Wall clock time and date at job start Wed Apr 1 2020 02:09:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86798 * 119.99862 * 2 1 4 4 H 1.48496 * 109.47381 * 240.00211 * 3 2 1 5 5 H 1.48509 * 109.47098 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47230 * 119.99985 * 3 2 1 7 7 C 1.38809 * 120.00260 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00154 * 180.02562 * 7 2 1 9 9 N 1.36937 * 119.99962 * 359.97438 * 7 2 1 10 10 C 1.47576 * 134.49552 * 180.02562 * 9 7 2 11 11 C 1.53938 * 86.12146 * 155.35477 * 10 9 7 12 12 N 1.46496 * 113.74563 * 137.95428 * 11 10 9 13 13 C 1.35322 * 125.86541 * 277.22374 * 12 11 10 14 14 C 1.35350 * 106.17451 * 180.18503 * 13 12 11 15 15 C 1.50697 * 126.75126 * 179.85419 * 14 13 12 16 16 N 1.46491 * 109.47394 * 94.70805 * 15 14 13 17 17 C 1.34773 * 120.00039 * 179.97438 * 16 15 14 18 18 O 1.21562 * 120.00335 * 0.02562 * 17 16 15 19 19 C 1.47740 * 120.00212 * 179.97438 * 17 16 15 20 20 N 1.33018 * 120.15753 * 5.57177 * 19 17 16 21 21 C 1.31736 * 120.00663 * 180.02562 * 20 19 17 22 22 C 1.38796 * 120.34147 * 0.02562 * 21 20 19 23 23 N 1.32031 * 120.32933 * 359.97438 * 22 21 20 24 24 C 1.32826 * 119.98091 * 0.02562 * 23 22 21 25 25 N 1.38277 * 120.16702 * 179.97438 * 24 23 22 26 26 N 1.33776 * 106.49542 * 359.58722 * 14 13 12 27 27 N 1.28638 * 108.88752 * 0.26643 * 26 14 13 28 28 C 1.47821 * 134.45567 * 359.86436 * 9 7 2 29 29 H 0.97001 * 120.00621 * 359.97438 * 1 2 3 30 30 H 1.09010 * 113.77096 * 41.05197 * 10 9 7 31 31 H 1.09002 * 113.87227 * 269.67056 * 10 9 7 32 32 H 1.09010 * 113.74192 * 269.15580 * 11 10 9 33 33 H 1.07998 * 126.91306 * 0.02673 * 13 12 11 34 34 H 1.09000 * 109.46890 * 334.70336 * 15 14 13 35 35 H 1.09003 * 109.46613 * 214.71010 * 15 14 13 36 36 H 0.97003 * 120.00413 * 0.02562 * 16 15 14 37 37 H 1.08002 * 119.82436 * 180.28983 * 21 20 19 38 38 H 1.07996 * 119.83346 * 179.97438 * 22 21 20 39 39 H 0.97000 * 119.99858 * 354.61015 * 25 24 23 40 40 H 0.96996 * 119.99734 * 174.61511 * 25 24 23 41 41 H 1.08990 * 113.76505 * 90.38531 * 28 9 7 42 42 H 1.09000 * 113.83556 * 318.92483 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2850 2.7465 0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 1.7202 -3.8101 -0.0005 11 6 0.3472 -4.0829 0.6399 12 7 -0.3332 -5.2613 0.0972 13 6 -1.0710 -5.2988 -1.0366 14 6 -1.5126 -6.5726 -1.1572 15 6 -2.3805 -7.1256 -2.2580 16 7 -1.5344 -7.7282 -3.2909 17 6 -2.0965 -8.2904 -4.3791 18 8 -3.3057 -8.2971 -4.5038 19 6 -1.2432 -8.8976 -5.4212 20 7 0.0710 -8.9906 -5.2382 21 6 0.8292 -9.5321 -6.1696 22 6 0.2642 -10.0075 -7.3448 23 7 -1.0388 -9.9220 -7.5404 24 6 -1.8153 -9.3784 -6.6100 25 7 -3.1803 -9.2864 -6.8110 26 7 -1.0221 -7.2453 -0.1101 27 7 -0.3278 -6.4401 0.6141 28 6 -0.1057 -2.7571 0.0024 29 1 -0.4851 0.8400 0.0004 30 1 2.5626 -4.0323 0.6546 31 1 1.8326 -4.2367 -0.9973 32 1 0.3597 -4.0639 1.7298 33 1 -1.2699 -4.4770 -1.7085 34 1 -2.9699 -6.3198 -2.6955 35 1 -3.0485 -7.8831 -1.8480 36 1 -0.5695 -7.7232 -3.1914 37 1 1.8953 -9.6103 -6.0159 38 1 0.8935 -10.4495 -8.1030 39 1 -3.5637 -9.5468 -7.6631 40 1 -3.7544 -8.9614 -6.1000 41 1 -0.5318 -2.8718 -0.9942 42 1 -0.7183 -2.1402 0.6599 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001094279670.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:09:20 Heat of formation + Delta-G solvation = 160.576446 kcal Electronic energy + Delta-G solvation = -28455.050296 eV Core-core repulsion = 24281.116087 eV Total energy + Delta-G solvation = -4173.934209 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.145 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -44.35513 -42.25985 -40.36937 -39.92556 -36.97030 -35.97894 -34.95162 -34.70435 -33.65338 -32.51228 -30.81808 -29.70758 -28.16123 -26.87485 -26.21764 -25.93590 -24.54025 -23.42552 -22.50318 -22.07993 -21.13662 -19.60767 -19.20732 -18.89619 -18.53677 -18.13988 -17.55577 -17.02719 -16.96501 -16.77395 -16.32662 -16.06065 -15.91004 -15.78771 -15.46188 -15.13106 -14.83602 -14.52113 -14.29415 -14.23739 -13.69673 -13.57012 -13.39655 -12.97567 -12.85458 -12.74958 -12.65597 -12.62859 -12.44055 -12.14633 -11.80748 -11.72139 -11.62232 -11.53277 -11.02123 -10.88152 -10.39690 -10.27530 -10.12934 -9.10798 -9.08703 -8.00582 -5.35958 -0.47898 0.28702 0.56145 1.19876 1.29388 1.49047 1.50837 1.56569 1.63164 2.14395 2.43189 2.49880 2.84129 3.07498 3.11416 3.12549 3.31274 3.33288 3.37370 3.58853 3.72877 3.91507 3.99209 4.13609 4.15486 4.24512 4.47276 4.49256 4.56297 4.59094 4.68731 4.91304 5.00313 5.04511 5.09906 5.17186 5.32624 5.36589 5.66114 5.77475 5.96505 6.21826 6.31824 6.53261 6.80548 6.94642 7.10708 7.45487 7.49063 8.34027 9.16028 Molecular weight = 344.14amu Principal moments of inertia in cm(-1) A = 0.013745 B = 0.002159 C = 0.002040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2036.663709 B =12965.575350 C =13723.014739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.056 4.056 3 Si 0.980 3.020 4 H -0.277 1.277 5 H -0.295 1.295 6 H -0.275 1.275 7 C -0.239 4.239 8 H 0.091 0.909 9 N -0.628 5.628 10 C 0.125 3.875 11 C 0.105 3.895 12 N -0.268 5.268 13 C -0.012 4.012 14 C -0.052 4.052 15 C 0.217 3.783 16 N -0.695 5.695 17 C 0.588 3.412 18 O -0.564 6.564 19 C -0.085 4.085 20 N -0.390 5.390 21 C -0.022 4.022 22 C 0.152 3.848 23 N -0.526 5.526 24 C 0.400 3.600 25 N -0.812 5.812 26 N -0.280 5.280 27 N -0.107 5.107 28 C 0.166 3.834 29 H 0.253 0.747 30 H 0.076 0.924 31 H 0.052 0.948 32 H 0.139 0.861 33 H 0.208 0.792 34 H 0.105 0.895 35 H 0.088 0.912 36 H 0.414 0.586 37 H 0.207 0.793 38 H 0.220 0.780 39 H 0.410 0.590 40 H 0.425 0.575 41 H 0.047 0.953 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.543 -18.526 -13.562 23.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.250 4.250 3 Si 0.808 3.192 4 H -0.203 1.203 5 H -0.221 1.221 6 H -0.201 1.201 7 C -0.367 4.367 8 H 0.108 0.892 9 N -0.355 5.355 10 C -0.001 4.001 11 C 0.003 3.997 12 N -0.061 5.061 13 C -0.165 4.165 14 C -0.191 4.191 15 C 0.092 3.908 16 N -0.345 5.345 17 C 0.375 3.625 18 O -0.445 6.445 19 C -0.231 4.231 20 N -0.107 5.107 21 C -0.189 4.189 22 C -0.014 4.014 23 N -0.250 5.250 24 C 0.157 3.843 25 N -0.363 5.363 26 N -0.147 5.147 27 N -0.086 5.086 28 C 0.039 3.961 29 H 0.062 0.938 30 H 0.094 0.906 31 H 0.070 0.930 32 H 0.157 0.843 33 H 0.224 0.776 34 H 0.123 0.877 35 H 0.107 0.893 36 H 0.251 0.749 37 H 0.223 0.777 38 H 0.236 0.764 39 H 0.241 0.759 40 H 0.270 0.730 41 H 0.064 0.936 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.009 -18.951 -12.271 22.666 hybrid contribution 0.107 1.843 -0.738 1.988 sum -1.903 -17.108 -13.009 21.576 Atomic orbital electron populations 1.69905 1.06320 1.26315 1.57060 1.25603 0.96583 1.00839 1.01965 0.85139 0.77211 0.78556 0.78338 1.20322 1.22078 1.20090 1.19300 0.90978 0.82253 1.44168 0.89153 1.45907 1.02914 1.00420 1.86249 1.23018 0.94496 0.84098 0.98532 1.24696 0.94303 0.79675 1.01069 1.47719 1.32428 1.09414 1.16516 1.23840 0.98746 1.01132 0.92822 1.21905 1.06430 0.91494 0.99240 1.19418 0.89737 0.98569 0.83031 1.45717 1.11706 1.57239 1.19812 1.17641 0.86440 0.77320 0.81101 1.90389 1.14550 1.61436 1.78083 1.20992 0.92266 1.12810 0.97057 1.68052 1.03248 1.08452 1.30960 1.24090 1.02731 1.00803 0.91323 1.24618 0.89853 0.89739 0.97205 1.68310 1.07288 1.19346 1.30015 1.19263 0.87977 0.88013 0.89034 1.43264 1.02911 1.68930 1.21240 1.75009 1.09544 1.25736 1.04387 1.78278 1.19442 0.88892 1.21953 1.22613 0.88201 0.87371 0.97875 0.93769 0.90563 0.93000 0.84330 0.77552 0.87683 0.89350 0.74928 0.77683 0.76385 0.75942 0.73034 0.93555 0.91710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -52.31 11.39 21.65 0.25 -52.06 16 2 C -0.06 -2.92 5.50 84.86 0.47 -2.45 16 3 Si 0.98 42.41 29.55 68.60 2.03 44.44 16 4 H -0.28 -11.64 7.11 99.48 0.71 -10.93 16 5 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 6 H -0.28 -11.50 7.11 99.48 0.71 -10.80 16 7 C -0.24 -12.20 10.70 84.03 0.90 -11.30 16 8 H 0.09 4.39 7.83 -2.91 -0.02 4.37 16 9 N -0.63 -28.56 3.70 -716.72 -2.65 -31.22 16 10 C 0.12 4.43 8.74 86.48 0.76 5.18 16 11 C 0.10 3.50 5.13 46.74 0.24 3.74 16 12 N -0.27 -8.41 3.54 -332.06 -1.18 -9.58 16 13 C -0.01 -0.33 10.72 83.49 0.89 0.56 16 14 C -0.05 -1.39 6.62 41.59 0.28 -1.12 16 15 C 0.22 4.89 6.23 85.63 0.53 5.43 16 16 N -0.70 -15.97 5.54 -469.84 -2.60 -18.57 16 17 C 0.59 14.35 7.79 86.76 0.68 15.03 16 18 O -0.56 -14.80 13.65 -3.91 -0.05 -14.86 16 19 C -0.09 -1.93 6.77 42.01 0.28 -1.65 16 20 N -0.39 -7.93 9.71 -183.93 -1.79 -9.72 16 21 C -0.02 -0.29 11.21 84.84 0.95 0.67 16 22 C 0.15 1.69 11.22 84.80 0.95 2.64 16 23 N -0.53 -9.25 10.52 -191.87 -2.02 -11.27 16 24 C 0.40 8.33 7.77 133.50 1.04 9.36 16 25 N -0.81 -14.51 8.93 -54.83 -0.49 -15.00 16 26 N -0.28 -9.08 12.41 -48.60 -0.60 -9.68 16 27 N -0.11 -3.62 13.17 37.02 0.49 -3.13 16 28 C 0.17 6.74 6.90 86.43 0.60 7.33 16 29 H 0.25 13.71 8.31 -92.71 -0.77 12.94 16 30 H 0.08 2.51 8.14 -2.38 -0.02 2.49 16 31 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.14 4.47 8.14 -2.38 -0.02 4.45 16 33 H 0.21 4.93 6.74 -2.91 -0.02 4.91 16 34 H 0.11 2.06 8.14 -2.39 -0.02 2.05 16 35 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 36 H 0.41 9.61 7.82 -92.71 -0.73 8.89 16 37 H 0.21 1.14 8.06 -2.91 -0.02 1.12 16 38 H 0.22 0.32 8.06 -2.91 -0.02 0.29 16 39 H 0.41 5.41 8.95 -92.71 -0.83 4.58 16 40 H 0.43 8.43 5.32 -94.94 -0.51 7.93 16 41 H 0.05 1.82 6.31 -2.39 -0.02 1.81 16 42 H 0.06 2.99 7.17 -2.39 -0.02 2.98 16 Total: -1.00 -67.65 364.02 -0.99 -68.64 By element: Atomic # 1 Polarization: 29.51 SS G_CDS: -0.93 Total: 28.58 kcal Atomic # 6 Polarization: 24.86 SS G_CDS: 8.56 Total: 33.42 kcal Atomic # 7 Polarization: -149.63 SS G_CDS: -10.60 Total: -160.22 kcal Atomic # 8 Polarization: -14.80 SS G_CDS: -0.05 Total: -14.86 kcal Atomic # 14 Polarization: 42.41 SS G_CDS: 2.03 Total: 44.44 kcal Total: -67.65 -0.99 -68.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094279670.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 229.219 kcal (2) G-P(sol) polarization free energy of solvation -67.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 161.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.642 kcal (6) G-S(sol) free energy of system = (1) + (5) 160.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds