Wall clock time and date at job start Wed Apr 1 2020 02:43:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.37830 * 120.07050 * 2 1 4 4 C 1.38797 * 120.74124 * 179.97438 * 3 2 1 5 5 C 1.36655 * 120.44291 * 0.05505 * 4 3 2 6 6 C 1.39656 * 119.71270 * 359.93213 * 5 4 3 7 7 C 1.46256 * 134.19816 * 180.02562 * 6 5 4 8 8 C 1.35807 * 106.08254 * 180.02562 * 7 6 5 9 9 C 1.46975 * 125.12954 * 179.97438 * 8 7 6 10 10 O 1.21653 * 120.00037 * 0.02562 * 9 8 7 11 11 N 1.34779 * 120.00385 * 179.97438 * 9 8 7 12 12 C 1.46497 * 120.00246 * 180.02562 * 11 9 8 13 13 H 1.09000 * 109.44906 * 35.03186 * 12 11 9 14 14 C 1.53036 * 109.48382 * 275.08504 * 12 11 9 15 15 C 1.53191 * 109.33888 * 178.64604 * 14 12 11 16 16 N 1.46925 * 108.77600 * 54.61743 * 15 14 12 17 17 C 1.36941 * 120.62940 * 126.41391 * 16 15 14 18 18 H 1.08004 * 119.99695 * 332.60943 * 17 16 15 19 19 C 1.38806 * 119.99865 * 152.61406 * 17 16 15 20 20 N 1.31625 * 120.00017 * 159.34748 * 19 17 16 21 21 Si 1.86805 * 120.00222 * 339.33654 * 19 17 16 22 22 H 1.48502 * 109.46712 * 92.94966 * 21 19 17 23 23 H 1.48497 * 109.47243 * 212.94702 * 21 19 17 24 24 H 1.48493 * 109.46850 * 332.95211 * 21 19 17 25 25 C 1.46929 * 118.73958 * 306.39759 * 16 15 14 26 26 C 1.53044 * 109.45909 * 155.00205 * 12 11 9 27 27 H 1.08996 * 109.49457 * 61.40344 * 26 12 11 28 28 O 1.42898 * 109.49722 * 301.33470 * 26 12 11 29 29 O 1.34952 * 109.74164 * 0.26415 * 8 7 6 30 30 C 1.34713 * 110.86717 * 359.54986 * 29 8 7 31 31 H 1.08999 * 109.47392 * 269.97934 * 1 2 3 32 32 H 1.09000 * 109.47281 * 29.97948 * 1 2 3 33 33 H 1.09001 * 109.46903 * 149.97841 * 1 2 3 34 34 H 1.08005 * 119.63249 * 0.02562 * 3 2 1 35 35 H 1.07996 * 119.77762 * 180.02562 * 4 3 2 36 36 H 1.08007 * 120.14328 * 179.97438 * 5 4 3 37 37 H 1.08002 * 126.96022 * 0.02562 * 7 6 5 38 38 H 0.97003 * 119.99426 * 0.02562 * 11 9 8 39 39 H 1.09002 * 109.49747 * 58.68010 * 14 12 11 40 40 H 1.09000 * 109.50122 * 298.61473 * 14 12 11 41 41 H 1.09006 * 109.58937 * 294.83370 * 15 14 12 42 42 H 1.09002 * 109.59013 * 174.41280 * 15 14 12 43 43 H 0.97000 * 120.00246 * 179.97438 * 20 19 17 44 44 H 1.08997 * 109.58346 * 293.81501 * 25 16 15 45 45 H 1.09006 * 109.69925 * 173.46402 * 25 16 15 46 46 H 0.96693 * 113.99983 * 180.02562 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1977 1.1928 0.0000 4 6 3.5856 1.2090 0.0005 5 6 4.2917 0.0391 -0.0001 6 6 3.6110 -1.1803 0.0002 7 6 4.0295 -2.5817 0.0002 8 6 2.8868 -3.3156 0.0000 9 6 2.8248 -4.7841 -0.0006 10 8 3.8517 -5.4363 -0.0004 11 7 1.6302 -5.4082 -0.0002 12 6 1.5684 -6.8718 -0.0003 13 1 2.3941 -7.2700 0.5895 14 6 1.6742 -7.3872 -1.4374 15 6 1.6433 -8.9188 -1.4307 16 7 0.4387 -9.3643 -0.7170 17 6 -0.4383 -10.2362 -1.3052 18 1 -0.5276 -10.2687 -2.3810 19 6 -1.2125 -11.0780 -0.5186 20 7 -2.3133 -11.6082 -1.0082 21 14 -0.6921 -11.4588 1.2346 22 1 -1.3447 -10.5016 2.1635 23 1 -1.1010 -12.8433 1.5827 24 1 0.7830 -11.3341 1.3511 25 6 0.1933 -8.8569 0.6399 26 6 0.2404 -7.3261 0.6099 27 1 -0.5851 -6.9484 0.0067 28 8 0.1292 -6.8194 1.9414 29 8 1.8168 -2.4932 -0.0060 30 6 2.2035 -1.2028 0.0000 31 1 -0.3634 -0.0004 1.0276 32 1 -0.3634 0.8902 -0.5135 33 1 -0.3633 -0.8898 -0.5142 34 1 1.6528 2.1253 0.0004 35 1 4.1109 2.1526 0.0009 36 1 5.3716 0.0574 -0.0001 37 1 5.0422 -2.9570 0.0004 38 1 0.8114 -4.8881 0.0000 39 1 2.6099 -7.0441 -1.8789 40 1 0.8358 -7.0089 -2.0222 41 1 2.5300 -9.3000 -0.9242 42 1 1.6184 -9.2883 -2.4558 43 1 -2.8542 -12.1967 -0.4587 44 1 0.9617 -9.2331 1.3152 45 1 -0.7877 -9.1857 0.9832 46 1 -0.6900 -7.0693 2.3902 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090834771.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:43:35 Heat of formation + Delta-G solvation = -53.903439 kcal Electronic energy + Delta-G solvation = -29849.963497 eV Core-core repulsion = 25705.683584 eV Total energy + Delta-G solvation = -4144.279914 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.61565 -41.21473 -39.67732 -38.99580 -37.08093 -36.06632 -34.65502 -34.15808 -32.42597 -32.16446 -30.99166 -30.41840 -27.87464 -27.20286 -25.26507 -24.43992 -23.69377 -23.26199 -21.80066 -21.71191 -21.36209 -19.49935 -18.75851 -18.54024 -18.35051 -17.82020 -17.55869 -16.84644 -16.65439 -16.17670 -16.15199 -15.91847 -15.42595 -15.21278 -15.07284 -14.78850 -14.66453 -14.39217 -14.34170 -14.11561 -14.08220 -14.01350 -13.73419 -13.27472 -13.11635 -12.91415 -12.74751 -12.59044 -12.54802 -12.39455 -12.06081 -11.95795 -11.79019 -11.64413 -11.37080 -11.15806 -11.14679 -10.72010 -10.32431 -9.67579 -9.19327 -9.04505 -8.19904 -5.54079 -0.53779 0.31397 0.73215 1.25105 1.30572 1.41385 1.49145 1.92542 1.95483 2.36956 2.66224 2.84435 3.09144 3.28431 3.30051 3.50996 3.70217 3.84270 3.93341 3.94400 4.00118 4.01209 4.19954 4.29414 4.30164 4.37249 4.47780 4.48931 4.55896 4.64487 4.71021 4.76224 4.83226 4.84564 4.87252 4.97833 4.98549 5.18374 5.23126 5.27866 5.28848 5.39245 5.45197 5.54087 5.80557 5.97736 6.09570 6.29544 6.67366 6.84005 6.85945 7.54275 7.93879 8.99301 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.022648 B = 0.002394 C = 0.002305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.035994 B =11692.253646 C =12143.076375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.092 4.092 3 C -0.079 4.079 4 C -0.129 4.129 5 C -0.073 4.073 6 C -0.162 4.162 7 C -0.110 4.110 8 C -0.043 4.043 9 C 0.600 3.400 10 O -0.548 6.548 11 N -0.692 5.692 12 C 0.166 3.834 13 H 0.077 0.923 14 C -0.129 4.129 15 C 0.145 3.855 16 N -0.614 5.614 17 C -0.251 4.251 18 H 0.060 0.940 19 C -0.029 4.029 20 N -0.951 5.951 21 Si 0.940 3.060 22 H -0.267 1.267 23 H -0.311 1.311 24 H -0.268 1.268 25 C 0.098 3.902 26 C 0.096 3.904 27 H 0.070 0.930 28 O -0.570 6.570 29 O -0.192 6.192 30 C 0.045 3.955 31 H 0.078 0.922 32 H 0.095 0.905 33 H 0.056 0.944 34 H 0.170 0.830 35 H 0.166 0.834 36 H 0.151 0.849 37 H 0.179 0.821 38 H 0.414 0.586 39 H 0.080 0.920 40 H 0.071 0.929 41 H 0.035 0.965 42 H 0.071 0.929 43 H 0.263 0.737 44 H 0.035 0.965 45 H 0.067 0.933 46 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.310 29.803 3.865 31.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.093 4.093 3 C -0.097 4.097 4 C -0.146 4.146 5 C -0.091 4.091 6 C -0.163 4.163 7 C -0.131 4.131 8 C -0.093 4.093 9 C 0.386 3.614 10 O -0.429 6.429 11 N -0.340 5.340 12 C 0.061 3.939 13 H 0.095 0.905 14 C -0.169 4.169 15 C 0.020 3.980 16 N -0.339 5.339 17 C -0.380 4.380 18 H 0.078 0.922 19 C -0.225 4.225 20 N -0.596 5.596 21 Si 0.769 3.231 22 H -0.193 1.193 23 H -0.239 1.239 24 H -0.193 1.193 25 C -0.028 4.028 26 C 0.035 3.965 27 H 0.088 0.912 28 O -0.378 6.378 29 O -0.094 6.094 30 C -0.003 4.003 31 H 0.097 0.903 32 H 0.114 0.886 33 H 0.075 0.925 34 H 0.187 0.813 35 H 0.183 0.817 36 H 0.169 0.831 37 H 0.197 0.803 38 H 0.250 0.750 39 H 0.099 0.901 40 H 0.090 0.910 41 H 0.053 0.947 42 H 0.089 0.911 43 H 0.072 0.928 44 H 0.053 0.947 45 H 0.085 0.915 46 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 10.182 29.371 3.742 31.310 hybrid contribution -0.889 -1.220 0.802 1.709 sum 9.293 28.151 4.544 29.991 Atomic orbital electron populations 1.20801 0.89010 1.03866 1.03336 1.19276 0.97538 0.88067 1.04413 1.21403 0.94690 0.96902 0.96721 1.21243 0.94147 0.98978 1.00281 1.20723 1.01408 0.89461 0.97510 1.20156 0.93197 0.94341 1.08561 1.22998 0.99349 0.90794 0.99938 1.21752 0.86225 0.90294 1.11038 1.16806 0.84170 0.83792 0.76596 1.90858 1.34754 1.64852 1.52388 1.45806 1.08200 1.07479 1.72534 1.20864 0.97334 0.78720 0.96938 0.90458 1.22273 1.02783 0.96952 0.94874 1.21097 0.87666 0.92153 0.97123 1.44423 1.23855 1.51365 1.14292 1.18866 1.14193 1.12714 0.92211 0.92241 1.25865 0.96927 0.97940 1.01745 1.69950 1.14407 1.36042 1.39244 0.86031 0.79061 0.76211 0.81835 1.19304 1.23945 1.19315 1.22048 1.00027 0.93346 0.87353 1.22416 0.96674 0.93443 0.83973 0.91205 1.86430 1.46780 1.77066 1.27480 1.83960 1.33760 1.14966 1.76709 1.20078 0.93667 0.83423 1.03131 0.90312 0.88628 0.92466 0.81264 0.81662 0.83113 0.80341 0.74998 0.90115 0.91033 0.94680 0.91065 0.92777 0.94719 0.91509 0.75513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.44 10.02 71.24 0.71 -0.72 16 2 C -0.09 -1.52 5.89 -19.78 -0.12 -1.63 16 3 C -0.08 -0.85 9.67 22.31 0.22 -0.64 16 4 C -0.13 -1.30 9.98 22.03 0.22 -1.08 16 5 C -0.07 -1.05 10.06 22.24 0.22 -0.83 16 6 C -0.16 -3.43 6.38 -20.23 -0.13 -3.56 16 7 C -0.11 -2.63 10.80 23.79 0.26 -2.38 16 8 C -0.04 -1.18 7.07 24.00 0.17 -1.01 16 9 C 0.60 18.46 7.76 86.53 0.67 19.13 16 10 O -0.55 -19.74 16.49 -4.20 -0.07 -19.81 16 11 N -0.69 -20.01 4.92 -446.10 -2.19 -22.20 16 12 C 0.17 5.41 2.12 45.02 0.10 5.51 16 13 H 0.08 2.82 7.58 -2.39 -0.02 2.81 16 14 C -0.13 -4.20 5.65 30.67 0.17 -4.03 16 15 C 0.14 5.55 6.52 86.36 0.56 6.12 16 16 N -0.61 -27.98 2.77 -699.09 -1.94 -29.91 16 17 C -0.25 -13.73 10.04 84.03 0.84 -12.88 16 18 H 0.06 3.54 8.06 -2.91 -0.02 3.52 16 19 C -0.03 -1.66 5.23 84.86 0.44 -1.22 16 20 N -0.95 -58.02 13.97 21.65 0.30 -57.72 16 21 Si 0.94 45.16 24.35 68.60 1.67 46.83 16 22 H -0.27 -11.71 6.62 99.48 0.66 -11.05 16 23 H -0.31 -15.33 7.11 99.48 0.71 -14.62 16 24 H -0.27 -12.72 6.63 99.48 0.66 -12.06 16 25 C 0.10 4.02 3.83 86.36 0.33 4.35 16 26 C 0.10 3.19 3.14 30.67 0.10 3.29 16 27 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 28 O -0.57 -16.81 13.16 -148.98 -1.96 -18.77 16 29 O -0.19 -4.95 10.28 -13.02 -0.13 -5.08 16 30 C 0.04 1.01 7.07 23.07 0.16 1.17 16 31 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.09 0.73 8.09 -2.39 -0.02 0.71 16 33 H 0.06 0.87 8.09 -2.39 -0.02 0.85 16 34 H 0.17 0.64 8.06 -2.91 -0.02 0.62 16 35 H 0.17 0.54 8.06 -2.91 -0.02 0.52 16 36 H 0.15 1.44 8.06 -2.91 -0.02 1.42 16 37 H 0.18 3.72 8.06 -2.91 -0.02 3.70 16 38 H 0.41 10.58 8.32 -92.71 -0.77 9.80 16 39 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 40 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 41 H 0.04 1.32 8.14 -2.38 -0.02 1.30 16 42 H 0.07 2.71 7.93 -2.39 -0.02 2.69 16 43 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 44 H 0.03 1.45 7.07 -2.39 -0.02 1.43 16 45 H 0.07 2.89 4.50 -2.38 -0.01 2.88 16 46 H 0.40 8.75 9.08 -74.06 -0.67 8.07 16 Total: -1.00 -72.19 377.47 0.11 -72.08 By element: Atomic # 1 Polarization: 25.51 SS G_CDS: -0.51 Total: 25.00 kcal Atomic # 6 Polarization: 4.64 SS G_CDS: 4.93 Total: 9.58 kcal Atomic # 7 Polarization: -106.01 SS G_CDS: -3.83 Total: -109.83 kcal Atomic # 8 Polarization: -41.50 SS G_CDS: -2.16 Total: -43.66 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 1.67 Total: 46.83 kcal Total: -72.19 0.11 -72.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090834771.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.181 kcal (2) G-P(sol) polarization free energy of solvation -72.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds