Wall clock time and date at job start Wed Apr 1 2020 02:07:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31557 * 1 3 3 Si 1.86793 * 120.00011 * 2 1 4 4 H 1.48498 * 109.47409 * 269.99940 * 3 2 1 5 5 H 1.48509 * 109.47079 * 30.00178 * 3 2 1 6 6 H 1.48508 * 109.47045 * 149.99669 * 3 2 1 7 7 C 1.38652 * 119.99760 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00072 * 359.97438 * 7 2 1 9 9 O 1.34837 * 119.99838 * 180.02562 * 7 2 1 10 10 C 1.35745 * 116.99870 * 185.05513 * 9 7 2 11 11 C 1.38880 * 120.07416 * 354.46343 * 10 9 7 12 12 C 1.38096 * 119.93679 * 180.02562 * 11 10 9 13 13 C 1.38300 * 120.06623 * 0.02844 * 12 11 10 14 14 C 1.50699 * 119.93287 * 179.97438 * 13 12 11 15 15 N 1.46892 * 109.47557 * 89.99468 * 14 13 12 16 16 C 1.46896 * 111.00277 * 180.02562 * 15 14 13 17 17 C 1.53005 * 109.47628 * 180.02562 * 16 15 14 18 18 C 1.52996 * 109.47485 * 179.97438 * 17 16 15 19 19 N 1.46499 * 109.47128 * 179.97438 * 18 17 16 20 20 C 1.34770 * 120.00257 * 180.02562 * 19 18 17 21 21 O 1.21697 * 119.99713 * 359.97438 * 20 19 18 22 22 C 1.46654 * 120.00520 * 180.02562 * 20 19 18 23 23 C 1.36545 * 125.99074 * 179.97438 * 22 20 19 24 24 C 1.40363 * 106.70773 * 180.02562 * 23 22 20 25 25 C 1.35128 * 107.11705 * 359.97438 * 24 23 22 26 26 O 1.33934 * 108.76651 * 359.97438 * 25 24 23 27 27 C 1.38304 * 120.13917 * 0.24703 * 13 12 11 28 28 C 1.38099 * 120.06631 * 359.45278 * 27 13 12 29 29 H 0.96998 * 119.99817 * 0.02562 * 1 2 3 30 30 H 1.08007 * 120.03018 * 0.02562 * 11 10 9 31 31 H 1.07995 * 119.96953 * 180.02562 * 12 11 10 32 32 H 1.09008 * 109.46696 * 329.99480 * 14 13 12 33 33 H 1.09001 * 109.47156 * 209.99880 * 14 13 12 34 34 H 1.00905 * 110.99999 * 56.04708 * 15 14 13 35 35 H 1.08999 * 109.47319 * 60.00175 * 16 15 14 36 36 H 1.09006 * 109.47278 * 299.99791 * 16 15 14 37 37 H 1.09004 * 109.46946 * 59.99135 * 17 16 15 38 38 H 1.08998 * 109.46518 * 300.00320 * 17 16 15 39 39 H 1.08999 * 109.47110 * 60.00081 * 18 17 16 40 40 H 1.08994 * 109.47074 * 299.99986 * 18 17 16 41 41 H 0.97005 * 120.00185 * 0.02562 * 19 18 17 42 42 H 1.08001 * 126.64812 * 0.02562 * 23 22 20 43 43 H 1.08002 * 126.44538 * 179.97438 * 24 23 22 44 44 H 1.07998 * 125.61946 * 180.27056 * 25 24 23 45 45 H 1.08002 * 119.96841 * 179.70583 * 27 13 12 46 46 H 1.08002 * 120.03557 * 180.27475 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 2.4971 2.0464 -1.4000 5 1 1.4470 2.6526 0.7001 6 1 3.5471 1.4401 0.7001 7 6 2.0088 -1.2008 -0.0005 8 1 1.4688 -2.1361 -0.0005 9 8 3.3571 -1.2008 0.0000 10 6 3.9734 -2.4056 -0.1072 11 6 3.2235 -3.5744 -0.0952 12 6 3.8534 -4.7985 -0.2039 13 6 5.2298 -4.8613 -0.3239 14 6 5.9141 -6.1987 -0.4417 15 7 6.0190 -6.5721 -1.8585 16 6 6.6819 -7.8739 -2.0122 17 6 6.7731 -8.2277 -3.4980 18 6 7.4642 -9.5832 -3.6581 19 7 7.5509 -9.9222 -5.0807 20 6 8.1251 -11.0797 -5.4639 21 8 8.5719 -11.8431 -4.6282 22 6 8.2124 -11.4188 -6.8880 23 6 8.7662 -12.5523 -7.4105 24 6 8.6333 -12.4606 -8.8048 25 6 8.0117 -11.2903 -9.0690 26 8 7.7588 -10.6657 -7.9115 27 6 5.9799 -3.6994 -0.3304 28 6 5.3553 -2.4720 -0.2283 29 1 -0.4850 0.8400 -0.0004 30 1 2.1486 -3.5260 -0.0010 31 1 3.2707 -5.7077 -0.1951 32 1 5.3333 -6.9521 0.0906 33 1 6.9120 -6.1357 -0.0077 34 1 6.4977 -5.8576 -2.3863 35 1 6.1062 -8.6387 -1.4910 36 1 7.6852 -7.8230 -1.5891 37 1 7.3491 -7.4627 -4.0189 38 1 5.7701 -8.2785 -3.9215 39 1 6.8886 -10.3483 -3.1372 40 1 8.4672 -9.5319 -3.2347 41 1 7.1950 -9.3135 -5.7469 42 1 9.2187 -13.3624 -6.8580 43 1 8.9655 -13.1886 -9.5302 44 1 7.7561 -10.9216 -10.0514 45 1 7.0550 -3.7518 -0.4195 46 1 5.9413 -1.5648 -0.2379 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001154211500.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:07:16 Heat of formation + Delta-G solvation = -24.794462 kcal Electronic energy + Delta-G solvation = -26980.219962 eV Core-core repulsion = 22837.202308 eV Total energy + Delta-G solvation = -4143.017654 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.16951 -39.89844 -39.25079 -37.52365 -36.50185 -35.13643 -33.58583 -32.52047 -32.07678 -30.49401 -30.25949 -29.20180 -26.23548 -25.18142 -23.77909 -22.82839 -22.23869 -22.12180 -21.92260 -20.71616 -20.34688 -18.96492 -17.89939 -17.27551 -16.90942 -16.80184 -16.56896 -16.29477 -15.57815 -14.99874 -14.95082 -14.73860 -14.34763 -14.13635 -14.02769 -13.79253 -13.62960 -13.58247 -13.50938 -13.20111 -12.98704 -12.68527 -12.57841 -12.28380 -12.14563 -11.98841 -11.67902 -11.29286 -11.20568 -10.84517 -10.76014 -10.69600 -10.64459 -10.58291 -10.15985 -9.66659 -9.39896 -9.17509 -8.88685 -8.47298 -8.26671 -7.34500 -6.43070 -4.09757 0.56214 1.84825 2.11233 2.14217 2.18359 2.72114 2.73186 3.20638 3.24342 3.38762 4.04480 4.16052 4.22195 4.38688 4.48124 4.54064 4.59877 4.81351 4.84187 4.85518 5.09314 5.10407 5.15048 5.24571 5.26151 5.30170 5.36591 5.37245 5.43539 5.64106 5.70107 5.74892 5.79143 5.81401 5.82500 5.90744 6.12496 6.29390 6.32771 6.55196 6.77784 6.90791 6.96427 7.04655 7.20461 7.31268 7.37547 7.59453 7.59953 7.79078 8.02352 8.92131 9.54316 10.64526 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.019624 B = 0.001337 C = 0.001289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.466621 B =20944.664583 C =21722.199804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.064 3.936 3 Si 0.905 3.095 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.260 1.260 7 C -0.390 4.390 8 H 0.107 0.893 9 O -0.218 6.218 10 C 0.161 3.839 11 C -0.222 4.222 12 C -0.050 4.050 13 C -0.178 4.178 14 C 0.117 3.883 15 N -0.685 5.685 16 C 0.062 3.938 17 C -0.131 4.131 18 C 0.120 3.880 19 N -0.718 5.718 20 C 0.603 3.397 21 O -0.521 6.521 22 C -0.082 4.082 23 C -0.119 4.119 24 C -0.226 4.226 25 C -0.004 4.004 26 O -0.164 6.164 27 C -0.071 4.071 28 C -0.194 4.194 29 H 0.279 0.721 30 H 0.133 0.867 31 H 0.110 0.890 32 H 0.072 0.928 33 H 0.029 0.971 34 H 0.342 0.658 35 H 0.075 0.925 36 H 0.030 0.970 37 H 0.070 0.930 38 H 0.081 0.919 39 H 0.074 0.926 40 H 0.072 0.928 41 H 0.407 0.593 42 H 0.161 0.839 43 H 0.158 0.842 44 H 0.212 0.788 45 H 0.109 0.891 46 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.341 -21.839 -14.942 31.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.184 1.184 7 C -0.465 4.465 8 H 0.124 0.876 9 O -0.122 6.122 10 C 0.109 3.891 11 C -0.242 4.242 12 C -0.069 4.069 13 C -0.180 4.180 14 C -0.011 4.011 15 N -0.317 5.317 16 C -0.068 4.068 17 C -0.169 4.169 18 C -0.004 4.004 19 N -0.369 5.369 20 C 0.389 3.611 21 O -0.398 6.398 22 C -0.134 4.134 23 C -0.140 4.140 24 C -0.245 4.245 25 C -0.074 4.074 26 O -0.060 6.060 27 C -0.090 4.090 28 C -0.213 4.213 29 H 0.090 0.910 30 H 0.150 0.850 31 H 0.128 0.872 32 H 0.090 0.910 33 H 0.047 0.953 34 H 0.160 0.840 35 H 0.093 0.907 36 H 0.048 0.952 37 H 0.088 0.912 38 H 0.100 0.900 39 H 0.092 0.908 40 H 0.090 0.910 41 H 0.242 0.758 42 H 0.178 0.822 43 H 0.175 0.825 44 H 0.228 0.772 45 H 0.127 0.873 46 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 16.745 -21.980 -14.235 31.083 hybrid contribution 0.891 1.034 -0.385 1.419 sum 17.637 -20.946 -14.621 31.041 Atomic orbital electron populations 1.69647 1.05565 1.28495 1.47951 1.24465 0.95023 0.98814 0.95663 0.86184 0.80320 0.81451 0.78950 1.19890 1.20767 1.18394 1.20779 0.76871 0.96662 1.52235 0.87584 1.83570 1.22651 1.25826 1.80194 1.19142 0.91709 0.85517 0.92724 1.21293 1.01145 0.91880 1.09836 1.20631 0.93402 0.96643 0.96186 1.19179 0.93858 0.93379 1.11535 1.20633 0.97832 0.94621 0.88000 1.60523 1.56308 1.03802 1.11044 1.21816 0.97044 0.92984 0.94990 1.21771 1.01963 0.95415 0.97759 1.21414 1.01555 0.97063 0.80368 1.45905 1.60248 1.21121 1.09626 1.16536 0.78402 0.81779 0.84421 1.90901 1.48367 1.50072 1.50504 1.22078 1.08626 0.94652 0.88016 1.22015 0.99824 0.97809 0.94316 1.21902 1.06600 0.99889 0.96127 1.24473 1.00474 0.93522 0.88932 1.84069 1.63095 1.44259 1.14536 1.20480 0.98078 0.91518 0.98883 1.20163 0.91971 0.97760 1.11404 0.91041 0.84962 0.87181 0.90960 0.95254 0.84001 0.90688 0.95162 0.91180 0.89997 0.90767 0.91018 0.75757 0.82164 0.82468 0.77180 0.87321 0.86631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.26 13.96 55.48 0.77 -24.48 16 2 C 0.06 1.78 5.49 -17.52 -0.10 1.68 16 3 Si 0.91 21.54 28.62 -169.99 -4.86 16.68 16 4 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 6 H -0.26 -6.20 7.11 56.52 0.40 -5.80 16 7 C -0.39 -10.94 9.95 30.89 0.31 -10.63 16 8 H 0.11 3.04 5.44 -52.49 -0.29 2.75 16 9 O -0.22 -5.71 8.59 0.04 0.00 -5.71 16 10 C 0.16 3.68 6.65 -39.11 -0.26 3.42 16 11 C -0.22 -4.75 9.17 -39.40 -0.36 -5.11 16 12 C -0.05 -0.89 9.69 -39.61 -0.38 -1.27 16 13 C -0.18 -2.82 5.40 -104.58 -0.56 -3.39 16 14 C 0.12 1.44 5.81 -4.98 -0.03 1.41 16 15 N -0.69 -7.55 6.49 -115.06 -0.75 -8.29 16 16 C 0.06 0.52 5.69 -3.82 -0.02 0.49 16 17 C -0.13 -0.90 5.59 -26.73 -0.15 -1.05 16 18 C 0.12 0.88 5.67 -4.04 -0.02 0.86 16 19 N -0.72 -5.47 5.55 -61.63 -0.34 -5.82 16 20 C 0.60 5.97 7.79 -12.87 -0.10 5.87 16 21 O -0.52 -6.77 16.86 5.19 0.09 -6.68 16 22 C -0.08 -0.70 7.13 -36.80 -0.26 -0.97 16 23 C -0.12 -0.91 10.62 -39.39 -0.42 -1.33 16 24 C -0.23 -1.21 10.87 -39.89 -0.43 -1.64 16 25 C 0.00 -0.02 12.08 29.63 0.36 0.34 16 26 O -0.16 -1.17 10.40 4.99 0.05 -1.12 16 27 C -0.07 -1.15 9.69 -39.61 -0.38 -1.53 16 28 C -0.19 -3.75 9.99 -39.39 -0.39 -4.14 16 29 H 0.28 7.41 8.31 -40.82 -0.34 7.07 16 30 H 0.13 2.98 5.64 -52.48 -0.30 2.69 16 31 H 0.11 1.75 8.06 -52.49 -0.42 1.32 16 32 H 0.07 0.87 8.08 -51.92 -0.42 0.45 16 33 H 0.03 0.33 8.08 -51.93 -0.42 -0.09 16 34 H 0.34 3.67 8.72 -39.29 -0.34 3.32 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.03 0.24 8.14 -51.93 -0.42 -0.18 16 37 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.41 2.38 8.23 -40.82 -0.34 2.04 16 42 H 0.16 1.11 8.06 -52.49 -0.42 0.69 16 43 H 0.16 0.46 8.06 -52.49 -0.42 0.04 16 44 H 0.21 0.14 8.06 -52.49 -0.42 -0.29 16 45 H 0.11 1.43 8.06 -52.49 -0.42 1.01 16 46 H 0.12 2.09 8.06 -52.49 -0.42 1.67 16 LS Contribution 398.77 15.07 6.01 6.01 Total: -1.00 -32.46 398.77 -8.55 -41.01 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: -6.31 Total: 5.38 kcal Atomic # 6 Polarization: -13.76 SS G_CDS: -3.22 Total: -16.98 kcal Atomic # 7 Polarization: -38.28 SS G_CDS: -0.31 Total: -38.59 kcal Atomic # 8 Polarization: -13.65 SS G_CDS: 0.14 Total: -13.51 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.86 Total: 16.68 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -32.46 -8.55 -41.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154211500.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.216 kcal (2) G-P(sol) polarization free energy of solvation -32.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds