Wall clock time and date at job start Wed Apr 1 2020 02:35:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.36657 * 120.14281 * 2 1 4 4 C 1.38792 * 120.43917 * 180.02562 * 3 2 1 5 5 C 1.37836 * 120.74688 * 0.02562 * 4 3 2 6 6 C 1.38983 * 119.85473 * 0.02562 * 5 4 3 7 7 O 1.34722 * 133.25438 * 180.02562 * 6 5 4 8 8 C 1.34944 * 110.86572 * 179.97438 * 7 6 5 9 9 C 1.46983 * 125.12619 * 180.02562 * 8 7 6 10 10 O 1.21656 * 120.00016 * 180.02562 * 9 8 7 11 11 N 1.34771 * 119.99890 * 0.02668 * 9 8 7 12 12 C 1.46501 * 119.99939 * 180.02562 * 11 9 8 13 13 H 1.09003 * 109.45206 * 35.02793 * 12 11 9 14 14 C 1.53045 * 109.48356 * 275.08449 * 12 11 9 15 15 C 1.53194 * 109.33832 * 178.64710 * 14 12 11 16 16 N 1.46925 * 108.77556 * 54.61610 * 15 14 12 17 17 C 1.36939 * 120.62733 * 126.41882 * 16 15 14 18 18 H 1.07999 * 119.99732 * 207.66546 * 17 16 15 19 19 C 1.38808 * 120.00366 * 27.65892 * 17 16 15 20 20 N 1.31620 * 119.99948 * 17.36594 * 19 17 16 21 21 Si 1.86801 * 120.00142 * 197.37364 * 19 17 16 22 22 H 1.48503 * 109.47351 * 89.99858 * 21 19 17 23 23 H 1.48504 * 109.47193 * 209.99976 * 21 19 17 24 24 H 1.48504 * 109.46880 * 329.99851 * 21 19 17 25 25 C 1.46927 * 118.74262 * 306.39085 * 16 15 14 26 26 C 1.53038 * 109.46410 * 155.00050 * 12 11 9 27 27 H 1.09001 * 109.49931 * 61.39924 * 26 12 11 28 28 O 1.42901 * 109.49537 * 301.33362 * 26 12 11 29 29 C 1.35801 * 109.74804 * 0.26443 * 8 7 6 30 30 C 1.39664 * 120.14111 * 180.02562 * 2 1 3 31 31 H 1.08999 * 109.46805 * 90.00013 * 1 2 3 32 32 H 1.09003 * 109.46975 * 210.00047 * 1 2 3 33 33 H 1.09004 * 109.46932 * 330.00422 * 1 2 3 34 34 H 1.07997 * 119.77958 * 359.97438 * 3 2 1 35 35 H 1.07995 * 119.62763 * 180.02562 * 4 3 2 36 36 H 1.08003 * 120.07239 * 180.02562 * 5 4 3 37 37 H 0.96996 * 120.00196 * 359.97438 * 11 9 8 38 38 H 1.08994 * 109.49616 * 58.67741 * 14 12 11 39 39 H 1.08995 * 109.49667 * 298.61294 * 14 12 11 40 40 H 1.09008 * 109.58744 * 294.82878 * 15 14 12 41 41 H 1.09002 * 109.58660 * 174.40659 * 15 14 12 42 42 H 0.97003 * 119.99832 * 179.97438 * 20 19 17 43 43 H 1.08999 * 109.58634 * 293.82580 * 25 16 15 44 44 H 1.08991 * 109.70371 * 173.46808 * 25 16 15 45 45 H 0.96694 * 114.00500 * 180.02562 * 28 26 12 46 46 H 1.08005 * 126.96440 * 179.69720 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1933 1.1818 0.0000 4 6 3.5812 1.1890 -0.0005 5 6 4.2920 0.0080 -0.0016 6 6 3.6160 -1.2064 -0.0027 7 8 4.0243 -2.4902 -0.0034 8 6 2.9684 -3.3304 -0.0038 9 6 3.0551 -4.7977 -0.0041 10 8 2.0393 -5.4671 -0.0050 11 7 4.2600 -5.4015 -0.0034 12 6 4.3465 -6.8639 -0.0042 13 1 3.5283 -7.2756 -0.5952 14 6 4.2477 -7.3820 1.4325 15 6 4.3045 -8.9128 1.4248 16 7 5.5172 -9.3375 0.7123 17 6 6.4080 -10.1949 1.3009 18 1 7.4508 -10.1659 1.0213 19 6 5.9709 -11.1012 2.2571 20 7 4.6894 -11.3837 2.3588 21 14 7.2013 -11.9198 3.3997 22 1 7.3698 -11.0918 4.6209 23 1 6.7041 -13.2666 3.7795 24 1 8.5082 -12.0518 2.7069 25 6 5.7557 -8.8253 -0.6440 26 6 5.6826 -7.2954 -0.6131 27 1 6.5011 -6.9043 -0.0088 28 8 5.7868 -6.7861 -1.9442 29 6 1.8135 -2.6160 -0.0093 30 6 2.2083 -1.2078 -0.0005 31 1 -0.3633 0.0000 -1.0277 32 1 -0.3633 -0.8900 0.5139 33 1 -0.3633 0.8901 0.5138 34 1 1.6520 2.1163 -0.0004 35 1 4.1102 2.1305 -0.0001 36 1 5.3718 0.0263 -0.0016 37 1 5.0700 -4.8678 -0.0031 38 1 3.3059 -7.0550 1.8731 39 1 5.0789 -6.9900 2.0185 40 1 3.4248 -9.3086 0.9171 41 1 4.3345 -9.2825 2.4498 42 1 4.3840 -12.0174 3.0268 43 1 4.9944 -9.2138 -1.3204 44 1 6.7423 -9.1372 -0.9864 45 1 6.6106 -7.0219 -2.3922 46 1 0.8072 -3.0082 -0.0155 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090839578.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:35:53 Heat of formation + Delta-G solvation = -58.199823 kcal Electronic energy + Delta-G solvation = -29615.396686 eV Core-core repulsion = 25470.930467 eV Total energy + Delta-G solvation = -4144.466219 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.61032 -41.14977 -39.52754 -39.07013 -37.01348 -35.96151 -34.38364 -33.86218 -32.63417 -32.02206 -30.85234 -30.10741 -27.91018 -27.13066 -25.18406 -23.99160 -23.73102 -23.38215 -21.83384 -21.66671 -21.23109 -19.51183 -18.78346 -18.25594 -18.05242 -17.57773 -17.47154 -16.91545 -16.81027 -16.18350 -15.87507 -15.72054 -15.54095 -15.11235 -14.99389 -14.72233 -14.58508 -14.47266 -14.25058 -14.08022 -13.92461 -13.68431 -13.31237 -13.22940 -12.99912 -12.74763 -12.67682 -12.57179 -12.44020 -12.15688 -12.07975 -11.94808 -11.92016 -11.68861 -11.29696 -11.24418 -11.08677 -10.60488 -10.25864 -9.67586 -9.18446 -8.78970 -7.91424 -5.38781 -0.53747 0.31564 0.74533 1.30684 1.48094 1.49710 1.58388 1.95195 1.96316 2.48313 2.65468 3.06270 3.24204 3.31816 3.52333 3.59207 3.79951 3.83551 3.94873 3.99711 4.11814 4.15912 4.17110 4.34856 4.37357 4.47939 4.50583 4.60505 4.70519 4.74802 4.79467 4.79752 4.86702 4.96175 4.97391 5.09363 5.22103 5.22661 5.25700 5.35192 5.37283 5.51110 5.56706 5.59155 5.64582 5.98584 6.31547 6.32838 6.83920 6.88832 7.08210 7.76330 8.28913 9.16041 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.021514 B = 0.002204 C = 0.002169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.147743 B =12702.402133 C =12905.290074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.036 4.036 3 C -0.141 4.141 4 C -0.066 4.066 5 C -0.131 4.131 6 C 0.050 3.950 7 O -0.192 6.192 8 C -0.043 4.043 9 C 0.596 3.404 10 O -0.553 6.553 11 N -0.690 5.690 12 C 0.168 3.832 13 H 0.065 0.935 14 C -0.131 4.131 15 C 0.180 3.820 16 N -0.604 5.604 17 C -0.265 4.265 18 H 0.077 0.923 19 C -0.051 4.051 20 N -0.936 5.936 21 Si 0.971 3.029 22 H -0.285 1.285 23 H -0.298 1.298 24 H -0.264 1.264 25 C 0.119 3.881 26 C 0.102 3.898 27 H 0.073 0.927 28 O -0.572 6.572 29 C -0.109 4.109 30 C -0.167 4.167 31 H 0.083 0.917 32 H 0.062 0.938 33 H 0.093 0.907 34 H 0.163 0.837 35 H 0.175 0.825 36 H 0.152 0.848 37 H 0.415 0.585 38 H 0.060 0.940 39 H 0.069 0.931 40 H -0.004 1.004 41 H 0.065 0.935 42 H 0.251 0.749 43 H 0.015 0.985 44 H 0.078 0.922 45 H 0.397 0.603 46 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.478 28.726 -5.857 29.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.036 4.036 3 C -0.159 4.159 4 C -0.083 4.083 5 C -0.149 4.149 6 C 0.003 3.997 7 O -0.094 6.094 8 C -0.093 4.093 9 C 0.383 3.617 10 O -0.434 6.434 11 N -0.338 5.338 12 C 0.064 3.936 13 H 0.083 0.917 14 C -0.171 4.171 15 C 0.053 3.947 16 N -0.328 5.328 17 C -0.394 4.394 18 H 0.095 0.905 19 C -0.247 4.247 20 N -0.581 5.581 21 Si 0.799 3.201 22 H -0.212 1.212 23 H -0.225 1.225 24 H -0.189 1.189 25 C -0.008 4.008 26 C 0.040 3.960 27 H 0.091 0.909 28 O -0.379 6.379 29 C -0.129 4.129 30 C -0.168 4.168 31 H 0.102 0.898 32 H 0.081 0.919 33 H 0.112 0.888 34 H 0.181 0.819 35 H 0.192 0.808 36 H 0.170 0.830 37 H 0.251 0.749 38 H 0.079 0.921 39 H 0.088 0.912 40 H 0.014 0.986 41 H 0.083 0.917 42 H 0.060 0.940 43 H 0.033 0.967 44 H 0.096 0.904 45 H 0.247 0.753 46 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -2.520 28.255 -5.646 28.923 hybrid contribution 0.982 -1.357 0.531 1.758 sum -1.538 26.897 -5.115 27.423 Atomic orbital electron populations 1.20904 0.89093 1.04013 1.03532 1.19558 0.97514 0.90369 0.96144 1.21148 0.94626 0.98049 1.02051 1.21492 0.94178 0.97775 0.94876 1.20390 1.01586 0.87012 1.05893 1.20305 0.93468 0.83941 1.02035 1.83971 1.33885 1.14797 1.76776 1.21668 0.86479 0.89885 1.11227 1.16886 0.84187 0.83995 0.76657 1.90868 1.36127 1.63869 1.52501 1.45809 1.07978 1.07640 1.72389 1.20825 0.97878 0.78533 0.96408 0.91656 1.22360 1.01509 0.98057 0.95187 1.20563 0.87109 0.89305 0.97678 1.44265 1.23979 1.52502 1.12086 1.19563 0.89946 1.10965 1.18974 0.90508 1.25881 0.97588 0.98007 1.03182 1.70201 1.15252 1.36490 1.36190 0.85215 0.78896 0.76884 0.79119 1.21166 1.22487 1.18864 1.21675 1.00130 0.92104 0.86861 1.22324 0.95598 0.94280 0.83760 0.90870 1.86457 1.46227 1.77726 1.27501 1.22916 0.99014 0.91103 0.99903 1.19963 0.93401 0.93628 1.09766 0.89824 0.91863 0.88842 0.81911 0.80813 0.83042 0.74879 0.92105 0.91200 0.98622 0.91667 0.93991 0.96704 0.90383 0.75252 0.80866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.39 9.95 71.24 0.71 -0.68 16 2 C -0.04 -0.58 5.88 -19.89 -0.12 -0.70 16 3 C -0.14 -1.60 9.63 22.03 0.21 -1.38 16 4 C -0.07 -0.70 10.01 22.31 0.22 -0.47 16 5 C -0.13 -2.08 10.07 22.35 0.23 -1.86 16 6 C 0.05 1.17 7.41 23.07 0.17 1.35 16 7 O -0.19 -5.20 10.28 -13.03 -0.13 -5.33 16 8 C -0.04 -1.27 7.07 24.00 0.17 -1.10 16 9 C 0.60 20.47 7.76 86.54 0.67 21.14 16 10 O -0.55 -22.59 16.49 -4.21 -0.07 -22.66 16 11 N -0.69 -21.99 4.92 -446.09 -2.19 -24.18 16 12 C 0.17 6.17 2.12 45.02 0.10 6.26 16 13 H 0.07 2.78 7.58 -2.39 -0.02 2.76 16 14 C -0.13 -5.28 5.65 30.67 0.17 -5.11 16 15 C 0.18 8.93 5.31 86.36 0.46 9.39 16 16 N -0.60 -29.77 2.99 -699.10 -2.09 -31.87 16 17 C -0.26 -14.07 9.59 84.03 0.81 -13.27 16 18 H 0.08 3.87 7.89 -2.91 -0.02 3.85 16 19 C -0.05 -2.80 4.91 84.86 0.42 -2.39 16 20 N -0.94 -55.43 11.19 21.65 0.24 -55.19 16 21 Si 0.97 44.03 29.59 68.60 2.03 46.06 16 22 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 23 H -0.30 -13.77 7.11 99.48 0.71 -13.06 16 24 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 25 C 0.12 4.75 6.14 86.36 0.53 5.28 16 26 C 0.10 3.34 3.14 30.67 0.10 3.44 16 27 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 28 O -0.57 -16.11 13.16 -148.98 -1.96 -18.07 16 29 C -0.11 -2.87 10.52 23.79 0.25 -2.62 16 30 C -0.17 -3.81 6.15 -20.23 -0.12 -3.94 16 31 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.06 0.84 7.92 -2.39 -0.02 0.82 16 33 H 0.09 0.66 8.08 -2.39 -0.02 0.64 16 34 H 0.16 0.77 8.06 -2.91 -0.02 0.75 16 35 H 0.17 0.53 8.06 -2.91 -0.02 0.51 16 36 H 0.15 1.78 8.06 -2.91 -0.02 1.76 16 37 H 0.41 11.27 8.32 -92.71 -0.77 10.50 16 38 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 39 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 40 H 0.00 -0.24 8.14 -2.38 -0.02 -0.26 16 41 H 0.06 3.62 6.04 -2.39 -0.01 3.60 16 42 H 0.25 14.43 8.31 -92.71 -0.77 13.66 16 43 H 0.01 0.64 8.14 -2.39 -0.02 0.62 16 44 H 0.08 2.83 7.94 -2.39 -0.02 2.81 16 45 H 0.40 7.39 9.08 -74.06 -0.67 6.72 16 46 H 0.17 4.18 8.06 -2.91 -0.02 4.15 16 Total: -1.00 -72.84 383.46 0.37 -72.47 By element: Atomic # 1 Polarization: 25.85 SS G_CDS: -0.42 Total: 25.44 kcal Atomic # 6 Polarization: 8.37 SS G_CDS: 4.97 Total: 13.34 kcal Atomic # 7 Polarization: -107.19 SS G_CDS: -4.04 Total: -111.24 kcal Atomic # 8 Polarization: -43.90 SS G_CDS: -2.16 Total: -46.06 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Total: -72.84 0.37 -72.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090839578.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.266 kcal (2) G-P(sol) polarization free energy of solvation -72.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds