Wall clock time and date at job start Wed Apr 1 2020 02:35:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.36662 * 120.14719 * 2 1 4 4 C 1.38790 * 120.44462 * 179.97438 * 3 2 1 5 5 C 1.37843 * 120.74427 * 359.97438 * 4 3 2 6 6 C 1.38981 * 119.85446 * 0.02562 * 5 4 3 7 7 O 1.34716 * 133.24808 * 180.02562 * 6 5 4 8 8 C 1.34954 * 110.86357 * 179.97438 * 7 6 5 9 9 C 1.46974 * 125.12934 * 179.97438 * 8 7 6 10 10 O 1.21651 * 120.00475 * 180.02562 * 9 8 7 11 11 N 1.34780 * 119.99900 * 0.02562 * 9 8 7 12 12 C 1.46504 * 120.00103 * 179.97438 * 11 9 8 13 13 H 1.09000 * 109.45330 * 35.03522 * 12 11 9 14 14 C 1.53031 * 109.45082 * 275.06787 * 12 11 9 15 15 C 1.53197 * 109.31337 * 301.34756 * 14 12 11 16 16 N 1.46923 * 108.77587 * 305.36720 * 15 14 12 17 17 C 1.36933 * 120.63142 * 233.88375 * 16 15 14 18 18 H 1.08001 * 120.00321 * 151.59000 * 17 16 15 19 19 C 1.38815 * 119.99826 * 331.58665 * 17 16 15 20 20 N 1.31621 * 119.99984 * 343.17890 * 19 17 16 21 21 Si 1.86800 * 120.00122 * 163.17569 * 19 17 16 22 22 H 1.48504 * 109.46788 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.47041 * 119.99977 * 21 19 17 24 24 H 1.48497 * 109.47258 * 240.00106 * 21 19 17 25 25 C 1.46930 * 118.73796 * 53.60798 * 16 15 14 26 26 C 1.53033 * 109.45980 * 155.00239 * 12 11 9 27 27 H 1.09001 * 109.52989 * 178.61222 * 26 12 11 28 28 O 1.42902 * 109.50226 * 298.69410 * 26 12 11 29 29 C 1.35806 * 109.74486 * 0.23880 * 8 7 6 30 30 C 1.39663 * 120.14644 * 180.02562 * 2 1 3 31 31 H 1.09012 * 109.47013 * 90.00099 * 1 2 3 32 32 H 1.08998 * 109.47363 * 209.99967 * 1 2 3 33 33 H 1.09000 * 109.47139 * 330.00504 * 1 2 3 34 34 H 1.08005 * 119.77549 * 0.02562 * 3 2 1 35 35 H 1.08007 * 119.62768 * 180.02562 * 4 3 2 36 36 H 1.08002 * 120.06920 * 179.97438 * 5 4 3 37 37 H 0.96999 * 120.00303 * 0.02562 * 11 9 8 38 38 H 1.08998 * 109.50320 * 61.30163 * 14 12 11 39 39 H 1.09005 * 109.49738 * 181.36720 * 14 12 11 40 40 H 1.08999 * 109.58367 * 185.57511 * 15 14 12 41 41 H 1.08997 * 109.58399 * 65.15637 * 15 14 12 42 42 H 0.97002 * 120.00123 * 180.02562 * 20 19 17 43 43 H 1.08998 * 109.58579 * 66.17454 * 25 16 15 44 44 H 1.08997 * 109.58590 * 186.60574 * 25 16 15 45 45 H 0.96699 * 114.00402 * 179.83547 * 28 26 12 46 46 H 1.07998 * 126.96177 * 179.72120 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1933 1.1818 0.0000 4 6 3.5812 1.1890 0.0005 5 6 4.2920 0.0079 0.0016 6 6 3.6160 -1.2064 0.0016 7 8 4.0244 -2.4901 0.0029 8 6 2.9684 -3.3305 0.0028 9 6 3.0551 -4.7976 0.0035 10 8 2.0393 -5.4671 0.0029 11 7 4.2601 -5.4015 0.0049 12 6 4.3465 -6.8640 0.0061 13 1 3.5283 -7.2765 -0.5841 14 6 4.2484 -7.3790 1.4438 15 6 5.3794 -6.7700 2.2785 16 7 6.6609 -7.0584 1.6204 17 6 7.6766 -7.6676 2.3076 18 1 8.3958 -8.2771 1.7805 19 6 7.7819 -7.5019 3.6818 20 7 7.1358 -6.5224 4.2780 21 14 8.8407 -8.6691 4.6849 22 1 9.4572 -9.6761 3.7843 23 1 9.9092 -7.9008 5.3728 24 1 7.9978 -9.3578 5.6950 25 6 6.8298 -6.6862 0.2091 26 6 5.6825 -7.2962 -0.6023 27 1 5.7586 -8.3833 -0.5794 28 8 5.7603 -6.8411 -1.9547 29 6 1.8135 -2.6160 -0.0039 30 6 2.2083 -1.2077 -0.0005 31 1 -0.3634 0.0000 -1.0278 32 1 -0.3634 -0.8900 0.5138 33 1 -0.3633 0.8900 0.5137 34 1 1.6520 2.1164 0.0004 35 1 4.1102 2.1306 0.0009 36 1 5.3718 0.0263 0.0016 37 1 5.0700 -4.8678 0.0057 38 1 3.2869 -7.0909 1.8687 39 1 4.3370 -8.4654 1.4479 40 1 5.3741 -7.2087 3.2763 41 1 5.2402 -5.6914 2.3507 42 1 7.2097 -6.4064 5.2382 43 1 6.8089 -5.6007 0.1125 44 1 7.7816 -7.0696 -0.1585 45 1 6.5839 -7.0780 -2.4027 46 1 0.8073 -3.0082 -0.0099 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090839576.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:35:47 Heat of formation + Delta-G solvation = -33.566414 kcal Electronic energy + Delta-G solvation = -30311.789584 eV Core-core repulsion = 26168.391550 eV Total energy + Delta-G solvation = -4143.398034 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.56210 -39.83812 -38.34706 -37.85500 -35.47352 -34.19282 -33.49038 -31.87984 -31.67713 -30.51087 -29.64018 -28.59626 -27.05982 -25.47613 -24.03816 -22.80133 -22.33756 -21.89423 -21.01622 -20.58766 -18.84708 -18.38445 -17.28368 -17.11156 -16.58657 -16.41141 -16.11658 -15.53284 -15.05881 -14.95631 -14.58979 -14.32893 -14.11264 -13.91247 -13.82679 -13.70174 -13.31226 -13.23134 -13.20118 -12.74886 -12.51756 -12.36866 -12.04621 -11.90939 -11.86081 -11.70239 -11.21809 -11.14326 -10.92577 -10.74557 -10.39687 -10.25695 -10.21271 -10.12850 -9.97630 -9.81354 -9.46734 -8.85785 -8.71932 -8.54977 -8.23843 -6.79672 -5.88766 -3.33844 0.48498 1.18303 1.79840 2.45095 3.28335 3.31400 3.32453 3.39816 3.41434 3.48835 4.30167 4.35263 4.46117 4.51510 4.62442 4.91160 4.93795 5.08218 5.13533 5.24643 5.26384 5.30712 5.37174 5.41599 5.47892 5.52818 5.54620 5.65639 5.78697 5.89384 5.98261 6.00121 6.09176 6.17786 6.20026 6.30445 6.39362 6.42663 6.47412 6.60269 6.64464 6.79025 6.95742 7.23742 7.56126 7.69662 7.70185 7.88652 8.26275 8.33475 9.08957 9.71151 10.26678 11.19384 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.013634 B = 0.002895 C = 0.002669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2053.233736 B = 9669.374678 C =10488.498736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.029 4.029 3 C -0.145 4.145 4 C -0.083 4.083 5 C -0.115 4.115 6 C 0.074 3.926 7 O -0.180 6.180 8 C -0.011 4.011 9 C 0.597 3.403 10 O -0.526 6.526 11 N -0.687 5.687 12 C 0.164 3.836 13 H 0.083 0.917 14 C -0.155 4.155 15 C 0.171 3.829 16 N -0.586 5.586 17 C -0.260 4.260 18 H 0.067 0.933 19 C 0.006 3.994 20 N -0.898 5.898 21 Si 0.904 3.096 22 H -0.277 1.277 23 H -0.290 1.290 24 H -0.288 1.288 25 C 0.117 3.883 26 C 0.075 3.925 27 H 0.069 0.931 28 O -0.571 6.571 29 C -0.122 4.122 30 C -0.142 4.142 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.129 0.871 35 H 0.136 0.864 36 H 0.135 0.865 37 H 0.409 0.591 38 H 0.065 0.935 39 H 0.070 0.930 40 H 0.091 0.909 41 H 0.022 0.978 42 H 0.255 0.745 43 H 0.023 0.977 44 H 0.061 0.939 45 H 0.375 0.625 46 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.122 12.409 -10.368 18.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.029 4.029 3 C -0.163 4.163 4 C -0.101 4.101 5 C -0.133 4.133 6 C 0.026 3.974 7 O -0.081 6.081 8 C -0.062 4.062 9 C 0.382 3.618 10 O -0.404 6.404 11 N -0.337 5.337 12 C 0.060 3.940 13 H 0.101 0.899 14 C -0.195 4.195 15 C 0.045 3.955 16 N -0.311 5.311 17 C -0.389 4.389 18 H 0.085 0.915 19 C -0.193 4.193 20 N -0.541 5.541 21 Si 0.734 3.266 22 H -0.202 1.202 23 H -0.217 1.217 24 H -0.214 1.214 25 C -0.011 4.011 26 C 0.015 3.985 27 H 0.087 0.913 28 O -0.375 6.375 29 C -0.142 4.142 30 C -0.143 4.143 31 H 0.093 0.907 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.147 0.853 35 H 0.154 0.846 36 H 0.153 0.847 37 H 0.246 0.754 38 H 0.083 0.917 39 H 0.089 0.911 40 H 0.109 0.891 41 H 0.040 0.960 42 H 0.065 0.935 43 H 0.041 0.959 44 H 0.079 0.921 45 H 0.221 0.779 46 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -10.107 12.073 -10.046 18.677 hybrid contribution 1.503 -0.456 0.551 1.664 sum -8.604 11.617 -9.495 17.296 Atomic orbital electron populations 1.20820 0.90641 1.03209 1.02692 1.19141 0.96121 0.90696 0.96933 1.20654 0.94182 0.97397 1.04041 1.20947 0.94000 0.97033 0.98099 1.20010 1.00513 0.87591 1.05200 1.19749 0.92708 0.83935 1.01053 1.84079 1.34148 1.14095 1.75781 1.22142 0.85571 0.90910 1.07529 1.16622 0.84597 0.83104 0.77527 1.90846 1.35168 1.62734 1.51698 1.45902 1.07784 1.08355 1.71669 1.20964 0.96923 0.78682 0.97439 0.89871 1.22619 1.01293 1.01273 0.94277 1.20807 0.81606 0.96811 0.96280 1.44000 1.11602 1.69736 1.05726 1.19187 1.06913 1.22600 0.90192 0.91518 1.25078 0.99120 0.97135 0.97990 1.70042 1.45442 1.29105 1.09554 0.86208 0.79709 0.80530 0.80192 1.20209 1.21663 1.21443 1.21556 0.95631 0.96686 0.87184 1.22748 0.96269 0.98285 0.81238 0.91263 1.86481 1.43396 1.81827 1.25833 1.22624 0.99013 0.90055 1.02538 1.19757 0.93027 0.93502 1.08005 0.90709 0.91108 0.91126 0.85300 0.84634 0.84676 0.75419 0.91680 0.91110 0.89104 0.96026 0.93515 0.95922 0.92098 0.77859 0.81425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.93 9.95 36.00 0.36 -0.57 16 2 C -0.03 -0.31 5.88 -104.66 -0.62 -0.92 16 3 C -0.14 -1.31 9.63 -39.95 -0.38 -1.70 16 4 C -0.08 -0.75 10.01 -39.52 -0.40 -1.15 16 5 C -0.11 -1.31 10.07 -39.45 -0.40 -1.70 16 6 C 0.07 1.06 7.41 -38.35 -0.28 0.77 16 7 O -0.18 -2.90 10.28 2.75 0.03 -2.87 16 8 C -0.01 -0.19 7.07 -36.92 -0.26 -0.45 16 9 C 0.60 10.69 7.76 -12.72 -0.10 10.59 16 10 O -0.53 -10.33 16.49 5.23 0.09 -10.24 16 11 N -0.69 -12.19 4.15 -54.99 -0.23 -12.41 16 12 C 0.16 2.94 2.47 -67.90 -0.17 2.77 16 13 H 0.08 1.51 7.58 -51.93 -0.39 1.12 16 14 C -0.15 -2.99 5.77 -26.61 -0.15 -3.15 16 15 C 0.17 3.96 5.05 -3.71 -0.02 3.94 16 16 N -0.59 -13.87 2.99 -172.32 -0.52 -14.38 16 17 C -0.26 -6.80 9.58 -15.06 -0.14 -6.94 16 18 H 0.07 1.71 7.88 -52.49 -0.41 1.29 16 19 C 0.01 0.16 4.92 -17.43 -0.09 0.08 16 20 N -0.90 -25.40 11.20 55.49 0.62 -24.78 16 21 Si 0.90 21.08 29.59 -169.99 -5.03 16.05 16 22 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 23 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 24 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 25 C 0.12 2.26 5.84 -3.71 -0.02 2.24 16 26 C 0.08 1.27 3.36 -26.61 -0.09 1.18 16 27 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 28 O -0.57 -8.54 13.21 -35.23 -0.47 -9.00 16 29 C -0.12 -1.74 10.52 -37.23 -0.39 -2.13 16 30 C -0.14 -1.90 6.15 -105.19 -0.65 -2.55 16 31 H 0.07 0.52 8.14 -51.92 -0.42 0.10 16 32 H 0.07 0.57 7.91 -51.93 -0.41 0.16 16 33 H 0.07 0.44 8.08 -51.93 -0.42 0.02 16 34 H 0.13 0.82 8.06 -52.48 -0.42 0.39 16 35 H 0.14 0.82 8.06 -52.48 -0.42 0.40 16 36 H 0.14 1.31 8.06 -52.49 -0.42 0.89 16 37 H 0.41 7.26 6.58 -40.82 -0.27 6.99 16 38 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 39 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 40 H 0.09 2.38 6.06 -51.93 -0.31 2.07 16 41 H 0.02 0.53 7.74 -51.93 -0.40 0.13 16 42 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 43 H 0.02 0.45 6.64 -51.93 -0.34 0.11 16 44 H 0.06 1.13 7.93 -51.93 -0.41 0.71 16 45 H 0.37 3.99 9.08 45.56 0.41 4.40 16 46 H 0.17 2.10 8.06 -52.49 -0.42 1.67 16 LS Contribution 379.25 15.07 5.72 5.72 Total: -1.00 -31.66 379.25 -9.07 -40.72 By element: Atomic # 1 Polarization: 16.36 SS G_CDS: -5.48 Total: 10.88 kcal Atomic # 6 Polarization: 4.11 SS G_CDS: -3.80 Total: 0.31 kcal Atomic # 7 Polarization: -51.45 SS G_CDS: -0.12 Total: -51.57 kcal Atomic # 8 Polarization: -21.76 SS G_CDS: -0.35 Total: -22.11 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.03 Total: 16.05 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -31.66 -9.07 -40.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090839576.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.157 kcal (2) G-P(sol) polarization free energy of solvation -31.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds