Wall clock time and date at job start Wed Apr 1 2020 03:02:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.31840 * 119.65605 * 2 1 4 4 C 1.31853 * 121.77749 * 179.97438 * 3 2 1 5 5 C 1.38251 * 120.88530 * 0.02562 * 4 3 2 6 6 C 1.50698 * 120.38934 * 179.97438 * 5 4 3 7 7 O 1.42898 * 109.47087 * 0.02562 * 6 5 4 8 8 C 1.38537 * 119.22091 * 359.97438 * 5 4 3 9 9 C 1.50703 * 120.81078 * 180.02562 * 8 5 4 10 10 N 1.46495 * 109.47290 * 89.99886 * 9 8 5 11 11 C 1.39941 * 120.00086 * 179.97438 * 10 9 8 12 12 C 1.38863 * 120.02070 * 180.02562 * 11 10 9 13 13 C 1.38109 * 119.98193 * 180.27779 * 12 11 10 14 14 C 1.38709 * 120.01709 * 359.48715 * 13 12 11 15 15 O 1.36000 * 119.98041 * 180.23092 * 14 13 12 16 16 C 1.42896 * 116.99985 * 0.28391 * 15 14 13 17 17 C 1.50700 * 109.47265 * 179.97438 * 16 15 14 18 18 H 1.08003 * 119.99961 * 359.97438 * 17 16 15 19 19 C 1.37878 * 120.00256 * 180.02562 * 17 16 15 20 20 N 1.31515 * 119.99709 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99999 * 179.97438 * 19 17 16 22 22 H 1.48495 * 109.47246 * 59.99823 * 21 19 17 23 23 H 1.48504 * 109.47026 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.46894 * 299.99184 * 21 19 17 25 25 C 1.38695 * 120.03561 * 0.51396 * 14 13 12 26 26 C 1.38109 * 120.02537 * 359.74494 * 25 14 13 27 27 C 1.38702 * 119.65616 * 180.25781 * 2 1 3 28 28 O 1.35910 * 120.47416 * 0.05067 * 27 2 1 29 29 H 1.09000 * 109.46860 * 89.99255 * 1 2 3 30 30 H 1.08989 * 109.47175 * 209.99855 * 1 2 3 31 31 H 1.09004 * 109.46835 * 330.00175 * 1 2 3 32 32 H 1.07995 * 119.55588 * 180.02562 * 4 3 2 33 33 H 1.08997 * 109.47279 * 120.01739 * 6 5 4 34 34 H 1.09001 * 109.47165 * 240.01790 * 6 5 4 35 35 H 0.96700 * 113.99852 * 180.02562 * 7 6 5 36 36 H 1.08999 * 109.47351 * 329.99613 * 9 8 5 37 37 H 1.09002 * 109.47221 * 210.00120 * 9 8 5 38 38 H 0.97001 * 120.00250 * 0.02562 * 10 9 8 39 39 H 1.08002 * 120.00607 * 359.97438 * 12 11 10 40 40 H 1.07998 * 119.99409 * 179.72362 * 13 12 11 41 41 H 1.09009 * 109.47162 * 299.99465 * 16 15 14 42 42 H 1.08999 * 109.47594 * 59.99376 * 16 15 14 43 43 H 0.97001 * 120.00009 * 180.02562 * 20 19 17 44 44 H 1.08003 * 119.99005 * 179.72173 * 25 14 13 45 45 H 1.08000 * 120.01382 * 179.97438 * 26 25 14 46 46 H 0.96701 * 114.00026 * 270.24780 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1594 1.1457 0.0000 4 6 3.4770 1.1945 0.0005 5 6 4.2301 0.0351 0.0005 6 6 5.7355 0.1040 0.0005 7 8 6.1498 1.4716 0.0011 8 6 3.5846 -1.1907 0.0005 9 6 4.3702 -2.4767 0.0011 10 7 4.6242 -2.8932 1.3825 11 6 5.3408 -4.0676 1.6387 12 6 5.5814 -4.4630 2.9480 13 6 6.2937 -5.6191 3.1999 14 6 6.7595 -6.3908 2.1457 15 8 7.4568 -7.5316 2.3947 16 6 7.6669 -7.8774 3.7652 17 6 8.4514 -9.1617 3.8446 18 1 8.7583 -9.6639 2.9391 19 6 8.7763 -9.6962 5.0733 20 7 8.4020 -9.0849 6.1760 21 14 9.7480 -11.2885 5.1718 22 1 11.0601 -11.1100 4.4999 23 1 9.9665 -11.6478 6.5960 24 1 8.9901 -12.3733 4.4978 25 6 6.5197 -5.9966 0.8377 26 6 5.8122 -4.8379 0.5839 27 6 2.1933 -1.2053 -0.0054 28 8 1.5165 -2.3839 -0.0118 29 1 -0.3633 0.0001 -1.0277 30 1 -0.3633 -0.8899 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 3.9746 2.1530 0.0009 33 1 6.1220 -0.3930 0.8903 34 1 6.1220 -0.3925 -0.8896 35 1 7.1093 1.5918 0.0007 36 1 5.3192 -2.3231 -0.5124 37 1 3.8003 -3.2509 -0.5128 38 1 4.2951 -2.3553 2.1196 39 1 5.2158 -3.8640 3.7689 40 1 6.4847 -5.9244 4.2181 41 1 8.2226 -7.0807 4.2598 42 1 6.7040 -8.0091 4.2585 43 1 8.6309 -9.4607 7.0405 44 1 6.8866 -6.5956 0.0174 45 1 5.6259 -4.5309 -0.4347 46 1 1.3166 -2.7274 0.8698 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167821328.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:02:25 Heat of formation + Delta-G solvation = -97.389424 kcal Electronic energy + Delta-G solvation = -28583.112392 eV Core-core repulsion = 24436.946785 eV Total energy + Delta-G solvation = -4146.165607 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.95348 -40.82535 -38.87856 -38.56971 -37.66839 -36.41176 -35.03184 -34.09806 -32.39215 -31.94062 -30.24328 -29.75351 -28.87557 -26.83705 -26.15540 -25.19583 -23.81283 -23.28909 -22.25553 -21.53929 -19.20270 -19.15431 -19.07873 -18.56838 -17.98833 -17.34286 -17.24302 -16.77348 -16.62093 -16.34695 -16.18713 -15.88788 -15.43306 -15.30337 -15.18666 -14.97508 -14.69116 -14.47474 -14.17897 -13.95522 -13.70552 -13.54599 -13.35766 -13.26740 -13.12842 -13.07511 -12.90460 -12.89391 -12.74944 -12.28812 -12.26085 -12.04128 -11.76928 -11.41596 -11.28004 -10.76415 -10.52268 -10.42558 -10.28604 -9.89436 -9.64288 -8.37758 -7.97938 -6.51767 -0.10126 -0.08380 0.45279 0.76669 1.39518 1.44450 1.52855 2.29653 2.33998 2.69377 2.86768 2.91887 2.95316 2.98461 3.25115 3.32089 3.45212 3.65361 3.93228 3.99018 4.06164 4.24399 4.28513 4.37421 4.40798 4.44781 4.49587 4.52103 4.68096 4.70504 4.73325 4.74729 4.81214 4.98409 5.02062 5.07596 5.11534 5.17393 5.18210 5.37788 5.48922 5.52981 5.64373 5.78399 5.89655 6.35713 6.55523 6.58937 6.77878 6.79819 6.93463 6.94154 7.21341 8.74314 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.020881 B = 0.001846 C = 0.001776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.582544 B =15163.568140 C =15764.256306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.085 3.915 3 N -0.486 5.486 4 C 0.101 3.899 5 C -0.116 4.116 6 C 0.123 3.877 7 O -0.584 6.584 8 C -0.084 4.084 9 C 0.175 3.825 10 N -0.736 5.736 11 C 0.181 3.819 12 C -0.150 4.150 13 C -0.178 4.178 14 C 0.051 3.949 15 O -0.345 6.345 16 C 0.216 3.784 17 C -0.557 4.557 18 H 0.066 0.934 19 C 0.009 3.991 20 N -0.926 5.926 21 Si 0.988 3.012 22 H -0.264 1.264 23 H -0.273 1.273 24 H -0.264 1.264 25 C -0.120 4.120 26 C -0.148 4.148 27 C 0.079 3.921 28 O -0.487 6.487 29 H 0.082 0.918 30 H 0.091 0.909 31 H 0.077 0.923 32 H 0.170 0.830 33 H 0.071 0.929 34 H 0.079 0.921 35 H 0.406 0.594 36 H 0.081 0.919 37 H 0.078 0.922 38 H 0.402 0.598 39 H 0.138 0.862 40 H 0.106 0.894 41 H -0.003 1.003 42 H -0.004 1.004 43 H 0.273 0.727 44 H 0.133 0.867 45 H 0.153 0.847 46 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.147 21.783 -13.399 28.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.053 4.053 3 N -0.197 5.197 4 C -0.056 4.056 5 C -0.119 4.119 6 C 0.045 3.955 7 O -0.394 6.394 8 C -0.092 4.092 9 C 0.051 3.949 10 N -0.370 5.370 11 C 0.080 3.920 12 C -0.172 4.172 13 C -0.198 4.198 14 C 0.005 3.995 15 O -0.259 6.259 16 C 0.142 3.858 17 C -0.594 4.594 18 H 0.084 0.916 19 C -0.190 4.190 20 N -0.565 5.565 21 Si 0.810 3.190 22 H -0.189 1.189 23 H -0.198 1.198 24 H -0.189 1.189 25 C -0.140 4.140 26 C -0.170 4.170 27 C 0.031 3.969 28 O -0.299 6.299 29 H 0.101 0.899 30 H 0.110 0.890 31 H 0.096 0.904 32 H 0.187 0.813 33 H 0.089 0.911 34 H 0.097 0.903 35 H 0.258 0.742 36 H 0.099 0.901 37 H 0.096 0.904 38 H 0.237 0.763 39 H 0.156 0.844 40 H 0.124 0.876 41 H 0.015 0.985 42 H 0.014 0.986 43 H 0.082 0.918 44 H 0.151 0.849 45 H 0.170 0.830 46 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges -13.163 22.552 -14.137 29.693 hybrid contribution 1.361 -1.404 1.538 2.488 sum -11.801 21.148 -12.599 27.299 Atomic orbital electron populations 1.20672 0.86790 1.04176 1.03791 1.22139 0.98861 0.87604 0.96690 1.67624 1.10588 1.29060 1.12447 1.22768 0.88391 0.99440 0.94991 1.20750 0.97416 0.92828 1.00914 1.20816 0.88902 0.83904 1.01851 1.86325 1.30502 1.24738 1.97827 1.20397 0.93318 0.95038 1.00482 1.20020 0.98650 0.91713 0.84522 1.44268 1.62034 1.24247 1.06422 1.17502 0.94027 0.88036 0.92414 1.20447 1.03325 0.97463 0.95988 1.21140 1.02921 0.97613 0.98122 1.19495 0.96594 0.88199 0.95258 1.86015 1.70097 1.38942 1.30886 1.20050 0.94667 0.95077 0.76006 1.21320 1.36464 1.07900 0.93764 0.91601 1.25983 0.96712 1.02046 0.94239 1.70054 1.46574 1.41425 0.98428 0.85164 0.78733 0.77463 0.77650 1.18883 1.19822 1.18902 1.20397 1.01900 0.98391 0.93279 1.20585 1.02352 0.94995 0.99064 1.19048 0.89587 0.86786 1.01473 1.84787 1.75511 1.34387 1.35172 0.89909 0.89021 0.90380 0.81277 0.91064 0.90343 0.74241 0.90096 0.90376 0.76251 0.84434 0.87635 0.98525 0.98575 0.91782 0.84901 0.82983 0.73166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.19 9.95 71.24 0.71 -0.48 16 2 C 0.09 1.48 6.80 42.67 0.29 1.77 16 3 N -0.49 -9.84 10.27 -183.50 -1.88 -11.73 16 4 C 0.10 1.84 10.54 84.69 0.89 2.74 16 5 C -0.12 -1.80 5.89 -19.79 -0.12 -1.91 16 6 C 0.12 1.41 6.24 71.24 0.44 1.86 16 7 O -0.58 -6.53 12.17 -148.98 -1.81 -8.34 16 8 C -0.08 -1.25 5.30 -19.58 -0.10 -1.35 16 9 C 0.17 2.42 4.50 85.64 0.39 2.80 16 10 N -0.74 -11.90 5.73 -342.98 -1.97 -13.87 16 11 C 0.18 4.32 6.66 38.15 0.25 4.58 16 12 C -0.15 -4.35 9.89 22.39 0.22 -4.12 16 13 C -0.18 -6.95 9.03 22.35 0.20 -6.75 16 14 C 0.05 2.16 6.69 22.49 0.15 2.31 16 15 O -0.34 -17.85 10.12 -93.55 -0.95 -18.80 16 16 C 0.22 12.32 4.49 71.24 0.32 12.64 16 17 C -0.56 -33.25 9.43 25.60 0.24 -33.00 16 18 H 0.07 3.86 7.81 -2.91 -0.02 3.84 16 19 C 0.01 0.54 5.46 84.65 0.46 1.00 16 20 N -0.93 -55.08 13.29 21.45 0.28 -54.80 16 21 Si 0.99 43.84 29.54 68.60 2.03 45.87 16 22 H -0.26 -11.27 7.11 99.48 0.71 -10.57 16 23 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 24 H -0.26 -11.29 7.11 99.48 0.71 -10.59 16 25 C -0.12 -4.00 9.98 22.35 0.22 -3.78 16 26 C -0.15 -3.72 9.31 22.39 0.21 -3.51 16 27 C 0.08 1.23 6.68 22.60 0.15 1.38 16 28 O -0.49 -6.39 11.74 -92.53 -1.09 -7.48 16 29 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.09 0.80 7.53 -2.39 -0.02 0.79 16 31 H 0.08 0.93 8.14 -2.38 -0.02 0.91 16 32 H 0.17 2.91 7.01 -2.91 -0.02 2.89 16 33 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.08 0.71 7.58 -2.39 -0.02 0.69 16 35 H 0.41 1.06 9.12 -74.06 -0.68 0.38 16 36 H 0.08 0.98 6.60 -2.39 -0.02 0.96 16 37 H 0.08 1.16 7.42 -2.39 -0.02 1.15 16 38 H 0.40 5.77 8.48 -92.71 -0.79 4.98 16 39 H 0.14 3.28 8.06 -2.91 -0.02 3.26 16 40 H 0.11 4.59 6.29 -2.91 -0.02 4.57 16 41 H 0.00 -0.18 7.65 -2.38 -0.02 -0.20 16 42 H 0.00 -0.21 7.67 -2.39 -0.02 -0.23 16 43 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 44 H 0.13 4.08 8.06 -2.91 -0.02 4.06 16 45 H 0.15 2.80 6.73 -2.91 -0.02 2.78 16 46 H 0.41 2.54 9.06 -74.06 -0.67 1.87 16 Total: -1.00 -74.75 388.81 -1.53 -76.27 By element: Atomic # 1 Polarization: 17.78 SS G_CDS: -1.07 Total: 16.71 kcal Atomic # 6 Polarization: -28.76 SS G_CDS: 4.93 Total: -23.83 kcal Atomic # 7 Polarization: -76.83 SS G_CDS: -3.57 Total: -80.40 kcal Atomic # 8 Polarization: -30.77 SS G_CDS: -3.85 Total: -34.62 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Total: -74.75 -1.53 -76.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167821328.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.118 kcal (2) G-P(sol) polarization free energy of solvation -74.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds