Wall clock time and date at job start Wed Apr 1 2020 02:03:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86802 * 120.00051 * 2 1 4 4 H 1.48499 * 109.47222 * 240.00193 * 3 2 1 5 5 H 1.48508 * 109.46748 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47233 * 119.99739 * 3 2 1 7 7 C 1.38812 * 120.00436 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00367 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99840 * 359.97438 * 7 2 1 10 10 C 1.50237 * 130.83786 * 0.02928 * 9 7 2 11 11 H 1.09006 * 116.46004 * 359.97438 * 10 9 7 12 12 C 1.55851 * 101.05152 * 233.94412 * 10 9 7 13 13 C 1.54854 * 103.58300 * 326.98109 * 12 10 9 14 14 C 1.50237 * 130.83939 * 179.97438 * 9 7 2 15 15 H 1.08998 * 115.85839 * 359.66753 * 14 9 7 16 16 C 1.55845 * 101.05378 * 233.99243 * 14 9 7 17 17 H 1.08998 * 110.62662 * 85.55220 * 16 14 9 18 18 N 1.46500 * 110.62686 * 208.57695 * 16 14 9 19 19 C 1.34781 * 119.99568 * 270.00173 * 18 16 14 20 20 O 1.21282 * 119.99800 * 0.02562 * 19 18 16 21 21 C 1.50698 * 119.99855 * 180.02562 * 19 18 16 22 22 C 1.54898 * 129.08698 * 299.94069 * 21 19 18 23 23 C 1.57167 * 77.91186 * 180.16434 * 22 21 19 24 24 C 1.53005 * 129.24790 * 179.19238 * 23 22 21 25 25 F 1.39900 * 109.47430 * 301.28771 * 24 23 22 26 26 F 1.39908 * 109.46951 * 61.28704 * 24 23 22 27 27 F 1.39896 * 109.47126 * 181.28123 * 24 23 22 28 28 C 1.54410 * 83.73285 * 42.47590 * 23 22 21 29 29 C 1.54885 * 83.77486 * 317.35330 * 23 22 21 30 30 C 1.54861 * 103.44573 * 327.06359 * 16 14 9 31 31 H 0.96994 * 120.00345 * 359.97438 * 1 2 3 32 32 H 1.09001 * 110.62510 * 85.54577 * 12 10 9 33 33 H 1.08999 * 110.62852 * 208.41372 * 12 10 9 34 34 H 1.09003 * 110.62673 * 118.56901 * 13 12 10 35 35 H 1.08999 * 110.62635 * 241.58486 * 13 12 10 36 36 H 0.96995 * 120.00235 * 90.00929 * 18 16 14 37 37 H 1.08997 * 114.97580 * 291.95765 * 22 21 19 38 38 H 1.08994 * 114.97803 * 67.13310 * 22 21 19 39 39 H 1.09002 * 114.92755 * 205.06065 * 28 23 22 40 40 H 1.08996 * 114.99165 * 70.03458 * 28 23 22 41 41 H 1.08996 * 116.12859 * 290.12562 * 29 23 22 42 42 H 1.09011 * 113.83207 * 154.96024 * 29 23 22 43 43 H 1.09001 * 110.62719 * 241.51553 * 30 16 14 44 44 H 1.08998 * 110.62596 * 118.48807 * 30 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2850 2.7465 0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3257 -2.3881 -0.0005 10 6 -0.1499 -2.6706 -0.0006 11 1 -0.8105 -1.8035 -0.0002 12 6 -0.2741 -3.6110 1.2360 13 6 1.0651 -4.3886 1.2375 14 6 1.8188 -3.8072 -0.0016 15 1 2.9014 -3.9342 -0.0081 16 6 1.0666 -4.3840 -1.2385 17 1 1.6240 -4.1854 -2.1539 18 7 0.8329 -5.8212 -1.0764 19 6 1.7476 -6.7067 -1.5188 20 8 2.7643 -6.3137 -2.0505 21 6 1.5070 -8.1850 -1.3526 22 6 1.3000 -9.0007 -0.0521 23 6 1.1991 -10.1130 -1.1579 24 6 0.9752 -11.6183 -0.9992 25 9 1.9961 -12.1612 -0.2116 26 9 -0.2599 -11.8434 -0.3817 27 9 0.9844 -12.2265 -2.2590 28 6 2.4027 -9.3693 -1.7763 29 6 0.3512 -9.0548 -1.9063 30 6 -0.2746 -3.6098 -1.2377 31 1 -0.4850 0.8400 0.0004 32 1 -0.3813 -3.0292 2.1515 33 1 -1.1147 -4.2943 1.1159 34 1 1.6219 -4.1925 2.1538 35 1 0.8887 -5.4573 1.1155 36 1 0.0199 -6.1354 -0.6509 37 1 2.1782 -9.0750 0.5893 38 1 0.3780 -8.7821 0.4864 39 1 2.5175 -9.4964 -2.8527 40 1 3.3359 -9.4615 -1.2207 41 1 -0.6301 -8.8395 -1.4835 42 1 0.3470 -9.1794 -2.9892 43 1 -1.1135 -4.2951 -1.1165 44 1 -0.3822 -3.0272 -2.1526 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001096618907.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:03:36 Heat of formation + Delta-G solvation = -37.670381 kcal Electronic energy + Delta-G solvation = -30930.951062 eV Core-core repulsion = 26245.518326 eV Total energy + Delta-G solvation = -4685.432736 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.145 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -50.40038 -47.94535 -47.94233 -42.49845 -39.81438 -38.06155 -34.01000 -32.36330 -29.49443 -29.11692 -28.61177 -27.58371 -26.36562 -26.25405 -24.77565 -23.82474 -21.45870 -20.96888 -19.69500 -19.10254 -18.72823 -18.72665 -18.54941 -17.98136 -17.00245 -16.17828 -15.37619 -15.16168 -14.96791 -14.95688 -14.84782 -14.61787 -14.60694 -14.37147 -14.15378 -14.09639 -14.09580 -13.92016 -13.76405 -12.50142 -12.38508 -12.18450 -12.00825 -11.93841 -11.78787 -11.71857 -11.53160 -11.10359 -10.97216 -10.93940 -10.89531 -10.85185 -10.81840 -10.27154 -10.15019 -9.93293 -9.76824 -9.42276 -9.29517 -8.96665 -8.59899 -6.95662 -5.76079 -3.14183 2.23689 2.46101 3.07851 3.13209 3.18300 3.38793 3.42904 3.43569 3.46460 3.72613 3.92674 4.11564 4.25332 4.28616 4.42331 4.74954 5.06287 5.07887 5.15284 5.23529 5.34070 5.38011 5.42392 5.43504 5.49281 5.56728 5.74093 5.79301 5.91468 6.01036 6.06259 6.24176 6.27201 6.48167 6.53897 6.60322 6.75565 6.90110 6.93795 7.21879 7.48465 7.66093 7.77190 8.11642 8.35263 9.07084 9.69662 10.49374 11.33657 Molecular weight = 344.15amu Principal moments of inertia in cm(-1) A = 0.029882 B = 0.002349 C = 0.002302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.804688 B =11915.180938 C =12161.290145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.011 4.011 3 Si 0.917 3.083 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.286 1.286 7 C -0.212 4.212 8 H 0.079 0.921 9 N -0.589 5.589 10 C 0.156 3.844 11 H 0.153 0.847 12 C -0.138 4.138 13 C -0.131 4.131 14 C 0.128 3.872 15 H 0.086 0.914 16 C 0.126 3.874 17 H 0.086 0.914 18 N -0.702 5.702 19 C 0.570 3.430 20 O -0.530 6.530 21 C -0.148 4.148 22 C -0.073 4.073 23 C -0.227 4.227 24 C 0.523 3.477 25 F -0.176 7.176 26 F -0.176 7.176 27 F -0.177 7.177 28 C -0.064 4.064 29 C -0.073 4.073 30 C -0.141 4.141 31 H 0.255 0.745 32 H 0.055 0.945 33 H 0.045 0.955 34 H 0.051 0.949 35 H 0.050 0.950 36 H 0.396 0.604 37 H 0.093 0.907 38 H 0.094 0.906 39 H 0.090 0.910 40 H 0.092 0.908 41 H 0.094 0.906 42 H 0.090 0.910 43 H 0.055 0.945 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.567 -22.117 -1.207 22.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.206 4.206 3 Si 0.747 3.253 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.340 4.340 8 H 0.097 0.903 9 N -0.309 5.309 10 C 0.049 3.951 11 H 0.170 0.830 12 C -0.177 4.177 13 C -0.170 4.170 14 C 0.019 3.981 15 H 0.104 0.896 16 C 0.020 3.980 17 H 0.104 0.896 18 N -0.352 5.352 19 C 0.354 3.646 20 O -0.406 6.406 21 C -0.151 4.151 22 C -0.110 4.110 23 C -0.228 4.228 24 C 0.469 3.531 25 F -0.157 7.157 26 F -0.158 7.158 27 F -0.158 7.158 28 C -0.102 4.102 29 C -0.110 4.110 30 C -0.181 4.181 31 H 0.065 0.935 32 H 0.074 0.926 33 H 0.063 0.937 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.231 0.769 37 H 0.111 0.889 38 H 0.113 0.887 39 H 0.109 0.891 40 H 0.110 0.890 41 H 0.113 0.887 42 H 0.108 0.892 43 H 0.073 0.927 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -1.808 -21.465 -1.594 21.600 hybrid contribution 0.034 0.165 0.270 0.318 sum -1.774 -21.300 -1.324 21.415 Atomic orbital electron populations 1.69443 1.05001 1.25167 1.57542 1.24695 0.95647 0.97518 1.02750 0.86110 0.78394 0.82831 0.77923 1.21177 1.21568 1.21240 1.19015 0.90361 0.81839 1.42823 0.90330 1.46447 1.01541 0.98792 1.84104 1.23704 0.87727 0.95063 0.88598 0.83004 1.23061 0.95083 0.98199 1.01368 1.22980 0.97659 0.97441 0.98954 1.23265 0.96177 0.86146 0.92503 0.89635 1.22737 0.98341 0.76311 1.00577 0.89628 1.46144 1.22024 1.07161 1.59827 1.18328 0.83606 0.84104 0.78536 1.90740 1.27114 1.79511 1.43241 1.23778 0.99281 0.92614 0.99467 1.24491 1.03718 0.89009 0.93798 1.25352 1.03971 0.89205 1.04270 1.18418 0.73831 0.87214 0.73678 1.93204 1.59974 1.87635 1.74896 1.93205 1.43832 1.95590 1.83134 1.93202 1.96191 1.85174 1.41216 1.23691 0.95153 0.89536 1.01822 1.24019 0.96815 0.89494 1.00694 1.23307 0.93890 0.98439 1.02471 0.93488 0.92635 0.93663 0.92991 0.93105 0.76908 0.88886 0.88714 0.89112 0.88999 0.88718 0.89153 0.92678 0.91516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.68 10.48 55.49 0.58 -25.10 16 2 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 3 Si 0.92 21.70 29.55 -169.99 -5.02 16.68 16 4 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 7 C -0.21 -5.74 10.59 -15.06 -0.16 -5.90 16 8 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 9 N -0.59 -14.21 2.99 -145.59 -0.43 -14.65 16 10 C 0.16 3.36 4.68 -62.81 -0.29 3.07 16 11 H 0.15 3.79 5.58 -51.93 -0.29 3.50 16 12 C -0.14 -2.52 6.43 -24.23 -0.16 -2.67 16 13 C -0.13 -2.27 6.35 -24.01 -0.15 -2.42 16 14 C 0.13 2.57 5.36 -62.58 -0.34 2.23 16 15 H 0.09 1.79 8.14 -51.93 -0.42 1.36 16 16 C 0.13 2.21 3.14 -65.43 -0.21 2.01 16 17 H 0.09 1.71 7.58 -51.93 -0.39 1.32 16 18 N -0.70 -9.39 3.71 -51.39 -0.19 -9.58 16 19 C 0.57 7.90 7.94 -10.98 -0.09 7.81 16 20 O -0.53 -9.67 16.76 5.56 0.09 -9.58 16 21 C -0.15 -1.44 3.36 -172.27 -0.58 -2.02 16 22 C -0.07 -0.56 7.95 -24.71 -0.20 -0.76 16 23 C -0.23 -1.79 3.03 -169.86 -0.51 -2.31 16 24 C 0.52 4.48 3.63 37.16 0.13 4.62 16 25 F -0.18 -1.62 17.32 2.25 0.04 -1.59 16 26 F -0.18 -1.58 17.32 2.25 0.04 -1.54 16 27 F -0.18 -1.62 17.32 2.25 0.04 -1.58 16 28 C -0.06 -0.57 7.78 -26.71 -0.21 -0.78 16 29 C -0.07 -0.55 7.84 -25.98 -0.20 -0.75 16 30 C -0.14 -2.53 6.20 -24.25 -0.15 -2.68 16 31 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 32 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.04 0.69 7.82 -51.93 -0.41 0.28 16 34 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.05 0.73 6.39 -51.93 -0.33 0.40 16 36 H 0.40 4.24 7.91 -40.82 -0.32 3.92 16 37 H 0.09 0.71 7.91 -51.93 -0.41 0.29 16 38 H 0.09 0.60 7.97 -51.93 -0.41 0.19 16 39 H 0.09 0.78 7.94 -51.93 -0.41 0.36 16 40 H 0.09 0.80 7.91 -51.93 -0.41 0.39 16 41 H 0.09 0.58 7.97 -51.93 -0.41 0.16 16 42 H 0.09 0.65 7.93 -51.92 -0.41 0.24 16 43 H 0.05 0.81 7.39 -51.93 -0.38 0.43 16 44 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 LS Contribution 365.52 15.07 5.51 5.51 Total: -1.00 -29.93 365.52 -8.39 -38.32 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: -5.84 Total: 4.03 kcal Atomic # 6 Polarization: 2.26 SS G_CDS: -3.20 Total: -0.94 kcal Atomic # 7 Polarization: -49.28 SS G_CDS: -0.04 Total: -49.33 kcal Atomic # 8 Polarization: -9.67 SS G_CDS: 0.09 Total: -9.58 kcal Atomic # 9 Polarization: -4.82 SS G_CDS: 0.12 Total: -4.70 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -29.93 -8.39 -38.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001096618907.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.653 kcal (2) G-P(sol) polarization free energy of solvation -29.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds