Wall clock time and date at job start Wed Apr 1 2020 02:35:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.36662 * 120.14719 * 2 1 4 4 C 1.38790 * 120.44462 * 179.97438 * 3 2 1 5 5 C 1.37843 * 120.74427 * 359.97438 * 4 3 2 6 6 C 1.38981 * 119.85446 * 0.02562 * 5 4 3 7 7 O 1.34716 * 133.24808 * 180.02562 * 6 5 4 8 8 C 1.34954 * 110.86357 * 179.97438 * 7 6 5 9 9 C 1.46974 * 125.12934 * 179.97438 * 8 7 6 10 10 O 1.21651 * 120.00475 * 180.02562 * 9 8 7 11 11 N 1.34780 * 119.99900 * 0.02562 * 9 8 7 12 12 C 1.46504 * 120.00103 * 179.97438 * 11 9 8 13 13 H 1.09000 * 109.45330 * 35.03522 * 12 11 9 14 14 C 1.53031 * 109.45082 * 275.06787 * 12 11 9 15 15 C 1.53197 * 109.31337 * 301.34756 * 14 12 11 16 16 N 1.46923 * 108.77587 * 305.36720 * 15 14 12 17 17 C 1.36933 * 120.63142 * 233.88375 * 16 15 14 18 18 H 1.08001 * 120.00321 * 151.59000 * 17 16 15 19 19 C 1.38815 * 119.99826 * 331.58665 * 17 16 15 20 20 N 1.31621 * 119.99984 * 343.17890 * 19 17 16 21 21 Si 1.86800 * 120.00122 * 163.17569 * 19 17 16 22 22 H 1.48504 * 109.46788 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.47041 * 119.99977 * 21 19 17 24 24 H 1.48497 * 109.47258 * 240.00106 * 21 19 17 25 25 C 1.46930 * 118.73796 * 53.60798 * 16 15 14 26 26 C 1.53033 * 109.45980 * 155.00239 * 12 11 9 27 27 H 1.09001 * 109.52989 * 178.61222 * 26 12 11 28 28 O 1.42902 * 109.50226 * 298.69410 * 26 12 11 29 29 C 1.35806 * 109.74486 * 0.23880 * 8 7 6 30 30 C 1.39663 * 120.14644 * 180.02562 * 2 1 3 31 31 H 1.09012 * 109.47013 * 90.00099 * 1 2 3 32 32 H 1.08998 * 109.47363 * 209.99967 * 1 2 3 33 33 H 1.09000 * 109.47139 * 330.00504 * 1 2 3 34 34 H 1.08005 * 119.77549 * 0.02562 * 3 2 1 35 35 H 1.08007 * 119.62768 * 180.02562 * 4 3 2 36 36 H 1.08002 * 120.06920 * 179.97438 * 5 4 3 37 37 H 0.96999 * 120.00303 * 0.02562 * 11 9 8 38 38 H 1.08998 * 109.50320 * 61.30163 * 14 12 11 39 39 H 1.09005 * 109.49738 * 181.36720 * 14 12 11 40 40 H 1.08999 * 109.58367 * 185.57511 * 15 14 12 41 41 H 1.08997 * 109.58399 * 65.15637 * 15 14 12 42 42 H 0.97002 * 120.00123 * 180.02562 * 20 19 17 43 43 H 1.08998 * 109.58579 * 66.17454 * 25 16 15 44 44 H 1.08997 * 109.58590 * 186.60574 * 25 16 15 45 45 H 0.96699 * 114.00402 * 179.83547 * 28 26 12 46 46 H 1.07998 * 126.96177 * 179.72120 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1933 1.1818 0.0000 4 6 3.5812 1.1890 0.0005 5 6 4.2920 0.0079 0.0016 6 6 3.6160 -1.2064 0.0016 7 8 4.0244 -2.4901 0.0029 8 6 2.9684 -3.3305 0.0028 9 6 3.0551 -4.7976 0.0035 10 8 2.0393 -5.4671 0.0029 11 7 4.2601 -5.4015 0.0049 12 6 4.3465 -6.8640 0.0061 13 1 3.5283 -7.2765 -0.5841 14 6 4.2484 -7.3790 1.4438 15 6 5.3794 -6.7700 2.2785 16 7 6.6609 -7.0584 1.6204 17 6 7.6766 -7.6676 2.3076 18 1 8.3958 -8.2771 1.7805 19 6 7.7819 -7.5019 3.6818 20 7 7.1358 -6.5224 4.2780 21 14 8.8407 -8.6691 4.6849 22 1 9.4572 -9.6761 3.7843 23 1 9.9092 -7.9008 5.3728 24 1 7.9978 -9.3578 5.6950 25 6 6.8298 -6.6862 0.2091 26 6 5.6825 -7.2962 -0.6023 27 1 5.7586 -8.3833 -0.5794 28 8 5.7603 -6.8411 -1.9547 29 6 1.8135 -2.6160 -0.0039 30 6 2.2083 -1.2077 -0.0005 31 1 -0.3634 0.0000 -1.0278 32 1 -0.3634 -0.8900 0.5138 33 1 -0.3633 0.8900 0.5137 34 1 1.6520 2.1164 0.0004 35 1 4.1102 2.1306 0.0009 36 1 5.3718 0.0263 0.0016 37 1 5.0700 -4.8678 0.0057 38 1 3.2869 -7.0909 1.8687 39 1 4.3370 -8.4654 1.4479 40 1 5.3741 -7.2087 3.2763 41 1 5.2402 -5.6914 2.3507 42 1 7.2097 -6.4064 5.2382 43 1 6.8089 -5.6007 0.1125 44 1 7.7816 -7.0696 -0.1585 45 1 6.5839 -7.0780 -2.4027 46 1 0.8073 -3.0082 -0.0099 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090839576.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:35:47 Heat of formation + Delta-G solvation = -54.888573 kcal Electronic energy + Delta-G solvation = -30312.714183 eV Core-core repulsion = 26168.391550 eV Total energy + Delta-G solvation = -4144.322632 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.60946 -41.26669 -39.49023 -39.06148 -36.97992 -35.76654 -34.38312 -33.63590 -32.63131 -32.10488 -30.84309 -30.10229 -27.86842 -27.25442 -25.26488 -23.91758 -23.73631 -23.60977 -22.12526 -21.67509 -20.42045 -19.63072 -18.83830 -18.20149 -18.02493 -17.56156 -17.06991 -17.00800 -16.80116 -16.19180 -16.02666 -15.81518 -15.52090 -15.24489 -14.94602 -14.73789 -14.55116 -14.43809 -14.23717 -14.08298 -13.90203 -13.60604 -13.29454 -13.22282 -13.04518 -12.78360 -12.67684 -12.56694 -12.42784 -12.17323 -12.05014 -11.95269 -11.86969 -11.58576 -11.27225 -11.23646 -11.06047 -10.55173 -10.26054 -9.67831 -9.18442 -8.73846 -7.90966 -5.38399 -0.52979 0.31040 0.75025 1.36463 1.46054 1.48775 1.58488 1.97034 2.03015 2.47969 2.64813 3.09249 3.25527 3.31533 3.52708 3.61049 3.81892 3.84219 3.95305 4.01010 4.11357 4.15325 4.20071 4.33214 4.36806 4.47540 4.50275 4.61335 4.71118 4.74470 4.81247 4.81794 4.87586 4.97015 4.98551 5.08690 5.22873 5.23589 5.29339 5.36455 5.38188 5.50584 5.58585 5.60907 5.66358 5.99037 6.31082 6.33249 6.83730 6.88446 7.09377 7.77748 8.29755 9.15587 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.013634 B = 0.002895 C = 0.002669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2053.233736 B = 9669.374678 C =10488.498736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.034 4.034 3 C -0.141 4.141 4 C -0.065 4.065 5 C -0.136 4.136 6 C 0.047 3.953 7 O -0.200 6.200 8 C -0.049 4.049 9 C 0.597 3.403 10 O -0.550 6.550 11 N -0.688 5.688 12 C 0.165 3.835 13 H 0.087 0.913 14 C -0.141 4.141 15 C 0.184 3.816 16 N -0.601 5.601 17 C -0.263 4.263 18 H 0.075 0.925 19 C -0.048 4.048 20 N -0.933 5.933 21 Si 0.968 3.032 22 H -0.263 1.263 23 H -0.294 1.294 24 H -0.293 1.293 25 C 0.117 3.883 26 C 0.096 3.904 27 H 0.080 0.920 28 O -0.572 6.572 29 C -0.105 4.105 30 C -0.165 4.165 31 H 0.086 0.914 32 H 0.064 0.936 33 H 0.093 0.907 34 H 0.167 0.833 35 H 0.174 0.826 36 H 0.145 0.855 37 H 0.407 0.593 38 H 0.061 0.939 39 H 0.079 0.921 40 H 0.056 0.944 41 H -0.004 1.004 42 H 0.249 0.751 43 H 0.017 0.983 44 H 0.073 0.927 45 H 0.396 0.604 46 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.478 14.000 -11.770 20.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.034 4.034 3 C -0.158 4.158 4 C -0.083 4.083 5 C -0.155 4.155 6 C -0.001 4.001 7 O -0.102 6.102 8 C -0.098 4.098 9 C 0.383 3.617 10 O -0.431 6.431 11 N -0.337 5.337 12 C 0.060 3.940 13 H 0.105 0.895 14 C -0.181 4.181 15 C 0.058 3.942 16 N -0.326 5.326 17 C -0.393 4.393 18 H 0.092 0.908 19 C -0.244 4.244 20 N -0.579 5.579 21 Si 0.796 3.204 22 H -0.187 1.187 23 H -0.222 1.222 24 H -0.219 1.219 25 C -0.010 4.010 26 C 0.035 3.965 27 H 0.098 0.902 28 O -0.379 6.379 29 C -0.126 4.126 30 C -0.166 4.166 31 H 0.104 0.896 32 H 0.083 0.917 33 H 0.112 0.888 34 H 0.184 0.816 35 H 0.191 0.809 36 H 0.162 0.838 37 H 0.244 0.756 38 H 0.080 0.920 39 H 0.098 0.902 40 H 0.075 0.925 41 H 0.014 0.986 42 H 0.058 0.942 43 H 0.035 0.965 44 H 0.091 0.909 45 H 0.247 0.753 46 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -10.442 13.658 -11.500 20.684 hybrid contribution 1.595 -0.723 0.911 1.975 sum -8.847 12.935 -10.588 18.912 Atomic orbital electron populations 1.20900 0.88683 1.04090 1.03672 1.19583 0.97708 0.90155 0.95949 1.21160 0.94382 0.98214 1.02073 1.21480 0.94378 0.97492 0.94908 1.20392 1.01421 0.87404 1.06258 1.20345 0.93829 0.83865 1.02085 1.84007 1.34423 1.15091 1.76721 1.21865 0.86482 0.90319 1.11138 1.16821 0.84184 0.83937 0.76714 1.90806 1.35663 1.63652 1.53002 1.45887 1.07801 1.08251 1.71748 1.20920 0.97881 0.78884 0.96274 0.89535 1.22414 0.99353 1.01488 0.94818 1.20484 0.83124 0.95133 0.95468 1.44178 1.11255 1.69893 1.07250 1.19557 1.06982 1.22145 0.90611 0.90780 1.25832 1.00837 0.98589 0.99163 1.70202 1.47454 1.30971 1.09264 0.85204 0.77860 0.78724 0.78600 1.18693 1.22159 1.21948 1.21691 0.97462 0.96598 0.85219 1.22359 0.94060 0.98387 0.81709 0.90213 1.86458 1.45078 1.81873 1.24515 1.22909 0.98922 0.90815 0.99920 1.19984 0.93024 0.93906 1.09699 0.89552 0.91744 0.88793 0.81583 0.80858 0.83754 0.75615 0.92016 0.90198 0.92520 0.98586 0.94167 0.96478 0.90888 0.75342 0.80234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.55 9.95 71.23 0.71 -0.84 16 2 C -0.03 -0.65 5.88 -19.89 -0.12 -0.77 16 3 C -0.14 -2.04 9.63 22.03 0.21 -1.83 16 4 C -0.06 -0.98 10.01 22.31 0.22 -0.75 16 5 C -0.14 -2.99 10.07 22.35 0.23 -2.76 16 6 C 0.05 1.35 7.41 23.07 0.17 1.52 16 7 O -0.20 -6.83 10.28 -13.07 -0.13 -6.96 16 8 C -0.05 -1.67 7.07 24.00 0.17 -1.50 16 9 C 0.60 22.34 7.76 86.53 0.67 23.02 16 10 O -0.55 -22.33 16.49 -4.19 -0.07 -22.40 16 11 N -0.69 -25.22 4.15 -446.12 -1.85 -27.07 16 12 C 0.16 5.91 2.47 45.01 0.11 6.02 16 13 H 0.09 3.11 7.58 -2.39 -0.02 3.09 16 14 C -0.14 -5.57 5.77 30.67 0.18 -5.40 16 15 C 0.18 8.87 5.05 86.36 0.44 9.31 16 16 N -0.60 -28.81 2.99 -699.09 -2.09 -30.90 16 17 C -0.26 -13.82 9.58 84.03 0.81 -13.02 16 18 H 0.07 3.72 7.88 -2.91 -0.02 3.70 16 19 C -0.05 -2.64 4.92 84.86 0.42 -2.23 16 20 N -0.93 -54.70 11.20 21.65 0.24 -54.45 16 21 Si 0.97 43.92 29.59 68.60 2.03 45.95 16 22 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 23 H -0.29 -13.47 7.11 99.48 0.71 -12.77 16 24 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 25 C 0.12 4.47 5.84 86.36 0.50 4.97 16 26 C 0.10 3.11 3.36 30.67 0.10 3.22 16 27 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 28 O -0.57 -16.04 13.21 -148.98 -1.97 -18.01 16 29 C -0.11 -3.09 10.52 23.79 0.25 -2.84 16 30 C -0.17 -4.40 6.15 -20.23 -0.12 -4.53 16 31 H 0.09 0.96 8.14 -2.38 -0.02 0.95 16 32 H 0.06 0.94 7.91 -2.39 -0.02 0.92 16 33 H 0.09 0.81 8.08 -2.39 -0.02 0.79 16 34 H 0.17 1.20 8.06 -2.91 -0.02 1.17 16 35 H 0.17 1.27 8.06 -2.91 -0.02 1.25 16 36 H 0.14 2.74 8.06 -2.91 -0.02 2.71 16 37 H 0.41 15.13 6.58 -92.71 -0.61 14.52 16 38 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 39 H 0.08 3.00 8.14 -2.38 -0.02 2.98 16 40 H 0.06 3.12 6.06 -2.39 -0.01 3.11 16 41 H 0.00 -0.21 7.74 -2.39 -0.02 -0.23 16 42 H 0.25 14.22 8.31 -92.71 -0.77 13.45 16 43 H 0.02 0.69 6.64 -2.39 -0.02 0.68 16 44 H 0.07 2.60 7.93 -2.39 -0.02 2.58 16 45 H 0.40 7.40 9.08 -74.06 -0.67 6.73 16 46 H 0.18 4.58 8.06 -2.91 -0.02 4.56 16 Total: -1.00 -71.14 379.25 0.85 -70.29 By element: Atomic # 1 Polarization: 32.21 SS G_CDS: -0.25 Total: 31.95 kcal Atomic # 6 Polarization: 6.67 SS G_CDS: 4.94 Total: 11.62 kcal Atomic # 7 Polarization: -108.73 SS G_CDS: -3.70 Total: -112.43 kcal Atomic # 8 Polarization: -45.20 SS G_CDS: -2.17 Total: -47.37 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Total: -71.14 0.85 -70.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090839576.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.399 kcal (2) G-P(sol) polarization free energy of solvation -71.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds