Wall clock time and date at job start Wed Apr 1 2020 02:43:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.37830 * 120.07050 * 2 1 4 4 C 1.38797 * 120.74124 * 179.97438 * 3 2 1 5 5 C 1.36655 * 120.44291 * 0.05505 * 4 3 2 6 6 C 1.39656 * 119.71270 * 359.93213 * 5 4 3 7 7 C 1.46256 * 134.19816 * 180.02562 * 6 5 4 8 8 C 1.35807 * 106.08254 * 180.02562 * 7 6 5 9 9 C 1.46975 * 125.12954 * 179.97438 * 8 7 6 10 10 O 1.21653 * 120.00037 * 0.02562 * 9 8 7 11 11 N 1.34779 * 120.00385 * 179.97438 * 9 8 7 12 12 C 1.46497 * 120.00246 * 180.02562 * 11 9 8 13 13 H 1.09000 * 109.44906 * 35.03186 * 12 11 9 14 14 C 1.53036 * 109.48382 * 275.08504 * 12 11 9 15 15 C 1.53191 * 109.33888 * 178.64604 * 14 12 11 16 16 N 1.46925 * 108.77600 * 54.61743 * 15 14 12 17 17 C 1.36941 * 120.62940 * 126.41391 * 16 15 14 18 18 H 1.08004 * 119.99695 * 332.60943 * 17 16 15 19 19 C 1.38806 * 119.99865 * 152.61406 * 17 16 15 20 20 N 1.31625 * 120.00017 * 159.34748 * 19 17 16 21 21 Si 1.86805 * 120.00222 * 339.33654 * 19 17 16 22 22 H 1.48502 * 109.46712 * 92.94966 * 21 19 17 23 23 H 1.48497 * 109.47243 * 212.94702 * 21 19 17 24 24 H 1.48493 * 109.46850 * 332.95211 * 21 19 17 25 25 C 1.46929 * 118.73958 * 306.39759 * 16 15 14 26 26 C 1.53044 * 109.45909 * 155.00205 * 12 11 9 27 27 H 1.08996 * 109.49457 * 61.40344 * 26 12 11 28 28 O 1.42898 * 109.49722 * 301.33470 * 26 12 11 29 29 O 1.34952 * 109.74164 * 0.26415 * 8 7 6 30 30 C 1.34713 * 110.86717 * 359.54986 * 29 8 7 31 31 H 1.08999 * 109.47392 * 269.97934 * 1 2 3 32 32 H 1.09000 * 109.47281 * 29.97948 * 1 2 3 33 33 H 1.09001 * 109.46903 * 149.97841 * 1 2 3 34 34 H 1.08005 * 119.63249 * 0.02562 * 3 2 1 35 35 H 1.07996 * 119.77762 * 180.02562 * 4 3 2 36 36 H 1.08007 * 120.14328 * 179.97438 * 5 4 3 37 37 H 1.08002 * 126.96022 * 0.02562 * 7 6 5 38 38 H 0.97003 * 119.99426 * 0.02562 * 11 9 8 39 39 H 1.09002 * 109.49747 * 58.68010 * 14 12 11 40 40 H 1.09000 * 109.50122 * 298.61473 * 14 12 11 41 41 H 1.09006 * 109.58937 * 294.83370 * 15 14 12 42 42 H 1.09002 * 109.59013 * 174.41280 * 15 14 12 43 43 H 0.97000 * 120.00246 * 179.97438 * 20 19 17 44 44 H 1.08997 * 109.58346 * 293.81501 * 25 16 15 45 45 H 1.09006 * 109.69925 * 173.46402 * 25 16 15 46 46 H 0.96693 * 113.99983 * 180.02562 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1977 1.1928 0.0000 4 6 3.5856 1.2090 0.0005 5 6 4.2917 0.0391 -0.0001 6 6 3.6110 -1.1803 0.0002 7 6 4.0295 -2.5817 0.0002 8 6 2.8868 -3.3156 0.0000 9 6 2.8248 -4.7841 -0.0006 10 8 3.8517 -5.4363 -0.0004 11 7 1.6302 -5.4082 -0.0002 12 6 1.5684 -6.8718 -0.0003 13 1 2.3941 -7.2700 0.5895 14 6 1.6742 -7.3872 -1.4374 15 6 1.6433 -8.9188 -1.4307 16 7 0.4387 -9.3643 -0.7170 17 6 -0.4383 -10.2362 -1.3052 18 1 -0.5276 -10.2687 -2.3810 19 6 -1.2125 -11.0780 -0.5186 20 7 -2.3133 -11.6082 -1.0082 21 14 -0.6921 -11.4588 1.2346 22 1 -1.3447 -10.5016 2.1635 23 1 -1.1010 -12.8433 1.5827 24 1 0.7830 -11.3341 1.3511 25 6 0.1933 -8.8569 0.6399 26 6 0.2404 -7.3261 0.6099 27 1 -0.5851 -6.9484 0.0067 28 8 0.1292 -6.8194 1.9414 29 8 1.8168 -2.4932 -0.0060 30 6 2.2035 -1.2028 0.0000 31 1 -0.3634 -0.0004 1.0276 32 1 -0.3634 0.8902 -0.5135 33 1 -0.3633 -0.8898 -0.5142 34 1 1.6528 2.1253 0.0004 35 1 4.1109 2.1526 0.0009 36 1 5.3716 0.0574 -0.0001 37 1 5.0422 -2.9570 0.0004 38 1 0.8114 -4.8881 0.0000 39 1 2.6099 -7.0441 -1.8789 40 1 0.8358 -7.0089 -2.0222 41 1 2.5300 -9.3000 -0.9242 42 1 1.6184 -9.2883 -2.4558 43 1 -2.8542 -12.1967 -0.4587 44 1 0.9617 -9.2331 1.3152 45 1 -0.7877 -9.1857 0.9832 46 1 -0.6900 -7.0693 2.3902 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090834771.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:43:36 Heat of formation + Delta-G solvation = -30.135535 kcal Electronic energy + Delta-G solvation = -29848.932844 eV Core-core repulsion = 25705.683584 eV Total energy + Delta-G solvation = -4143.249260 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.78268 -39.94375 -38.48500 -38.07886 -35.56358 -34.69469 -33.92523 -32.30842 -31.70154 -30.64509 -29.75441 -29.11056 -27.28120 -25.60288 -23.92275 -23.01395 -22.96665 -21.72571 -21.02398 -20.61091 -19.86356 -18.30418 -17.79206 -17.02513 -16.91168 -16.65580 -16.42833 -15.95025 -15.42321 -15.00030 -14.75140 -14.39460 -14.27067 -14.09874 -13.86109 -13.74087 -13.46245 -13.39095 -13.26983 -12.91714 -12.74522 -12.50582 -12.45991 -12.28468 -12.19538 -12.02132 -11.45447 -11.33205 -11.07601 -10.97370 -10.56108 -10.46046 -10.37950 -10.33496 -9.85078 -9.69505 -9.56737 -9.08035 -8.91493 -8.72625 -8.45575 -7.12326 -6.04944 -3.42571 0.28373 0.99207 1.58005 2.20805 3.03488 3.06345 3.21583 3.31520 3.42497 3.45759 4.13938 4.21086 4.30061 4.43124 4.47986 4.63313 4.80158 4.84944 4.87468 5.01024 5.12415 5.16071 5.21456 5.23444 5.28080 5.37184 5.42406 5.55194 5.65054 5.70386 5.74013 5.83759 5.91576 5.98151 5.99921 6.06775 6.14107 6.18255 6.22932 6.33740 6.45240 6.49597 6.54911 6.72047 6.77384 7.43337 7.74556 7.90130 8.01911 8.22684 8.81374 9.60112 9.95645 11.10518 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.022648 B = 0.002394 C = 0.002305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.035994 B =11692.253646 C =12143.076375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.074 4.074 3 C -0.091 4.091 4 C -0.135 4.135 5 C -0.067 4.067 6 C -0.139 4.139 7 C -0.120 4.120 8 C -0.016 4.016 9 C 0.597 3.403 10 O -0.517 6.517 11 N -0.699 5.699 12 C 0.160 3.840 13 H 0.093 0.907 14 C -0.143 4.143 15 C 0.148 3.852 16 N -0.602 5.602 17 C -0.263 4.263 18 H 0.089 0.911 19 C 0.024 3.976 20 N -0.904 5.904 21 Si 0.881 3.119 22 H -0.289 1.289 23 H -0.301 1.301 24 H -0.269 1.269 25 C 0.102 3.898 26 C 0.080 3.920 27 H 0.065 0.935 28 O -0.571 6.571 29 O -0.181 6.181 30 C 0.069 3.931 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.070 0.930 34 H 0.136 0.864 35 H 0.131 0.869 36 H 0.130 0.870 37 H 0.170 0.830 38 H 0.405 0.595 39 H 0.070 0.930 40 H 0.068 0.932 41 H 0.030 0.970 42 H 0.072 0.928 43 H 0.264 0.736 44 H 0.037 0.963 45 H 0.080 0.920 46 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.345 25.991 2.785 27.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.075 4.075 3 C -0.109 4.109 4 C -0.153 4.153 5 C -0.085 4.085 6 C -0.140 4.140 7 C -0.141 4.141 8 C -0.066 4.066 9 C 0.381 3.619 10 O -0.395 6.395 11 N -0.347 5.347 12 C 0.057 3.943 13 H 0.111 0.889 14 C -0.183 4.183 15 C 0.022 3.978 16 N -0.327 5.327 17 C -0.391 4.391 18 H 0.107 0.893 19 C -0.175 4.175 20 N -0.547 5.547 21 Si 0.711 3.289 22 H -0.217 1.217 23 H -0.229 1.229 24 H -0.194 1.194 25 C -0.025 4.025 26 C 0.019 3.981 27 H 0.083 0.917 28 O -0.376 6.376 29 O -0.083 6.083 30 C 0.020 3.980 31 H 0.093 0.907 32 H 0.091 0.909 33 H 0.089 0.911 34 H 0.154 0.846 35 H 0.149 0.851 36 H 0.148 0.852 37 H 0.188 0.812 38 H 0.240 0.760 39 H 0.088 0.912 40 H 0.087 0.913 41 H 0.048 0.952 42 H 0.090 0.910 43 H 0.074 0.926 44 H 0.055 0.945 45 H 0.098 0.902 46 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 9.214 25.505 2.638 27.246 hybrid contribution -0.652 -0.253 1.189 1.379 sum 8.562 25.252 3.827 26.937 Atomic orbital electron populations 1.20774 0.90063 1.03403 1.02920 1.18869 0.96442 0.88278 1.03881 1.20899 0.94230 0.96429 0.99337 1.20771 0.94021 0.98146 1.02327 1.20349 1.00100 0.89981 0.98113 1.19927 0.93029 0.93990 1.07022 1.22728 0.99329 0.90001 1.02000 1.22150 0.85377 0.91081 1.07976 1.16654 0.84693 0.82993 0.77517 1.90888 1.33899 1.63821 1.50852 1.45999 1.07749 1.08368 1.72609 1.21097 0.98261 0.77545 0.97439 0.88850 1.22455 1.02130 0.99128 0.94577 1.20971 0.88927 0.90384 0.97503 1.44340 1.23238 1.51621 1.13469 1.18934 1.14413 1.12583 0.93212 0.89321 1.25305 0.96855 0.97484 0.97878 1.69833 1.12960 1.34392 1.37496 0.86994 0.79521 0.76704 0.85654 1.21725 1.22897 1.19401 1.22032 1.00981 0.90828 0.88670 1.22791 0.96239 0.96158 0.82949 0.91740 1.86440 1.45376 1.77471 1.28280 1.84020 1.33943 1.14277 1.76036 1.19557 0.92807 0.83394 1.02205 0.90739 0.90923 0.91077 0.84638 0.85112 0.85187 0.81208 0.76017 0.91159 0.91301 0.95204 0.90961 0.92626 0.94486 0.90229 0.77463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.84 10.02 36.01 0.36 -0.47 16 2 C -0.07 -0.69 5.89 -104.49 -0.62 -1.30 16 3 C -0.09 -0.66 9.67 -39.52 -0.38 -1.04 16 4 C -0.13 -0.95 9.98 -39.95 -0.40 -1.35 16 5 C -0.07 -0.58 10.06 -39.62 -0.40 -0.98 16 6 C -0.14 -1.56 6.38 -105.19 -0.67 -2.23 16 7 C -0.12 -1.45 10.80 -37.23 -0.40 -1.86 16 8 C -0.02 -0.21 7.07 -36.91 -0.26 -0.48 16 9 C 0.60 9.18 7.76 -12.72 -0.10 9.08 16 10 O -0.52 -9.25 16.49 5.23 0.09 -9.17 16 11 N -0.70 -10.29 4.92 -54.98 -0.27 -10.56 16 12 C 0.16 2.67 2.12 -67.89 -0.14 2.53 16 13 H 0.09 1.73 7.58 -51.93 -0.39 1.34 16 14 C -0.14 -2.37 5.65 -26.61 -0.15 -2.52 16 15 C 0.15 2.86 6.52 -3.71 -0.02 2.84 16 16 N -0.60 -13.73 2.77 -172.32 -0.48 -14.21 16 17 C -0.26 -7.08 10.04 -15.06 -0.15 -7.23 16 18 H 0.09 2.54 8.06 -52.48 -0.42 2.12 16 19 C 0.02 0.68 5.23 -17.43 -0.09 0.58 16 20 N -0.90 -26.90 13.97 55.49 0.78 -26.12 16 21 Si 0.88 21.70 24.35 -169.99 -4.14 17.56 16 22 H -0.29 -6.74 6.62 56.52 0.37 -6.36 16 23 H -0.30 -7.60 7.11 56.52 0.40 -7.20 16 24 H -0.27 -6.61 6.63 56.52 0.37 -6.24 16 25 C 0.10 2.12 3.83 -3.71 -0.01 2.11 16 26 C 0.08 1.37 3.14 -26.61 -0.08 1.29 16 27 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 28 O -0.57 -8.95 13.16 -35.23 -0.46 -9.41 16 29 O -0.18 -2.34 10.28 2.77 0.03 -2.31 16 30 C 0.07 0.80 7.07 -38.35 -0.27 0.53 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.07 0.39 8.09 -51.93 -0.42 -0.03 16 33 H 0.07 0.57 8.09 -51.93 -0.42 0.15 16 34 H 0.14 0.61 8.06 -52.48 -0.42 0.19 16 35 H 0.13 0.57 8.06 -52.49 -0.42 0.15 16 36 H 0.13 0.82 8.06 -52.48 -0.42 0.40 16 37 H 0.17 1.80 8.06 -52.49 -0.42 1.38 16 38 H 0.41 5.31 8.32 -40.82 -0.34 4.97 16 39 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 41 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.07 1.36 7.93 -51.93 -0.41 0.95 16 43 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 44 H 0.04 0.80 7.07 -51.93 -0.37 0.43 16 45 H 0.08 1.77 4.50 -51.93 -0.23 1.54 16 46 H 0.38 4.63 9.08 45.56 0.41 5.04 16 LS Contribution 377.47 15.07 5.69 5.69 Total: -1.00 -32.65 377.47 -8.16 -40.80 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: -5.59 Total: 8.23 kcal Atomic # 6 Polarization: 3.30 SS G_CDS: -3.80 Total: -0.50 kcal Atomic # 7 Polarization: -50.92 SS G_CDS: 0.03 Total: -50.89 kcal Atomic # 8 Polarization: -20.54 SS G_CDS: -0.35 Total: -20.88 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.14 Total: 17.56 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.65 -8.16 -40.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090834771.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.668 kcal (2) G-P(sol) polarization free energy of solvation -32.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds