Wall clock time and date at job start Wed Apr 1 2020 02:07:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31557 * 1 3 3 Si 1.86793 * 120.00011 * 2 1 4 4 H 1.48498 * 109.47409 * 269.99940 * 3 2 1 5 5 H 1.48509 * 109.47079 * 30.00178 * 3 2 1 6 6 H 1.48508 * 109.47045 * 149.99669 * 3 2 1 7 7 C 1.38652 * 119.99760 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00072 * 359.97438 * 7 2 1 9 9 O 1.34837 * 119.99838 * 180.02562 * 7 2 1 10 10 C 1.35745 * 116.99870 * 185.05513 * 9 7 2 11 11 C 1.38880 * 120.07416 * 354.46343 * 10 9 7 12 12 C 1.38096 * 119.93679 * 180.02562 * 11 10 9 13 13 C 1.38300 * 120.06623 * 0.02844 * 12 11 10 14 14 C 1.50699 * 119.93287 * 179.97438 * 13 12 11 15 15 N 1.46892 * 109.47557 * 89.99468 * 14 13 12 16 16 C 1.46896 * 111.00277 * 180.02562 * 15 14 13 17 17 C 1.53005 * 109.47628 * 180.02562 * 16 15 14 18 18 C 1.52996 * 109.47485 * 179.97438 * 17 16 15 19 19 N 1.46499 * 109.47128 * 179.97438 * 18 17 16 20 20 C 1.34770 * 120.00257 * 180.02562 * 19 18 17 21 21 O 1.21697 * 119.99713 * 359.97438 * 20 19 18 22 22 C 1.46654 * 120.00520 * 180.02562 * 20 19 18 23 23 C 1.36545 * 125.99074 * 179.97438 * 22 20 19 24 24 C 1.40363 * 106.70773 * 180.02562 * 23 22 20 25 25 C 1.35128 * 107.11705 * 359.97438 * 24 23 22 26 26 O 1.33934 * 108.76651 * 359.97438 * 25 24 23 27 27 C 1.38304 * 120.13917 * 0.24703 * 13 12 11 28 28 C 1.38099 * 120.06631 * 359.45278 * 27 13 12 29 29 H 0.96998 * 119.99817 * 0.02562 * 1 2 3 30 30 H 1.08007 * 120.03018 * 0.02562 * 11 10 9 31 31 H 1.07995 * 119.96953 * 180.02562 * 12 11 10 32 32 H 1.09008 * 109.46696 * 329.99480 * 14 13 12 33 33 H 1.09001 * 109.47156 * 209.99880 * 14 13 12 34 34 H 1.00905 * 110.99999 * 56.04708 * 15 14 13 35 35 H 1.08999 * 109.47319 * 60.00175 * 16 15 14 36 36 H 1.09006 * 109.47278 * 299.99791 * 16 15 14 37 37 H 1.09004 * 109.46946 * 59.99135 * 17 16 15 38 38 H 1.08998 * 109.46518 * 300.00320 * 17 16 15 39 39 H 1.08999 * 109.47110 * 60.00081 * 18 17 16 40 40 H 1.08994 * 109.47074 * 299.99986 * 18 17 16 41 41 H 0.97005 * 120.00185 * 0.02562 * 19 18 17 42 42 H 1.08001 * 126.64812 * 0.02562 * 23 22 20 43 43 H 1.08002 * 126.44538 * 179.97438 * 24 23 22 44 44 H 1.07998 * 125.61946 * 180.27056 * 25 24 23 45 45 H 1.08002 * 119.96841 * 179.70583 * 27 13 12 46 46 H 1.08002 * 120.03557 * 180.27475 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 2.4971 2.0464 -1.4000 5 1 1.4470 2.6526 0.7001 6 1 3.5471 1.4401 0.7001 7 6 2.0088 -1.2008 -0.0005 8 1 1.4688 -2.1361 -0.0005 9 8 3.3571 -1.2008 0.0000 10 6 3.9734 -2.4056 -0.1072 11 6 3.2235 -3.5744 -0.0952 12 6 3.8534 -4.7985 -0.2039 13 6 5.2298 -4.8613 -0.3239 14 6 5.9141 -6.1987 -0.4417 15 7 6.0190 -6.5721 -1.8585 16 6 6.6819 -7.8739 -2.0122 17 6 6.7731 -8.2277 -3.4980 18 6 7.4642 -9.5832 -3.6581 19 7 7.5509 -9.9222 -5.0807 20 6 8.1251 -11.0797 -5.4639 21 8 8.5719 -11.8431 -4.6282 22 6 8.2124 -11.4188 -6.8880 23 6 8.7662 -12.5523 -7.4105 24 6 8.6333 -12.4606 -8.8048 25 6 8.0117 -11.2903 -9.0690 26 8 7.7588 -10.6657 -7.9115 27 6 5.9799 -3.6994 -0.3304 28 6 5.3553 -2.4720 -0.2283 29 1 -0.4850 0.8400 -0.0004 30 1 2.1486 -3.5260 -0.0010 31 1 3.2707 -5.7077 -0.1951 32 1 5.3333 -6.9521 0.0906 33 1 6.9120 -6.1357 -0.0077 34 1 6.4977 -5.8576 -2.3863 35 1 6.1062 -8.6387 -1.4910 36 1 7.6852 -7.8230 -1.5891 37 1 7.3491 -7.4627 -4.0189 38 1 5.7701 -8.2785 -3.9215 39 1 6.8886 -10.3483 -3.1372 40 1 8.4672 -9.5319 -3.2347 41 1 7.1950 -9.3135 -5.7469 42 1 9.2187 -13.3624 -6.8580 43 1 8.9655 -13.1886 -9.5302 44 1 7.7561 -10.9216 -10.0514 45 1 7.0550 -3.7518 -0.4195 46 1 5.9413 -1.5648 -0.2379 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001154211500.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:07:15 Heat of formation + Delta-G solvation = -47.526707 kcal Electronic energy + Delta-G solvation = -26981.205706 eV Core-core repulsion = 22837.202308 eV Total energy + Delta-G solvation = -4144.003398 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.64934 -40.89271 -40.61329 -38.85624 -37.52731 -36.01912 -34.46727 -34.07016 -33.04706 -31.80583 -31.23992 -30.22146 -27.67135 -26.48777 -24.79612 -23.67773 -23.52824 -22.73484 -22.57269 -21.83815 -21.27304 -19.79662 -19.53519 -19.07695 -17.51369 -17.41282 -17.16845 -16.98639 -16.68087 -16.49065 -15.84325 -15.79859 -15.75125 -15.55532 -15.33058 -15.00507 -14.80274 -14.39033 -14.28166 -14.13311 -14.08210 -13.95581 -13.66379 -13.56321 -13.16030 -13.05483 -12.84524 -12.48742 -12.40357 -12.33135 -12.12582 -11.86192 -11.83081 -11.50354 -11.26112 -11.06715 -10.89589 -10.34451 -9.78285 -9.65819 -9.32575 -8.96187 -8.49494 -6.22226 -0.00068 0.59366 0.63852 1.31683 1.35811 1.41205 1.52219 1.64001 2.05496 2.17386 2.28439 2.74598 3.02692 3.16123 3.44600 3.69925 3.94345 3.97669 4.05560 4.06817 4.10646 4.17821 4.20153 4.23954 4.49389 4.56836 4.60486 4.61470 4.68360 4.73713 4.78139 4.89036 4.89642 4.95137 5.00480 5.11879 5.19143 5.27734 5.29802 5.38568 5.40244 5.58331 5.77387 5.81436 5.84054 5.92406 6.11762 6.27818 6.36081 6.52827 6.84859 6.93351 7.59416 8.62196 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.019624 B = 0.001337 C = 0.001289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.466621 B =20944.664583 C =21722.199804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.010 3.990 3 Si 0.972 3.028 4 H -0.265 1.265 5 H -0.267 1.267 6 H -0.263 1.263 7 C -0.400 4.400 8 H 0.079 0.921 9 O -0.246 6.246 10 C 0.119 3.881 11 C -0.240 4.240 12 C -0.055 4.055 13 C -0.150 4.150 14 C 0.120 3.880 15 N -0.696 5.696 16 C 0.064 3.936 17 C -0.118 4.118 18 C 0.123 3.877 19 N -0.708 5.708 20 C 0.599 3.401 21 O -0.563 6.563 22 C -0.112 4.112 23 C -0.127 4.127 24 C -0.236 4.236 25 C 0.011 3.989 26 O -0.171 6.171 27 C -0.060 4.060 28 C -0.192 4.192 29 H 0.284 0.716 30 H 0.104 0.896 31 H 0.129 0.871 32 H 0.079 0.921 33 H 0.052 0.948 34 H 0.346 0.654 35 H 0.074 0.926 36 H 0.042 0.958 37 H 0.079 0.921 38 H 0.077 0.923 39 H 0.067 0.933 40 H 0.070 0.930 41 H 0.417 0.583 42 H 0.158 0.842 43 H 0.182 0.818 44 H 0.254 0.746 45 H 0.154 0.846 46 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.353 -22.760 -16.623 34.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.188 4.188 3 Si 0.794 3.206 4 H -0.190 1.190 5 H -0.192 1.192 6 H -0.187 1.187 7 C -0.476 4.476 8 H 0.097 0.903 9 O -0.154 6.154 10 C 0.070 3.930 11 C -0.259 4.259 12 C -0.073 4.073 13 C -0.151 4.151 14 C -0.008 4.008 15 N -0.328 5.328 16 C -0.066 4.066 17 C -0.156 4.156 18 C -0.001 4.001 19 N -0.359 5.359 20 C 0.387 3.613 21 O -0.444 6.444 22 C -0.163 4.163 23 C -0.148 4.148 24 C -0.255 4.255 25 C -0.059 4.059 26 O -0.066 6.066 27 C -0.079 4.079 28 C -0.211 4.211 29 H 0.094 0.906 30 H 0.122 0.878 31 H 0.147 0.853 32 H 0.097 0.903 33 H 0.070 0.930 34 H 0.164 0.836 35 H 0.093 0.907 36 H 0.060 0.940 37 H 0.098 0.902 38 H 0.096 0.904 39 H 0.085 0.915 40 H 0.088 0.912 41 H 0.253 0.747 42 H 0.176 0.824 43 H 0.199 0.801 44 H 0.269 0.731 45 H 0.172 0.828 46 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 19.774 -22.920 -15.932 34.208 hybrid contribution 0.155 0.955 0.018 0.968 sum 19.929 -21.965 -15.914 33.658 Atomic orbital electron populations 1.69734 1.06932 1.29582 1.50200 1.25287 0.95880 1.02166 0.95510 0.85204 0.78776 0.77349 0.79284 1.19039 1.19206 1.18704 1.20705 0.78168 0.96086 1.52672 0.90308 1.83510 1.21171 1.27552 1.83131 1.19710 0.93331 0.84998 0.94976 1.21282 1.00082 0.93359 1.11162 1.20883 0.94843 0.95809 0.95806 1.19689 0.92953 0.95496 1.07007 1.20622 0.98638 0.92282 0.89249 1.60433 1.57399 1.04926 1.10056 1.21827 0.97397 0.91524 0.95807 1.21625 1.01751 0.95149 0.97057 1.21372 1.01391 0.97155 0.80153 1.45853 1.59358 1.20615 1.10043 1.16747 0.77944 0.81773 0.84876 1.90864 1.50401 1.51383 1.51758 1.21864 1.10892 0.95679 0.87907 1.22273 0.99262 0.97464 0.95786 1.22233 1.06952 1.00937 0.95344 1.25382 0.98220 0.92820 0.89446 1.84060 1.63206 1.44426 1.14956 1.20966 1.00292 0.90038 0.96582 1.20513 0.90425 0.99873 1.10331 0.90591 0.87759 0.85284 0.90308 0.92959 0.83597 0.90712 0.93954 0.90216 0.90431 0.91464 0.91197 0.74663 0.82437 0.80084 0.73052 0.82817 0.85378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.49 13.96 21.61 0.30 -55.19 16 2 C 0.01 0.57 5.49 84.83 0.47 1.04 16 3 Si 0.97 45.51 28.62 68.60 1.96 47.48 16 4 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 5 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 6 H -0.26 -12.26 7.11 99.48 0.71 -11.55 16 7 C -0.40 -23.80 9.95 67.92 0.68 -23.12 16 8 H 0.08 4.94 5.44 -2.91 -0.02 4.92 16 9 O -0.25 -13.44 8.59 -22.76 -0.20 -13.64 16 10 C 0.12 5.55 6.65 22.58 0.15 5.70 16 11 C -0.24 -10.60 9.17 22.39 0.21 -10.40 16 12 C -0.05 -1.89 9.69 22.25 0.22 -1.68 16 13 C -0.15 -4.25 5.40 -19.83 -0.11 -4.36 16 14 C 0.12 2.42 5.81 85.56 0.50 2.92 16 15 N -0.70 -12.62 6.49 -517.94 -3.36 -15.98 16 16 C 0.06 0.85 5.69 86.31 0.49 1.34 16 17 C -0.12 -1.32 5.59 30.59 0.17 -1.15 16 18 C 0.12 1.64 5.67 86.38 0.49 2.13 16 19 N -0.71 -10.17 5.55 -467.13 -2.59 -12.76 16 20 C 0.60 11.90 7.79 86.44 0.67 12.57 16 21 O -0.56 -15.04 16.86 -4.34 -0.07 -15.12 16 22 C -0.11 -1.88 7.13 24.07 0.17 -1.71 16 23 C -0.13 -1.88 10.62 22.39 0.24 -1.64 16 24 C -0.24 -2.03 10.87 22.07 0.24 -1.79 16 25 C 0.01 0.07 12.08 67.10 0.81 0.88 16 26 O -0.17 -2.16 10.40 -5.07 -0.05 -2.21 16 27 C -0.06 -1.72 9.69 22.25 0.22 -1.51 16 28 C -0.19 -7.13 9.99 22.39 0.22 -6.91 16 29 H 0.28 15.65 8.31 -92.71 -0.77 14.88 16 30 H 0.10 5.14 5.64 -2.91 -0.02 5.12 16 31 H 0.13 3.92 8.06 -2.91 -0.02 3.89 16 32 H 0.08 1.55 8.08 -2.38 -0.02 1.53 16 33 H 0.05 0.88 8.08 -2.39 -0.02 0.86 16 34 H 0.35 5.93 8.72 -89.69 -0.78 5.14 16 35 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.04 0.50 8.14 -2.38 -0.02 0.48 16 37 H 0.08 0.78 8.14 -2.38 -0.02 0.76 16 38 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 41 H 0.42 4.31 8.23 -92.70 -0.76 3.55 16 42 H 0.16 2.26 8.06 -2.91 -0.02 2.24 16 43 H 0.18 0.56 8.06 -2.91 -0.02 0.53 16 44 H 0.25 -0.78 8.06 -2.91 -0.02 -0.80 16 45 H 0.15 3.11 8.06 -2.91 -0.02 3.08 16 46 H 0.13 4.38 8.06 -2.91 -0.02 4.35 16 Total: -1.00 -75.69 398.77 1.29 -74.40 By element: Atomic # 1 Polarization: 21.21 SS G_CDS: -0.52 Total: 20.69 kcal Atomic # 6 Polarization: -33.50 SS G_CDS: 5.83 Total: -27.67 kcal Atomic # 7 Polarization: -78.28 SS G_CDS: -5.65 Total: -83.93 kcal Atomic # 8 Polarization: -30.64 SS G_CDS: -0.32 Total: -30.96 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 1.96 Total: 47.48 kcal Total: -75.69 1.29 -74.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154211500.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.873 kcal (2) G-P(sol) polarization free energy of solvation -75.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds