Wall clock time and date at job start Wed Apr 1 2020 02:09:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86798 * 119.99862 * 2 1 4 4 H 1.48496 * 109.47381 * 240.00211 * 3 2 1 5 5 H 1.48509 * 109.47098 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47230 * 119.99985 * 3 2 1 7 7 C 1.38809 * 120.00260 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00154 * 180.02562 * 7 2 1 9 9 N 1.36937 * 119.99962 * 359.97438 * 7 2 1 10 10 C 1.47576 * 134.49552 * 180.02562 * 9 7 2 11 11 C 1.53938 * 86.12146 * 155.35477 * 10 9 7 12 12 N 1.46496 * 113.74563 * 137.95428 * 11 10 9 13 13 C 1.35322 * 125.86541 * 277.22374 * 12 11 10 14 14 C 1.35350 * 106.17451 * 180.18503 * 13 12 11 15 15 C 1.50697 * 126.75126 * 179.85419 * 14 13 12 16 16 N 1.46491 * 109.47394 * 94.70805 * 15 14 13 17 17 C 1.34773 * 120.00039 * 179.97438 * 16 15 14 18 18 O 1.21562 * 120.00335 * 0.02562 * 17 16 15 19 19 C 1.47740 * 120.00212 * 179.97438 * 17 16 15 20 20 N 1.33018 * 120.15753 * 5.57177 * 19 17 16 21 21 C 1.31736 * 120.00663 * 180.02562 * 20 19 17 22 22 C 1.38796 * 120.34147 * 0.02562 * 21 20 19 23 23 N 1.32031 * 120.32933 * 359.97438 * 22 21 20 24 24 C 1.32826 * 119.98091 * 0.02562 * 23 22 21 25 25 N 1.38277 * 120.16702 * 179.97438 * 24 23 22 26 26 N 1.33776 * 106.49542 * 359.58722 * 14 13 12 27 27 N 1.28638 * 108.88752 * 0.26643 * 26 14 13 28 28 C 1.47821 * 134.45567 * 359.86436 * 9 7 2 29 29 H 0.97001 * 120.00621 * 359.97438 * 1 2 3 30 30 H 1.09010 * 113.77096 * 41.05197 * 10 9 7 31 31 H 1.09002 * 113.87227 * 269.67056 * 10 9 7 32 32 H 1.09010 * 113.74192 * 269.15580 * 11 10 9 33 33 H 1.07998 * 126.91306 * 0.02673 * 13 12 11 34 34 H 1.09000 * 109.46890 * 334.70336 * 15 14 13 35 35 H 1.09003 * 109.46613 * 214.71010 * 15 14 13 36 36 H 0.97003 * 120.00413 * 0.02562 * 16 15 14 37 37 H 1.08002 * 119.82436 * 180.28983 * 21 20 19 38 38 H 1.07996 * 119.83346 * 179.97438 * 22 21 20 39 39 H 0.97000 * 119.99858 * 354.61015 * 25 24 23 40 40 H 0.96996 * 119.99734 * 174.61511 * 25 24 23 41 41 H 1.08990 * 113.76505 * 90.38531 * 28 9 7 42 42 H 1.09000 * 113.83556 * 318.92483 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2850 2.7465 0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 1.7202 -3.8101 -0.0005 11 6 0.3472 -4.0829 0.6399 12 7 -0.3332 -5.2613 0.0972 13 6 -1.0710 -5.2988 -1.0366 14 6 -1.5126 -6.5726 -1.1572 15 6 -2.3805 -7.1256 -2.2580 16 7 -1.5344 -7.7282 -3.2909 17 6 -2.0965 -8.2904 -4.3791 18 8 -3.3057 -8.2971 -4.5038 19 6 -1.2432 -8.8976 -5.4212 20 7 0.0710 -8.9906 -5.2382 21 6 0.8292 -9.5321 -6.1696 22 6 0.2642 -10.0075 -7.3448 23 7 -1.0388 -9.9220 -7.5404 24 6 -1.8153 -9.3784 -6.6100 25 7 -3.1803 -9.2864 -6.8110 26 7 -1.0221 -7.2453 -0.1101 27 7 -0.3278 -6.4401 0.6141 28 6 -0.1057 -2.7571 0.0024 29 1 -0.4851 0.8400 0.0004 30 1 2.5626 -4.0323 0.6546 31 1 1.8326 -4.2367 -0.9973 32 1 0.3597 -4.0639 1.7298 33 1 -1.2699 -4.4770 -1.7085 34 1 -2.9699 -6.3198 -2.6955 35 1 -3.0485 -7.8831 -1.8480 36 1 -0.5695 -7.7232 -3.1914 37 1 1.8953 -9.6103 -6.0159 38 1 0.8935 -10.4495 -8.1030 39 1 -3.5637 -9.5468 -7.6631 40 1 -3.7544 -8.9614 -6.1000 41 1 -0.5318 -2.8718 -0.9942 42 1 -0.7183 -2.1402 0.6599 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001094279670.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:09:21 Heat of formation + Delta-G solvation = 185.092022 kcal Electronic energy + Delta-G solvation = -28453.987221 eV Core-core repulsion = 24281.116087 eV Total energy + Delta-G solvation = -4172.871134 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.145 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.08753 -41.54734 -39.49380 -38.37642 -36.16772 -35.06445 -34.01550 -33.41450 -32.01441 -31.37399 -30.07438 -27.99193 -27.16401 -25.50774 -25.19002 -24.39618 -23.84501 -21.96017 -21.42977 -21.05956 -19.64561 -18.81603 -18.30741 -17.88506 -17.32551 -16.74354 -16.50950 -15.96603 -15.93779 -15.41787 -15.29529 -15.12252 -14.92168 -14.58254 -14.31158 -14.10109 -13.72746 -13.41836 -13.13426 -12.93210 -12.25203 -12.14635 -12.11647 -11.94485 -11.85842 -11.40671 -11.19337 -10.99092 -10.95322 -10.93592 -10.64813 -10.53288 -10.27482 -9.90124 -9.59322 -9.51199 -9.35016 -9.12485 -9.06222 -8.39626 -7.27446 -6.05982 -3.41402 0.21467 0.95755 1.79109 2.35892 2.46151 2.62803 2.97518 3.25950 3.27721 3.30727 3.31582 3.54671 3.83997 3.98858 4.20857 4.27693 4.32987 4.69572 4.72962 4.76544 4.87010 4.92391 4.96063 5.11804 5.19151 5.38961 5.44904 5.57010 5.71163 5.87887 6.04009 6.08305 6.10170 6.13528 6.28069 6.52231 6.65367 6.77970 6.89152 7.01478 7.11441 7.14658 7.30213 7.66152 7.67379 7.94697 8.72080 8.74163 9.40456 10.17900 11.11225 Molecular weight = 344.14amu Principal moments of inertia in cm(-1) A = 0.013745 B = 0.002159 C = 0.002040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2036.663709 B =12965.575350 C =13723.014739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.001 4.001 3 Si 0.920 3.080 4 H -0.282 1.282 5 H -0.288 1.288 6 H -0.281 1.281 7 C -0.233 4.233 8 H 0.087 0.913 9 N -0.599 5.599 10 C 0.120 3.880 11 C 0.077 3.923 12 N -0.264 5.264 13 C -0.013 4.013 14 C -0.065 4.065 15 C 0.213 3.787 16 N -0.696 5.696 17 C 0.590 3.410 18 O -0.549 6.549 19 C -0.053 4.053 20 N -0.369 5.369 21 C -0.024 4.024 22 C 0.139 3.861 23 N -0.512 5.512 24 C 0.413 3.587 25 N -0.815 5.815 26 N -0.265 5.265 27 N -0.087 5.087 28 C 0.164 3.836 29 H 0.260 0.740 30 H 0.062 0.938 31 H 0.043 0.957 32 H 0.132 0.868 33 H 0.191 0.809 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.415 0.585 37 H 0.174 0.826 38 H 0.175 0.825 39 H 0.401 0.599 40 H 0.429 0.571 41 H 0.041 0.959 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.867 -17.452 -12.207 21.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.198 4.198 3 Si 0.749 3.251 4 H -0.209 1.209 5 H -0.213 1.213 6 H -0.207 1.207 7 C -0.359 4.359 8 H 0.105 0.895 9 N -0.325 5.325 10 C -0.007 4.007 11 C -0.025 4.025 12 N -0.057 5.057 13 C -0.166 4.166 14 C -0.204 4.204 15 C 0.088 3.912 16 N -0.346 5.346 17 C 0.377 3.623 18 O -0.428 6.428 19 C -0.202 4.202 20 N -0.086 5.086 21 C -0.190 4.190 22 C -0.026 4.026 23 N -0.236 5.236 24 C 0.169 3.831 25 N -0.367 5.367 26 N -0.132 5.132 27 N -0.067 5.067 28 C 0.037 3.963 29 H 0.070 0.930 30 H 0.080 0.920 31 H 0.061 0.939 32 H 0.150 0.850 33 H 0.208 0.792 34 H 0.108 0.892 35 H 0.107 0.893 36 H 0.252 0.748 37 H 0.191 0.809 38 H 0.192 0.808 39 H 0.230 0.770 40 H 0.274 0.726 41 H 0.059 0.941 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -3.311 -17.838 -10.920 21.176 hybrid contribution 0.446 1.676 -1.040 2.022 sum -2.865 -16.162 -11.961 20.310 Atomic orbital electron populations 1.69747 1.05168 1.26283 1.55341 1.24850 0.95791 0.97931 1.01276 0.86088 0.78510 0.82322 0.78183 1.20869 1.21317 1.20736 1.18954 0.90407 0.80981 1.45606 0.89536 1.45663 1.01599 0.99359 1.85900 1.22935 0.93424 0.86593 0.97795 1.25290 0.95480 0.80573 1.01147 1.47915 1.31936 1.09860 1.15978 1.23503 0.99387 1.00448 0.93305 1.21652 1.07210 0.91876 0.99631 1.19377 0.90151 0.98098 0.83525 1.45793 1.11856 1.57101 1.19880 1.17437 0.86418 0.77541 0.80943 1.90404 1.13955 1.60760 1.77660 1.21156 0.91769 1.10597 0.96641 1.68079 1.03352 1.07537 1.29631 1.23420 1.01451 1.02331 0.91801 1.23837 0.90422 0.91665 0.96685 1.68203 1.06115 1.19059 1.30222 1.19117 0.87429 0.87706 0.88843 1.43317 1.03229 1.69236 1.20950 1.75024 1.09201 1.25396 1.03567 1.78277 1.18462 0.88633 1.21284 1.22742 0.89406 0.86212 0.97936 0.93040 0.91951 0.93904 0.85009 0.79195 0.89190 0.89326 0.74842 0.80909 0.80769 0.76983 0.72561 0.94109 0.89020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.01 11.39 55.49 0.63 -24.38 16 2 C 0.00 -0.02 5.50 -17.43 -0.10 -0.12 16 3 Si 0.92 20.63 29.55 -169.99 -5.02 15.61 16 4 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 7 C -0.23 -5.97 10.70 -15.06 -0.16 -6.13 16 8 H 0.09 2.14 7.83 -52.49 -0.41 1.72 16 9 N -0.60 -13.76 3.70 -177.89 -0.66 -14.41 16 10 C 0.12 2.21 8.74 -2.97 -0.03 2.18 16 11 C 0.08 1.32 5.13 -70.16 -0.36 0.96 16 12 N -0.26 -4.29 3.54 -56.31 -0.20 -4.49 16 13 C -0.01 -0.18 10.72 -17.04 -0.18 -0.36 16 14 C -0.06 -0.91 6.62 -82.78 -0.55 -1.46 16 15 C 0.21 2.49 6.23 -5.20 -0.03 2.46 16 16 N -0.70 -8.18 5.54 -62.47 -0.35 -8.52 16 17 C 0.59 7.25 7.79 -12.38 -0.10 7.15 16 18 O -0.55 -7.18 13.65 5.31 0.07 -7.11 16 19 C -0.05 -0.61 6.77 -82.65 -0.56 -1.17 16 20 N -0.37 -3.98 9.71 -9.49 -0.09 -4.07 16 21 C -0.02 -0.19 11.21 -17.39 -0.19 -0.38 16 22 C 0.14 0.99 11.22 -17.26 -0.19 0.79 16 23 N -0.51 -4.97 10.52 -12.00 -0.13 -5.10 16 24 C 0.41 4.44 7.77 -154.87 -1.20 3.23 16 25 N -0.82 -7.37 8.93 31.32 0.28 -7.09 16 26 N -0.27 -4.41 12.41 33.29 0.41 -4.00 16 27 N -0.09 -1.52 13.17 60.35 0.79 -0.72 16 28 C 0.16 3.33 6.90 -2.84 -0.02 3.31 16 29 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 30 H 0.06 1.08 8.14 -51.92 -0.42 0.66 16 31 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.13 2.19 8.14 -51.92 -0.42 1.76 16 33 H 0.19 2.41 6.74 -52.49 -0.35 2.06 16 34 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.42 4.93 7.82 -40.82 -0.32 4.61 16 37 H 0.17 0.80 8.06 -52.49 -0.42 0.38 16 38 H 0.18 0.53 8.06 -52.49 -0.42 0.11 16 39 H 0.40 2.72 8.95 -40.82 -0.37 2.35 16 40 H 0.43 4.22 5.32 -40.96 -0.22 4.00 16 41 H 0.04 0.81 6.31 -51.93 -0.33 0.48 16 42 H 0.09 2.08 7.17 -51.93 -0.37 1.70 16 LS Contribution 364.02 15.07 5.49 5.49 Total: -1.00 -31.35 364.02 -6.90 -38.26 By element: Atomic # 1 Polarization: 14.55 SS G_CDS: -4.46 Total: 10.09 kcal Atomic # 6 Polarization: 14.14 SS G_CDS: -3.67 Total: 10.47 kcal Atomic # 7 Polarization: -73.49 SS G_CDS: 0.70 Total: -72.80 kcal Atomic # 8 Polarization: -7.18 SS G_CDS: 0.07 Total: -7.11 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.35 -6.90 -38.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094279670.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 223.351 kcal (2) G-P(sol) polarization free energy of solvation -31.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 191.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.259 kcal (6) G-S(sol) free energy of system = (1) + (5) 185.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds