Wall clock time and date at job start Wed Apr 1 2020 02:35:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.36657 * 120.14281 * 2 1 4 4 C 1.38792 * 120.43917 * 180.02562 * 3 2 1 5 5 C 1.37836 * 120.74688 * 0.02562 * 4 3 2 6 6 C 1.38983 * 119.85473 * 0.02562 * 5 4 3 7 7 O 1.34722 * 133.25438 * 180.02562 * 6 5 4 8 8 C 1.34944 * 110.86572 * 179.97438 * 7 6 5 9 9 C 1.46983 * 125.12619 * 180.02562 * 8 7 6 10 10 O 1.21656 * 120.00016 * 180.02562 * 9 8 7 11 11 N 1.34771 * 119.99890 * 0.02668 * 9 8 7 12 12 C 1.46501 * 119.99939 * 180.02562 * 11 9 8 13 13 H 1.09003 * 109.45206 * 35.02793 * 12 11 9 14 14 C 1.53045 * 109.48356 * 275.08449 * 12 11 9 15 15 C 1.53194 * 109.33832 * 178.64710 * 14 12 11 16 16 N 1.46925 * 108.77556 * 54.61610 * 15 14 12 17 17 C 1.36939 * 120.62733 * 126.41882 * 16 15 14 18 18 H 1.07999 * 119.99732 * 207.66546 * 17 16 15 19 19 C 1.38808 * 120.00366 * 27.65892 * 17 16 15 20 20 N 1.31620 * 119.99948 * 17.36594 * 19 17 16 21 21 Si 1.86801 * 120.00142 * 197.37364 * 19 17 16 22 22 H 1.48503 * 109.47351 * 89.99858 * 21 19 17 23 23 H 1.48504 * 109.47193 * 209.99976 * 21 19 17 24 24 H 1.48504 * 109.46880 * 329.99851 * 21 19 17 25 25 C 1.46927 * 118.74262 * 306.39085 * 16 15 14 26 26 C 1.53038 * 109.46410 * 155.00050 * 12 11 9 27 27 H 1.09001 * 109.49931 * 61.39924 * 26 12 11 28 28 O 1.42901 * 109.49537 * 301.33362 * 26 12 11 29 29 C 1.35801 * 109.74804 * 0.26443 * 8 7 6 30 30 C 1.39664 * 120.14111 * 180.02562 * 2 1 3 31 31 H 1.08999 * 109.46805 * 90.00013 * 1 2 3 32 32 H 1.09003 * 109.46975 * 210.00047 * 1 2 3 33 33 H 1.09004 * 109.46932 * 330.00422 * 1 2 3 34 34 H 1.07997 * 119.77958 * 359.97438 * 3 2 1 35 35 H 1.07995 * 119.62763 * 180.02562 * 4 3 2 36 36 H 1.08003 * 120.07239 * 180.02562 * 5 4 3 37 37 H 0.96996 * 120.00196 * 359.97438 * 11 9 8 38 38 H 1.08994 * 109.49616 * 58.67741 * 14 12 11 39 39 H 1.08995 * 109.49667 * 298.61294 * 14 12 11 40 40 H 1.09008 * 109.58744 * 294.82878 * 15 14 12 41 41 H 1.09002 * 109.58660 * 174.40659 * 15 14 12 42 42 H 0.97003 * 119.99832 * 179.97438 * 20 19 17 43 43 H 1.08999 * 109.58634 * 293.82580 * 25 16 15 44 44 H 1.08991 * 109.70371 * 173.46808 * 25 16 15 45 45 H 0.96694 * 114.00500 * 180.02562 * 28 26 12 46 46 H 1.08005 * 126.96440 * 179.69720 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1933 1.1818 0.0000 4 6 3.5812 1.1890 -0.0005 5 6 4.2920 0.0080 -0.0016 6 6 3.6160 -1.2064 -0.0027 7 8 4.0243 -2.4902 -0.0034 8 6 2.9684 -3.3304 -0.0038 9 6 3.0551 -4.7977 -0.0041 10 8 2.0393 -5.4671 -0.0050 11 7 4.2600 -5.4015 -0.0034 12 6 4.3465 -6.8639 -0.0042 13 1 3.5283 -7.2756 -0.5952 14 6 4.2477 -7.3820 1.4325 15 6 4.3045 -8.9128 1.4248 16 7 5.5172 -9.3375 0.7123 17 6 6.4080 -10.1949 1.3009 18 1 7.4508 -10.1659 1.0213 19 6 5.9709 -11.1012 2.2571 20 7 4.6894 -11.3837 2.3588 21 14 7.2013 -11.9198 3.3997 22 1 7.3698 -11.0918 4.6209 23 1 6.7041 -13.2666 3.7795 24 1 8.5082 -12.0518 2.7069 25 6 5.7557 -8.8253 -0.6440 26 6 5.6826 -7.2954 -0.6131 27 1 6.5011 -6.9043 -0.0088 28 8 5.7868 -6.7861 -1.9442 29 6 1.8135 -2.6160 -0.0093 30 6 2.2083 -1.2078 -0.0005 31 1 -0.3633 0.0000 -1.0277 32 1 -0.3633 -0.8900 0.5139 33 1 -0.3633 0.8901 0.5138 34 1 1.6520 2.1163 -0.0004 35 1 4.1102 2.1305 -0.0001 36 1 5.3718 0.0263 -0.0016 37 1 5.0700 -4.8678 -0.0031 38 1 3.3059 -7.0550 1.8731 39 1 5.0789 -6.9900 2.0185 40 1 3.4248 -9.3086 0.9171 41 1 4.3345 -9.2825 2.4498 42 1 4.3840 -12.0174 3.0268 43 1 4.9944 -9.2138 -1.3204 44 1 6.7423 -9.1372 -0.9864 45 1 6.6106 -7.0219 -2.3922 46 1 0.8072 -3.0082 -0.0155 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090839578.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:35:53 Heat of formation + Delta-G solvation = -35.906463 kcal Electronic energy + Delta-G solvation = -29614.429973 eV Core-core repulsion = 25470.930467 eV Total energy + Delta-G solvation = -4143.499506 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.71515 -39.78210 -38.45704 -37.91670 -35.43933 -34.49244 -33.62986 -32.05551 -31.82574 -30.49782 -29.67289 -28.56676 -27.19348 -25.47353 -23.89752 -22.94825 -22.41197 -21.81720 -20.93180 -20.50813 -19.65259 -18.27510 -17.42855 -17.10547 -16.65325 -16.56171 -16.26751 -15.86471 -15.26517 -14.87016 -14.53374 -14.35212 -14.07066 -13.95251 -13.89400 -13.67238 -13.41846 -13.35493 -13.18775 -12.82092 -12.62879 -12.33894 -12.15580 -12.02943 -11.98000 -11.61193 -11.29243 -11.14148 -10.90699 -10.76199 -10.39331 -10.35746 -10.28763 -10.24656 -9.95865 -9.77570 -9.53504 -8.98273 -8.85898 -8.51075 -8.37149 -6.80806 -5.87220 -3.31486 0.34313 1.03438 1.66213 2.28332 3.15871 3.17508 3.33784 3.34626 3.40432 3.41835 4.18520 4.30695 4.36887 4.49751 4.49867 4.76237 4.80203 4.94394 5.01578 5.16947 5.24544 5.28042 5.29495 5.34650 5.42544 5.44435 5.50122 5.67075 5.72563 5.83761 5.91968 5.94840 6.04710 6.05729 6.17687 6.19845 6.27508 6.43565 6.45968 6.61810 6.70231 6.73904 6.82320 7.25219 7.54607 7.58916 7.70969 7.88979 8.14863 8.35058 9.10553 9.72844 10.28413 11.21394 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.021514 B = 0.002204 C = 0.002169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.147743 B =12702.402133 C =12905.290074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.027 4.027 3 C -0.144 4.144 4 C -0.082 4.082 5 C -0.117 4.117 6 C 0.072 3.928 7 O -0.183 6.183 8 C -0.015 4.015 9 C 0.595 3.405 10 O -0.515 6.515 11 N -0.699 5.699 12 C 0.161 3.839 13 H 0.092 0.908 14 C -0.148 4.148 15 C 0.171 3.829 16 N -0.588 5.588 17 C -0.260 4.260 18 H 0.068 0.932 19 C 0.005 3.995 20 N -0.899 5.899 21 Si 0.905 3.095 22 H -0.286 1.286 23 H -0.290 1.290 24 H -0.279 1.279 25 C 0.121 3.879 26 C 0.080 3.920 27 H 0.058 0.942 28 O -0.571 6.571 29 C -0.119 4.119 30 C -0.142 4.142 31 H 0.076 0.924 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.130 0.870 35 H 0.136 0.864 36 H 0.134 0.866 37 H 0.403 0.597 38 H 0.064 0.936 39 H 0.060 0.940 40 H 0.025 0.975 41 H 0.095 0.905 42 H 0.256 0.744 43 H 0.030 0.970 44 H 0.061 0.939 45 H 0.375 0.625 46 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.005 24.926 -5.414 25.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.027 4.027 3 C -0.162 4.162 4 C -0.100 4.100 5 C -0.135 4.135 6 C 0.024 3.976 7 O -0.085 6.085 8 C -0.065 4.065 9 C 0.379 3.621 10 O -0.393 6.393 11 N -0.347 5.347 12 C 0.058 3.942 13 H 0.110 0.890 14 C -0.188 4.188 15 C 0.045 3.955 16 N -0.312 5.312 17 C -0.389 4.389 18 H 0.085 0.915 19 C -0.194 4.194 20 N -0.542 5.542 21 Si 0.735 3.265 22 H -0.213 1.213 23 H -0.217 1.217 24 H -0.204 1.204 25 C -0.006 4.006 26 C 0.019 3.981 27 H 0.076 0.924 28 O -0.376 6.376 29 C -0.140 4.140 30 C -0.143 4.143 31 H 0.094 0.906 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.148 0.852 35 H 0.154 0.846 36 H 0.152 0.848 37 H 0.237 0.763 38 H 0.082 0.918 39 H 0.079 0.921 40 H 0.043 0.957 41 H 0.113 0.887 42 H 0.066 0.934 43 H 0.048 0.952 44 H 0.080 0.920 45 H 0.221 0.779 46 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -4.101 24.412 -5.164 25.287 hybrid contribution 1.501 -0.381 0.491 1.625 sum -2.600 24.031 -4.673 24.619 Atomic orbital electron populations 1.20840 0.90534 1.03290 1.02843 1.19174 0.96223 0.90681 0.96601 1.20673 0.94187 0.97465 1.03920 1.20957 0.94027 0.97051 0.97933 1.19975 1.00374 0.87570 1.05598 1.19750 0.92752 0.83889 1.01256 1.84038 1.34256 1.14102 1.76078 1.22198 0.85551 0.90894 1.07839 1.16659 0.84725 0.82995 0.77710 1.90899 1.35043 1.62587 1.50753 1.46048 1.07456 1.08712 1.72531 1.21150 0.97892 0.77212 0.97987 0.88995 1.22638 1.01335 1.01166 0.93690 1.20848 0.88016 0.86818 0.99828 1.44054 1.24395 1.52407 1.10350 1.19166 0.89168 1.11361 1.19221 0.91470 1.25075 0.96039 0.96853 1.01458 1.70035 1.13305 1.35451 1.35433 0.86257 0.80603 0.78510 0.81165 1.21330 1.21669 1.20392 1.21520 0.99836 0.90036 0.89240 1.22780 0.96099 0.96805 0.82446 0.92435 1.86481 1.44339 1.78198 1.28534 1.22678 0.99178 0.90053 1.02059 1.19769 0.93040 0.93522 1.07960 0.90580 0.91038 0.91053 0.85213 0.84599 0.84776 0.76279 0.91755 0.92144 0.95659 0.88709 0.93393 0.95212 0.92031 0.77861 0.81312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.82 9.95 36.01 0.36 -0.46 16 2 C -0.03 -0.25 5.88 -104.66 -0.62 -0.86 16 3 C -0.14 -1.10 9.63 -39.95 -0.38 -1.49 16 4 C -0.08 -0.60 10.01 -39.52 -0.40 -1.00 16 5 C -0.12 -1.08 10.07 -39.45 -0.40 -1.48 16 6 C 0.07 0.87 7.41 -38.35 -0.28 0.59 16 7 O -0.18 -2.48 10.28 2.76 0.03 -2.45 16 8 C -0.01 -0.21 7.07 -36.91 -0.26 -0.48 16 9 C 0.59 9.87 7.76 -12.72 -0.10 9.77 16 10 O -0.52 -10.00 16.49 5.23 0.09 -9.92 16 11 N -0.70 -11.07 4.92 -54.98 -0.27 -11.34 16 12 C 0.16 2.91 2.12 -67.89 -0.14 2.76 16 13 H 0.09 1.87 7.58 -51.93 -0.39 1.48 16 14 C -0.15 -2.90 5.65 -26.61 -0.15 -3.05 16 15 C 0.17 4.05 5.31 -3.71 -0.02 4.03 16 16 N -0.59 -14.25 2.99 -172.32 -0.52 -14.77 16 17 C -0.26 -6.88 9.59 -15.06 -0.14 -7.03 16 18 H 0.07 1.73 7.89 -52.49 -0.41 1.32 16 19 C 0.01 0.14 4.91 -17.43 -0.09 0.05 16 20 N -0.90 -25.65 11.19 55.49 0.62 -25.03 16 21 Si 0.90 21.19 29.59 -169.99 -5.03 16.16 16 22 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 23 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 24 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 25 C 0.12 2.44 6.14 -3.71 -0.02 2.41 16 26 C 0.08 1.35 3.14 -26.61 -0.08 1.27 16 27 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 28 O -0.57 -8.58 13.16 -35.23 -0.46 -9.04 16 29 C -0.12 -1.54 10.52 -37.24 -0.39 -1.93 16 30 C -0.14 -1.68 6.15 -105.19 -0.65 -2.32 16 31 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.07 0.51 7.92 -51.93 -0.41 0.10 16 33 H 0.07 0.37 8.08 -51.93 -0.42 -0.05 16 34 H 0.13 0.66 8.06 -52.49 -0.42 0.23 16 35 H 0.14 0.59 8.06 -52.49 -0.42 0.17 16 36 H 0.13 0.97 8.06 -52.48 -0.42 0.55 16 37 H 0.40 5.61 8.32 -40.82 -0.34 5.27 16 38 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 39 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 40 H 0.03 0.64 8.14 -51.92 -0.42 0.22 16 41 H 0.09 2.49 6.04 -51.93 -0.31 2.18 16 42 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 43 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.06 1.16 7.94 -51.93 -0.41 0.75 16 45 H 0.37 4.02 9.08 45.56 0.41 4.43 16 46 H 0.17 1.95 8.06 -52.48 -0.42 1.52 16 LS Contribution 383.46 15.07 5.78 5.78 Total: -1.00 -32.14 383.46 -9.18 -41.33 By element: Atomic # 1 Polarization: 14.13 SS G_CDS: -5.65 Total: 8.48 kcal Atomic # 6 Polarization: 4.56 SS G_CDS: -3.77 Total: 0.80 kcal Atomic # 7 Polarization: -50.97 SS G_CDS: -0.17 Total: -51.14 kcal Atomic # 8 Polarization: -21.06 SS G_CDS: -0.35 Total: -21.41 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.03 Total: 16.16 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -32.14 -9.18 -41.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090839578.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.421 kcal (2) G-P(sol) polarization free energy of solvation -32.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds