 8 10.6862 -0.0438 0.1773 28 6 4.6030 -2.2318 -0.0029 29 6 3.5824 -1.1843 -0.0032 30 6 2.1855 -1.1859 -0.0005 31 1 -0.3633 -0.0010 1.0276 32 1 -0.3633 0.8906 -0.5130 33 1 -0.3634 -0.8894 -0.5148 34 1 1.6470 2.1347 0.0006 35 1 4.0997 2.1717 0.0046 36 1 8.1838 -0.5425 -0.0025 37 1 10.0267 -1.5967 2.0162 38 1 9.1931 -3.1631 1.8730 39 1 11.6367 -3.3908 2.4472 40 1 11.2015 -4.1915 0.9152 41 1 16.3537 -0.8975 0.4523 42 1 12.7160 -1.2356 -0.9885 43 1 11.9048 -2.7871 -1.3236 44 1 11.3302 0.5985 -0.1512 45 1 4.4381 -3.2991 -0.0030 46 1 1.6441 -2.1204 -0.0005 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090832125.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:25:57 Heat of formation + Delta-G solvation = -27.527167 kcal Electronic energy + Delta-G solvation = -29649.918901 eV Core-core repulsion = 25506.782749 eV Total energy + Delta-G solvation = -4143.136153 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.77255 -39.95259 -38.64074 -38.16015 -35.04141 -34.63836 -33.12553 -32.63546 -32.14779 -30.49603 -29.81302 -29.29830 -27.30105 -25.52398 -24.01188 -23.00999 -22.21144 -21.90819 -21.54679 -20.56764 -19.76128 -18.34184 -17.77049 -17.30727 -16.63731 -16.52208 -15.70750 -15.63441 -15.49798 -15.15997 -14.72733 -14.48732 -14.35207 -14.23963 -14.05893 -14.03251 -13.51504 -13.38667 -13.30416 -12.76914 -12.61550 -12.46370 -12.42953 -12.20896 -12.04560 -11.77315 -11.53293 -11.32343 -11.04376 -10.79753 -10.53437 -10.48866 -10.37430 -10.32487 -10.04805 -9.53712 -9.43359 -9.01100 -8.80622 -8.66930 -8.55641 -7.01200 -5.97810 -3.33039 0.27481 0.94655 1.57731 2.20408 3.01088 3.05839 3.23021 3.28011 3.44336 3.45606 4.11137 4.28057 4.40120 4.46266 4.56415 4.64741 4.74621 4.84521 4.89720 4.99693 5.05756 5.10313 5.18401 5.26041 5.27069 5.31144 5.48420 5.52404 5.59390 5.66867 5.76286 5.80935 5.91880 5.98666 6.00049 6.12397 6.17212 6.22301 6.24081 6.35376 6.40714 6.56324 6.63531 6.72346 6.93308 7.45220 7.88593 7.99490 8.09541 8.30121 8.89217 9.67392 10.04216 11.18143 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.029540 B = 0.002179 C = 0.002120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.646089 B =12849.753136 C =13205.688744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.107 4.107 3 C -0.085 4.085 4 C -0.105 4.105 5 C 0.064 3.936 6 O -0.182 6.182 7 C -0.017 4.017 8 C 0.594 3.406 9 O -0.518 6.518 10 N -0.702 5.702 11 C 0.160 3.840 12 H 0.096 0.904 13 C -0.140 4.140 14 C 0.152 3.848 15 N -0.595 5.595 16 C -0.251 4.251 17 H 0.087 0.913 18 C 0.020 3.980 19 N -0.908 5.908 20 Si 0.879 3.121 21 H -0.292 1.292 22 H -0.302 1.302 23 H -0.269 1.269 24 C 0.099 3.901 25 C 0.081 3.919 26 H 0.050 0.950 27 O -0.553 6.553 28 C -0.120 4.120 29 C -0.139 4.139 30 C -0.063 4.063 31 H 0.071 0.929 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.136 0.864 35 H 0.136 0.864 36 H 0.410 0.590 37 H 0.076 0.924 38 H 0.059 0.941 39 H 0.068 0.932 40 H 0.026 0.974 41 H 0.262 0.738 42 H 0.080 0.920 43 H 0.036 0.964 44 H 0.380 0.620 45 H 0.170 0.830 46 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.707 4.075 -4.316 29.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.107 4.107 3 C -0.103 4.103 4 C -0.124 4.124 5 C 0.016 3.984 6 O -0.084 6.084 7 C -0.067 4.067 8 C 0.379 3.621 9 O -0.395 6.395 10 N -0.351 5.351 11 C 0.057 3.943 12 H 0.114 0.886 13 C -0.180 4.180 14 C 0.025 3.975 15 N -0.318 5.318 16 C -0.379 4.379 17 H 0.104 0.896 18 C -0.178 4.178 19 N -0.551 5.551 20 Si 0.710 3.290 21 H -0.220 1.220 22 H -0.230 1.230 23 H -0.194 1.194 24 C -0.028 4.028 25 C 0.020 3.980 26 H 0.068 0.932 27 O -0.358 6.358 28 C -0.140 4.140 29 C -0.140 4.140 30 C -0.081 4.081 31 H 0.090 0.910 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.154 0.846 35 H 0.154 0.846 36 H 0.246 0.754 37 H 0.095 0.905 38 H 0.078 0.922 39 H 0.087 0.913 40 H 0.044 0.956 41 H 0.072 0.928 42 H 0.098 0.902 43 H 0.054 0.946 44 H 0.227 0.773 45 H 0.188 0.812 46 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -28.660 3.149 -3.964 29.104 hybrid contribution 0.588 0.427 -1.411 1.587 sum -28.072 3.576 -5.375 28.804 Atomic orbital electron populations 1.20763 0.90470 1.02988 1.02528 1.19542 0.96550 0.92634 1.02011 1.20888 0.92424 0.98136 0.98834 1.20000 0.93104 0.94842 1.04423 1.19756 0.80956 0.95736 1.01940 1.84043 1.24569 1.23710 1.76082 1.22149 0.96089 0.80393 1.08032 1.16711 0.81461 0.86331 0.77636 1.90888 1.85719 1.12034 1.50901 1.46125 1.05462 1.11013 1.72513 1.21114 0.79190 0.95164 0.98877 0.88598 1.22341 0.98654 1.01857 0.95143 1.20920 0.87504 0.91789 0.97259 1.44209 1.17596 1.56655 1.13387 1.18921 0.84909 1.41007 0.93102 0.89590 1.25279 0.95653 0.99278 0.97616 1.69833 1.08872 1.39197 1.37183 0.87011 0.76213 0.79790 0.86023 1.21977 1.23031 1.19420 1.22063 0.94401 0.97475 0.88894 1.22569 0.96402 0.86606 0.92454 0.93241 1.86390 1.64314 1.29421 1.55723 1.22720 0.89173 1.00134 1.02004 1.19909 0.94572 0.92465 1.07009 1.20214 0.91022 0.98389 0.98445 0.91048 0.91348 0.91409 0.84574 0.84590 0.75448 0.90529 0.92240 0.91310 0.95604 0.92795 0.90199 0.94644 0.77283 0.81220 0.85203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.50 10.00 36.01 0.36 -0.14 16 2 C -0.11 -0.78 5.85 -104.98 -0.61 -1.39 16 3 C -0.08 -0.60 9.66 -39.52 -0.38 -0.98 16 4 C -0.11 -0.93 10.07 -39.45 -0.40 -1.32 16 5 C 0.06 0.74 7.41 -38.34 -0.28 0.45 16 6 O -0.18 -2.34 10.28 2.77 0.03 -2.31 16 7 C -0.02 -0.22 7.07 -36.91 -0.26 -0.48 16 8 C 0.59 8.93 7.76 -12.72 -0.10 8.83 16 9 O -0.52 -9.02 16.49 5.23 0.09 -8.93 16 10 N -0.70 -10.25 5.05 -54.98 -0.28 -10.53 16 11 C 0.16 2.64 2.20 -67.89 -0.15 2.49 16 12 H 0.10 1.63 7.58 -51.93 -0.39 1.24 16 13 C -0.14 -2.48 5.51 -26.61 -0.15 -2.63 16 14 C 0.15 3.03 6.52 -3.71 -0.02 3.01 16 15 N -0.60 -13.74 2.71 -172.31 -0.47 -14.21 16 16 C -0.25 -6.85 10.04 -15.06 -0.15 -7.00 16 17 H 0.09 2.54 8.06 -52.48 -0.42 2.12 16 18 C 0.02 0.57 5.24 -17.43 -0.09 0.48 16 19 N -0.91 -27.26 13.97 55.49 0.78 -26.49 16 20 Si 0.88 21.64 24.35 -169.99 -4.14 17.50 16 21 H -0.29 -6.82 6.70 56.52 0.38 -6.45 16 22 H -0.30 -7.67 7.11 56.52 0.40 -7.27 16 23 H -0.27 -6.53 6.45 56.52 0.36 -6.16 16 24 C 0.10 2.03 3.83 -3.71 -0.01 2.02 16 25 C 0.08 1.37 3.38 -26.61 -0.09 1.28 16 26 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 27 O -0.55 -9.38 12.08 -35.23 -0.43 -9.81 16 28 C -0.12 -1.42 10.81 -37.23 -0.40 -1.82 16 29 C -0.14 -1.53 6.38 -105.19 -0.67 -2.20 16 30 C -0.06 -0.54 9.68 -39.62 -0.38 -0.92 16 31 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.07 0.24 8.08 -51.92 -0.42 -0.18 16 33 H 0.07 0.26 8.08 -51.93 -0.42 -0.16 16 34 H 0.14 0.59 8.06 -52.49 -0.42 0.16 16 35 H 0.14 0.94 8.06 -52.49 -0.42 0.51 16 36 H 0.41 5.55 7.97 -40.82 -0.33 5.22 16 37 H 0.08 1.46 7.61 -51.93 -0.40 1.07 16 38 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.07 1.37 7.93 -51.93 -0.41 0.96 16 40 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 42 H 0.08 1.76 4.49 -51.93 -0.23 1.53 16 43 H 0.04 0.73 6.98 -51.93 -0.36 0.36 16 44 H 0.38 5.61 9.08 45.56 0.41 6.02 16 45 H 0.17 1.75 8.06 -52.49 -0.42 1.33 16 46 H 0.13 0.85 8.06 -52.48 -0.42 0.43 16 LS Contribution 375.55 15.07 5.66 5.66 Total: -1.00 -32.62 375.55 -8.11 -40.73 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: -5.55 Total: 8.73 kcal Atomic # 6 Polarization: 3.46 SS G_CDS: -3.80 Total: -0.34 kcal Atomic # 7 Polarization: -51.26 SS G_CDS: 0.03 Total: -51.23 kcal Atomic # 8 Polarization: -20.74 SS G_CDS: -0.31 Total: -21.05 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.14 Total: 17.50 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.62 -8.11 -40.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090832125.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.199 kcal (2) G-P(sol) polarization free energy of solvation -32.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds